Click here to close Hello! We notice that you are using Internet Explorer, which is not supported by Xenbase and may cause the site to display incorrectly. We suggest using a current version of Chrome, FireFox, or Safari.

Summary Expression Phenotypes Gene Literature (4) GO Terms (51) Nucleotides (123) Proteins (44) Interactants (32) Wiki
XB-GENEPAGE-5871696

Show:     All X. tropicalis X. laevis

Nucleotide sequences for c1h9orf72 - All

RefSeq mRNAs(4)
Models - Gene (29)
Models - mRNA (32)
mRNAs (8)
ESTs (32)

RefSeq mRNAs (4)

Accession Version Protein Name Length Protein Species
NM_001016262 NM_001016262.3 guanine nucleotide exchange factor C9orf72 homolog 2533 bp NP_001016262 X. tropicalis
XM_012962136 XM_012962136.2 guanine nucleotide exchange C9orf72 homolog isoform X1 3571 bp XP_012817590 X. tropicalis
NM_001095450 NM_001095450.1 uncharacterized protein LOC496290 2035 bp NP_001088919 X. laevis.L
XM_041582430 XM_041582430.1 XP_041438364.1 uncharacterized protein LOC496290 isoform X1 2827 bp XP_041438364 X. laevis.L

Models - Gene (29)

Source Version Model Species
NCBI 10.1 XBXL10_1g2009 X. laevis.L
NCBI 10.0 XBXT10g005090 X. tropicalis
NCBI 10.1 XBXL10_1g4779 X. laevis.S
ENSEMBL 10.0 c9orf72 X. tropicalis
Xenbase 9.2 gene4504 X. laevis.L
JGI 9.1 Xelaev18006771m.g X. laevis.L
Xenbase 9.1 gene5452 X. tropicalis
ENSEMBL 9.1 c9orf72 X. tropicalis
JGI 7.2 Xelaev16068695m.g X. laevis.L
JGI 7.1 Xetro.A01803 X. tropicalis
JGI 6.0 XeXenL6RMv10026509m.g X. laevis.L
ENSEMBL 4.1 ENSXETG00000009376 X. tropicalis
JGI 4.1 e_gw1.78.46.1 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_78000001 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_78000004 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_78000016 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_78000017 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_780005 X. tropicalis
JGI 4.1 e_gw1.78.178.1 X. tropicalis
JGI 4.1 e_gw1.78.8.1 X. tropicalis
JGI 4.1 gw1.78.178.1 X. tropicalis
JGI 4.1 gw1.78.46.1 X. tropicalis
JGI 4.1 gw1.78.8.1 X. tropicalis
JGI 4.1 estExt_Genewise1.C_780008 X. tropicalis
JGI 4.1 estExt_Genewise1.C_780045 X. tropicalis
JGI 4.1 estExt_Genewise1.C_780175 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_780003 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_780015 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_780016 X. tropicalis

mRNAs based on gene models(32)

Source Version Model Species
NCBI 10.1 XBmRNA3603 X. laevis.L
NCBI 10.0 mRNA025251 X. tropicalis
ENSEMBL 10.0 ENSXETT00000071039 X. tropicalis
ENSEMBL 10.0 ENSXETT00000064831 X. tropicalis
ENSEMBL 10.0 ENSXETT00000086434 X. tropicalis
Xenbase 9.2 rna13152 X. laevis.L
Xenbase 9.1 rna17673 X. tropicalis
ENSEMBL 9.1 ENSXETT00000071039 X. tropicalis
ENSEMBL 9.1 ENSXETT00000086434 X. tropicalis
ENSEMBL 9.1 ENSXETT00000064831 X. tropicalis
JGI 9.1 Xelaev18006771m X. laevis.L
JGI 7.2 Xelaev16068695m X. laevis.L
JGI 7.1 Xetro.A01803.1 X. tropicalis
JGI 6.0 XeXenL6RMv10026509m X. laevis.L
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_78000001 X. tropicalis
JGI 4.1 gw1.78.178.1 X. tropicalis
JGI 4.1 gw1.78.46.1 X. tropicalis
JGI 4.1 gw1.78.8.1 X. tropicalis
JGI 4.1 estExt_Genewise1.C_780175 X. tropicalis
JGI 4.1 e_gw1.78.46.1 X. tropicalis
JGI 4.1 e_gw1.78.8.1 X. tropicalis
ENSEMBL 4.1 ENSXETT00000020664 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_780003 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_780015 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_780016 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_780005 X. tropicalis
JGI 4.1 estExt_Genewise1.C_780008 X. tropicalis
JGI 4.1 estExt_Genewise1.C_780045 X. tropicalis
JGI 4.1 e_gw1.78.178.1 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_78000004 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_78000016 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_78000017 X. tropicalis

mRNAs from cDNA libraries (8)

Clone Accession Species Library Anatomy Stage
IMAGE:7598693 BC135150 X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
TGas119m06 CR761696 X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
NM_001016262 X. tropicalis
XM_012962136 X. tropicalis
IMAGE:7205295 BC088722 X. laevis.L
IMAGE:8461500 BC129537 X. laevis.L
NM_001095450 X. laevis.L
XM_041582430 X. laevis.L

ESTs (32)

Clone Accession 5'/3' Species Library Anatomy Stage
IMAGE:8910101 EL805713 5' X. tropicalis NICHD_XGC_tropTail_m tail NF stage 55 to NF stage 66
TNeu003h20 AL637086 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu036l15 AL661562 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TGas119m06 AL960585 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7560835 CX463410 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7785197 CX315956 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7598693 CX388126 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7652933 CX820600 5' X. tropicalis NIH_XGC_tropBrn3 brain frog
IMAGE:7667288 CX854304 5' X. tropicalis NIH_XGC_tropBrn4 brain frog
IMAGE:7670842 CX878602 5' X. tropicalis NIH_XGC_tropBrn4 brain frog
IMAGE:7736979 DN023810 5' X. tropicalis NIH_XGC_tropLiv1 liver frog
CABC4520 DR833420 5' X. tropicalis NIH_XGC_tropFat1 fat body frog
IMAGE:8930876 EL665553 5' X. tropicalis NICHD_XGC_tropThy1 thymus frog
IMAGE:8856204 EL818968 5' X. tropicalis NICHD_XGC_tropTe1 testis frog
xthr10A20 CN095639 5' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
IMAGE:8887424 EL845452 5' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
IMAGE:7598693 CX388125 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:8910101 EL805714 3' X. tropicalis NICHD_XGC_tropTail_m tail NF stage 55 to NF stage 66
IMAGE:7560835 CX463409 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7670842 CX878601 3' X. tropicalis NIH_XGC_tropBrn4 brain frog
IMAGE:7785197 CX315955 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:8930876 EL665552 3' X. tropicalis NICHD_XGC_tropThy1 thymus frog
IMAGE:8856204 EL818969 3' X. tropicalis NICHD_XGC_tropTe1 testis frog
CABC4520 DR833419 3' X. tropicalis NIH_XGC_tropFat1 fat body frog
IMAGE:7667288 CX854303 3' X. tropicalis NIH_XGC_tropBrn4 brain frog
IMAGE:8887424 EL845453 3' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
TGas119m06 BX757040 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
PBX0153E10 AW645582 5' X. laevis.L Blackshear/Soares normalized Xenopus egg library egg unfertilized egg stage
IMAGp998N2010560 BX847356 5' X. laevis.L NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
XL430m12ex BP679077 5' X. laevis.L Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
IMAGE:4681171 BM172609 3' X. laevis.L NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
XL430m12ex BP715987 3' X. laevis.L Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5