Click here to close Hello! We notice that you are using Internet Explorer, which is not supported by Xenbase and may cause the site to display incorrectly. We suggest using a current version of Chrome, FireFox, or Safari.

Summary Expression Phenotypes Gene Literature (0) GO Terms (6) Nucleotides (161) Proteins (91) Interactants (41) Wiki
XB-GENEPAGE-5875738

Show:     All X. tropicalis X. laevis.L

Nucleotide sequences for capn3 - Xenopus tropicalis

RefSeq mRNAs(7)
Models - Gene (23)
Models - mRNA (40)
mRNAs (7)
ESTs (9)

RefSeq mRNAs (7)

Accession Version Protein Name Length Protein Species
XM_002935335 XM_002935335.5 calpain-3 isoform X1 2987 bp XP_002935381 X. tropicalis
XM_031890823 XM_031890823.1 XP_031746683.1 calpain-3 isoform X3 2965 bp XP_031746683 X. tropicalis
XM_031890824 XM_031890824.1 XP_031746684.1 calpain-3 isoform X4 2861 bp XP_031746684 X. tropicalis
XM_031890825 XM_031890825.1 XP_031746685.1 calpain-3 isoform X6 2833 bp XP_031746685 X. tropicalis
XM_031890826 XM_031890826.1 XP_031746686.1 calpain-3 isoform X7 2707 bp XP_031746686 X. tropicalis
XM_004917239 XM_004917239.4 calpain-3 isoform X2 2966 bp XP_004917296 X. tropicalis
XM_012969294 XM_012969294.3 calpain-3 isoform X5 2855 bp XP_012824748 X. tropicalis

Models - Gene (23)

Source Version Model Species
NCBI 10.0 XBXT10g006510 X. tropicalis
ENSEMBL 10.0 capn3 X. tropicalis
Xenbase 9.1 gene31444 X. tropicalis
ENSEMBL 9.1 capn3 X. tropicalis
JGI 8.0 Xetrov14035333m.g X. tropicalis
JGI 7.1 Xetro.H01719 X. tropicalis
ENSEMBL 4.1 ENSXETG00000012304 X. tropicalis
JGI 4.1 e_gw1.145.81.1 X. tropicalis
JGI 4.1 gw1.145.11.1 X. tropicalis
JGI 4.1 gw1.145.51.1 X. tropicalis
JGI 4.1 gw1.145.81.1 X. tropicalis
JGI 4.1 e_gw1.145.11.1 X. tropicalis
JGI 4.1 e_gw1.145.51.1 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_1450027 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1450011 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1450050 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1450080 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_1450039 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_1450040 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_1450021 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_145000039 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_145000040 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_145000021 X. tropicalis

mRNAs based on gene models(40)

Source Version Model Species
NCBI 10.0 mRNA032148 X. tropicalis
ENSEMBL 10.0 ENSXETT00000087454 X. tropicalis
ENSEMBL 10.0 ENSXETT00000096253 X. tropicalis
ENSEMBL 10.0 ENSXETT00000026925 X. tropicalis
ENSEMBL 10.0 ENSXETT00000094368 X. tropicalis
ENSEMBL 10.0 ENSXETT00000082658 X. tropicalis
ENSEMBL 10.0 ENSXETT00000095469 X. tropicalis
ENSEMBL 10.0 ENSXETT00000071121 X. tropicalis
Xenbase 9.1 rna59778 X. tropicalis
ENSEMBL 9.1 ENSXETT00000087454 X. tropicalis
ENSEMBL 9.1 ENSXETT00000096253 X. tropicalis
ENSEMBL 9.1 ENSXETT00000094368 X. tropicalis
ENSEMBL 9.1 ENSXETT00000082658 X. tropicalis
ENSEMBL 9.1 ENSXETT00000095469 X. tropicalis
ENSEMBL 9.1 ENSXETT00000068003 X. tropicalis
ENSEMBL 9.1 ENSXETT00000101309 X. tropicalis
ENSEMBL 9.1 ENSXETT00000077768 X. tropicalis
ENSEMBL 9.1 ENSXETT00000071121 X. tropicalis
ENSEMBL 9.1 ENSXETT00000026925 X. tropicalis
JGI 8.0 Xetrov14035333m X. tropicalis
JGI 7.1 Xetro.H01719.2 X. tropicalis
JGI 7.1 Xetro.H01719.3 X. tropicalis
JGI 7.1 Xetro.H01719.1 X. tropicalis
JGI 4.1 e_gw1.145.81.1 X. tropicalis
ENSEMBL 4.1 ENSXETT00000026925 X. tropicalis
JGI 4.1 e_gw1.145.11.1 X. tropicalis
JGI 4.1 e_gw1.145.51.1 X. tropicalis
JGI 4.1 gw1.145.11.1 X. tropicalis
JGI 4.1 gw1.145.51.1 X. tropicalis
JGI 4.1 gw1.145.81.1 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_1450027 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1450011 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1450050 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1450080 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_1450039 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_1450040 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_1450021 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_145000039 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_145000040 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_145000021 X. tropicalis

mRNAs from cDNA libraries (7)

Clone Accession Species Library Anatomy Stage
XM_002935335 X. tropicalis
XM_012969294 X. tropicalis
XM_004917239 X. tropicalis
XM_031890826 X. tropicalis
XM_031890825 X. tropicalis
XM_031890824 X. tropicalis
XM_031890823 X. tropicalis

ESTs (9)

Clone Accession 5'/3' Species Library Anatomy Stage
IMAGE:8903605 EL794326 5' X. tropicalis NICHD_XGC_tropTail_m tail NF stage 55 to NF stage 66
IMAGE:7854240 DT396260 5' X. tropicalis NIH_XGC_tropSkeMus1 skeletal muscle frog
IMAGE:7850537 DT388805 5' X. tropicalis NIH_XGC_tropSkeMus1 skeletal muscle frog
TTbA043i20 CR434919 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
IMAGE:8903605 EL794327 3' X. tropicalis NICHD_XGC_tropTail_m tail NF stage 55 to NF stage 66
IMAGE:7847584 DT531966 3' X. tropicalis NIH_XGC_tropSkeMus1 skeletal muscle frog
IMAGE:7854240 DT396259 3' X. tropicalis NIH_XGC_tropSkeMus1 skeletal muscle frog
IMAGE:7850537 DT388804 3' X. tropicalis NIH_XGC_tropSkeMus1 skeletal muscle frog
TTbA043i20 CR434920 3' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30