Click here to close Hello! We notice that you are using Internet Explorer, which is not supported by Xenbase and may cause the site to display incorrectly. We suggest using a current version of Chrome, FireFox, or Safari.

Summary Expression Phenotypes Gene Literature (0) GO Terms (0) Nucleotides (120) Proteins (57) Interactants (0) Wiki
XB-GENEPAGE-5887134

Show:     All X. tropicalis X. laevis.L

Nucleotide sequences for topaz1 - All

RefSeq mRNAs(9)
Models - Gene (15)
Models - mRNA (35)
mRNAs (20)
ESTs (14)

RefSeq mRNAs (9)

Accession Version Protein Name Length Protein Species
NM_001199939 NM_001199939.1 protein TOPAZ1 isoform 1 2850 bp NP_001186868 X. tropicalis
XM_031903275 XM_031903275.1 XP_031759135.1 protein TOPAZ1 isoform X1 2804 bp XP_031759135 X. tropicalis
XM_031903276 XM_031903276.1 XP_031759136.1 protein TOPAZ1 isoform X1 2801 bp XP_031759136 X. tropicalis
NM_001374744 NM_001374744.1 NP_001361673.1 testis- and ovary-specific PAZ domain-containing protein 1 6628 bp NP_001361673 X. tropicalis
XM_018094575 XM_018094575.2 protein TOPAZ1 isoform X1 2813 bp XP_017950064 X. tropicalis
XM_041566028 XM_041566028.1 XP_041421962.1 protein TOPAZ1 isoform X2 6413 bp XP_041421962 X. laevis.L
XM_018267481 XM_018267481.2 protein TOPAZ1 isoform X1 6578 bp XP_018122970 X. laevis.L
XM_018267482 XM_018267482.2 protein TOPAZ1 isoform X3 4807 bp XP_018122971 X. laevis.L
XM_018269306 XM_018269306.2 protein TOPAZ1 6018 bp XP_018124795 X. laevis.S

Models - Gene (15)

Source Version Model Species
NCBI 10.0 XBXT10g014245 X. tropicalis
NCBI 10.1 XBXL10_1g29032 X. laevis.S
NCBI 10.1 XBXL10_1g27196 X. laevis.L
ENSEMBL 10.0 cyp3a5 X. tropicalis
JGI 9.1 Xelaev18033155m.g X. laevis.S
JGI 9.1 Xelaev18031100m.g X. laevis.L
Xenbase 9.1 gene21521 X. tropicalis
Xenbase 9.2 gene39459 X. laevis.S
Xenbase 9.2 gene12894 X. laevis.L
ENSEMBL 9.1 cyp3a5 X. tropicalis
JGI 7.1 Xetro.F01237 X. tropicalis
JGI 6.0 XeXenL6RMv10027964m.g X. laevis.S
JGI 4.1 e_gw1.320.47.1 X. tropicalis
JGI 4.1 gw1.320.47.1 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_320000012 X. tropicalis

mRNAs based on gene models(35)

Source Version Model Species
NCBI 10.0 mRNA070540 X. tropicalis
NCBI 10.1 XBmRNA50915 X. laevis.L
NCBI 10.1 XBmRNA54617 X. laevis.S
ENSEMBL 10.0 ENSXETT00000084924 X. tropicalis
ENSEMBL 10.0 ENSXETT00000066426 X. tropicalis
ENSEMBL 10.0 ENSXETT00000068320 X. tropicalis
ENSEMBL 10.0 ENSXETT00000099103 X. tropicalis
ENSEMBL 10.0 ENSXETT00000082044 X. tropicalis
ENSEMBL 10.0 ENSXETT00000025717 X. tropicalis
ENSEMBL 10.0 ENSXETT00000073666 X. tropicalis
ENSEMBL 10.0 ENSXETT00000074740 X. tropicalis
ENSEMBL 10.0 ENSXETT00000064999 X. tropicalis
ENSEMBL 10.0 ENSXETT00000115998 X. tropicalis
JGI 9.1 Xelaev18031100m X. laevis.L
JGI 9.1 Xelaev18033155m X. laevis.S
Xenbase 9.1 rna44017 X. tropicalis
Xenbase 9.2 rna37467 X. laevis.L
Xenbase 9.2 rna81052 X. laevis.S
ENSEMBL 9.1 ENSXETT00000068320 X. tropicalis
ENSEMBL 9.1 ENSXETT00000100591 X. tropicalis
ENSEMBL 9.1 ENSXETT00000084924 X. tropicalis
ENSEMBL 9.1 ENSXETT00000066426 X. tropicalis
ENSEMBL 9.1 ENSXETT00000099103 X. tropicalis
ENSEMBL 9.1 ENSXETT00000082044 X. tropicalis
ENSEMBL 9.1 ENSXETT00000073666 X. tropicalis
ENSEMBL 9.1 ENSXETT00000098363 X. tropicalis
ENSEMBL 9.1 ENSXETT00000064999 X. tropicalis
ENSEMBL 9.1 ENSXETT00000025717 X. tropicalis
JGI 7.1 Xetro.F01237.2 X. tropicalis
JGI 7.1 Xetro.F01237.3 X. tropicalis
JGI 7.1 Xetro.F01237.1 X. tropicalis
JGI 6.0 XeXenL6RMv10027964m X. laevis.S
JGI 4.1 e_gw1.320.47.1 X. tropicalis
JGI 4.1 gw1.320.47.1 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_320000012 X. tropicalis

mRNAs from cDNA libraries (20)

Clone Accession Species Library Anatomy Stage
TEgg090j20 CR855530 X. tropicalis
TGas011d11 CU025025 X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7544875 BC157337 X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
NM_001199939 X. tropicalis
XM_018094575 X. tropicalis
EL833479 X. tropicalis
EL833478 X. tropicalis
DT402254 X. tropicalis
DT402253 X. tropicalis
DN087003 X. tropicalis
BX770256 X. tropicalis
BX756929 X. tropicalis
AL895749 X. tropicalis
NM_001374744 X. tropicalis
XM_031903276 X. tropicalis
XM_031903275 X. tropicalis
XM_018269306 X. laevis.S
XM_018267482 X. laevis.L
XM_018267481 X. laevis.L
XM_041566028 X. laevis.L

ESTs (14)

Clone Accession 5'/3' Species Library Anatomy Stage
TGas105i10 AL956582 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7544875 CX486729 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:8919280 EL833478 5' X. tropicalis NICHD_XGC_tropTe1 testis frog
TGas058b20 AL680211 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas011d11 AL630670 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas120f11 AL960627 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas105i10 BX756929 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas120f11 BX757142 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7544875 CX486728 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:8919280 EL833479 3' X. tropicalis NICHD_XGC_tropTe1 testis frog
PBX0135A11 AW643978 5' X. laevis.S Blackshear/Soares normalized Xenopus egg library egg unfertilized egg stage
IMAGE:6634182 BU908670 5' X. laevis.S NICHD_XGC_Emb1 whole organism NF stage 10
IMAGp998H038089 BX850577 5' X. laevis.S Soares NXEG egg unfertilized egg stage
IMAGE:3302450 BF072343 3' X. laevis.S Blackshear/Soares normalized Xenopus egg library egg unfertilized egg stage