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Summary Expression Phenotypes Gene Literature (0) GO Terms (2) Nucleotides (240) Proteins (52) Interactants (9) Wiki
XB-GENEPAGE-5742237

Show:     All X. tropicalis X. laevis

Nucleotide sequences for thumpd1 - All

RefSeq mRNAs(7)
Models - Gene (30)
Models - mRNA (34)
mRNAs (9)
ESTs (126)

RefSeq mRNAs (7)

Accession Version Protein Name Length Protein Species
NM_203728 NM_203728.1 THUMP domain-containing protein 1 1838 bp NP_989059 X. tropicalis
NM_001094700 NM_001094700.1 THUMP domain containing 1 S homeolog 2059 bp NP_001088169 X. laevis.S
XM_018237564 XM_018237564.2 THUMP domain containing 1 S homeolog isoform X1 1419 bp XP_018093053 X. laevis.S
XM_018236319 XM_018236319.2 THUMP domain-containing protein 1 isoform X1 1452 bp XP_018091808 X. laevis.L
XM_018236320 XM_018236320.2 THUMP domain-containing protein 1 isoform X1 1782 bp XP_018091809 X. laevis.L
XM_041576453 XM_041576453.1 XP_041432387.1 THUMP domain-containing protein 1 isoform X1 1610 bp XP_041432387 X. laevis.L
XM_041576454 XM_041576454.1 XP_041432388.1 THUMP domain-containing protein 1 isoform X2 1049 bp XP_041432388 X. laevis.L

Models - Gene (30)

Source Version Model Species
NCBI 10.1 XBXL10_1g43806 X. laevis.S
NCBI 10.1 XBXL10_1g41089 X. laevis.L
NCBI 10.0 XBXT10g006372 X. tropicalis
ENSEMBL 10.0 thumpd1 X. tropicalis
Xenbase 9.2 gene10377 X. laevis.L
Xenbase 9.2 gene12183 X. laevis.S
JGI 9.1 Xelaev18045173m.g X. laevis.L
JGI 9.1 Xelaev18047503m.g X. laevis.S
Xenbase 9.1 gene22778 X. tropicalis
ENSEMBL 9.1 thumpd1 X. tropicalis
JGI 8.0 Xetrov14038100m.g X. tropicalis
JGI 7.2 Xelaev16031192m.g X. laevis.S
JGI 7.1 Xetro.I01147 X. tropicalis
JGI 6.0 XeXenL6RMv10055026m.g X. laevis.S
JGI 6.0 XeXenL6RMv10004559m.g X. laevis.S
ENSEMBL 4.1 ENSXETG00000005539 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_310000016 X. tropicalis
JGI 4.1 e_gw1.310.10.1 X. tropicalis
JGI 4.1 e_gw1.310.82.1 X. tropicalis
JGI 4.1 e_gw1.310.83.1 X. tropicalis
JGI 4.1 gw1.310.10.1 X. tropicalis
JGI 4.1 gw1.310.82.1 X. tropicalis
JGI 4.1 gw1.310.83.1 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_3100008 X. tropicalis
JGI 4.1 estExt_Genewise1.C_3100008 X. tropicalis
JGI 4.1 estExt_Genewise1.C_3100080 X. tropicalis
JGI 4.1 estExt_Genewise1.C_3100081 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_3100005 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_3100016 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_310000005 X. tropicalis

mRNAs based on gene models(34)

Source Version Model Species
NCBI 10.1 XBmRNA77529 X. laevis.L
NCBI 10.1 XBmRNA82455 X. laevis.S
NCBI 10.0 mRNA031487 X. tropicalis
ENSEMBL 10.0 ENSXETT00000068595 X. tropicalis
Xenbase 9.2 rna35393 X. laevis.S
Xenbase 9.2 rna30163 X. laevis.L
JGI 9.1 Xelaev18047503m X. laevis.S
Xenbase 9.1 rna45942 X. tropicalis
JGI 9.1 Xelaev18045173m X. laevis.L
ENSEMBL 9.1 ENSXETT00000089138 X. tropicalis
ENSEMBL 9.1 ENSXETT00000068595 X. tropicalis
JGI 8.0 Xetrov14038100m X. tropicalis
JGI 7.2 Xelaev16031192m X. laevis.S
JGI 7.1 Xetro.I01147.1 X. tropicalis
JGI 7.1 Xetro.I01147.4 X. tropicalis
JGI 7.1 Xetro.I01147.3 X. tropicalis
JGI 7.1 Xetro.I01147.2 X. tropicalis
JGI 6.0 XeXenL6RMv10004559m X. laevis.S
JGI 6.0 XeXenL6RMv10055026m X. laevis.S
JGI 4.1 gw1.310.83.1 X. tropicalis
JGI 4.1 e_gw1.310.82.1 X. tropicalis
JGI 4.1 e_gw1.310.83.1 X. tropicalis
ENSEMBL 4.1 ENSXETT00000012172 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_3100005 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_3100016 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_3100008 X. tropicalis
JGI 4.1 estExt_Genewise1.C_3100008 X. tropicalis
JGI 4.1 estExt_Genewise1.C_3100080 X. tropicalis
JGI 4.1 estExt_Genewise1.C_3100081 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_310000005 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_310000016 X. tropicalis
JGI 4.1 gw1.310.10.1 X. tropicalis
JGI 4.1 gw1.310.82.1 X. tropicalis
JGI 4.1 e_gw1.310.10.1 X. tropicalis

mRNAs from cDNA libraries (9)

Clone Accession Species Library Anatomy Stage
NM_203728 X. tropicalis
IMAGE:5382264 BC061320 X. tropicalis NICHD_XGC_Emb6 whole organism NF stage 14 to NF stage 19
XM_041576454 X. laevis.L
XM_018236320 X. laevis.L
NM_001094700 X. laevis.S
XM_018237564 X. laevis.S
IMAGE:6863500 BC084077 X. laevis.S NICHD_XGC_Emb1 whole organism NF stage 10
XM_018236319 X. laevis.L
XM_041576453 X. laevis.L

ESTs (126)

100 ESTs displayed. View all

Clone Accession 5'/3' Species Library Anatomy Stage
IMAGE:7615910 CX392614 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7561273 CX464759 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7616792 CX361261 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7558898 CX498349 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7546060 CX498980 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
THdA044l01 CR586163 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
IMAGE:7567442 CX508552 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
THdA006l23 CR576079 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
THdA014n16 CR566587 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
TTbA061i18 CR422509 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
IMAGE:5382264 BQ393169 5' X. tropicalis NICHD_XGC_Emb6 whole organism NF stage 14 to NF stage 19
TNeu090o04 AL800586 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu096i03 AL791386 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu092b07 AL781011 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu047g04 AL659519 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
THdA048h10 CR584218 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
THdA043j12 CR580285 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
TGas001d10 AL594833 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas019d22 AL630969 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
L1G11g10 AL639053 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas033e07 AL648408 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas049m14 AL649613 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas063f05 AL675241 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas064f05 AL678327 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas081b24 AL776745 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas105i14 AL956584 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas130c12 AL959235 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas139f07 AL963295 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas083i03 AL966006 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:8913084 EL824821 5' X. tropicalis NICHD_XGC_tropTe1 testis frog
IMAGE:8855093 EL816993 5' X. tropicalis NICHD_XGC_tropTe1 testis frog
IMAGE:8890011 EL848905 5' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
IMAGE:6988312 CF220425 5' X. tropicalis NICHD_XGC_Emb5 whole organism NF stage 10 to NF stage 13
IMAGE:8917647 EL830917 5' X. tropicalis NICHD_XGC_tropTe1 testis frog
IMAGE:7025871 CF785572 5' X. tropicalis XtSt10-30 whole organism NF stage 10 to NF stage 29 and 30
IMAGE:7574863 CX441647 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7525210 CX442753 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7527003 CX443943 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7743226 DN035618 5' X. tropicalis NIH_XGC_tropLiv1 liver frog
IMAGE:7542706 CX449942 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7671772 CX879743 5' X. tropicalis NIH_XGC_tropBrn4 brain frog
IMAGE:7542929 CX458170 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7603886 CX395948 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7541230 CX462889 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:8855093 EL816994 3' X. tropicalis NICHD_XGC_tropTe1 testis frog
rst113g01 DC165436 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:7025871 CF785571 3' X. tropicalis XtSt10-30 whole organism NF stage 10 to NF stage 29 and 30
TGas064f05 BX745639 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas081b24 BX752651 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas105i14 BX756932 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas139f07 BX760045 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas130c12 BX760956 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7574863 CX441646 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7542706 CX449941 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7542929 CX458169 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7541230 CX462888 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7561273 CX464758 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7558898 CX498348 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7567442 CX508551 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TNeu090o04 BX690137 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu092b07 BX696035 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TTbA061i18 CR422510 3' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
THdA006l23 CR576080 3' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
THdA043j12 CR580286 3' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
THdA048h10 CR584219 3' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
IMAGE:7616792 CX361260 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7603886 DR893551 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7615910 DR896741 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7671772 CX879742 3' X. tropicalis NIH_XGC_tropBrn4 brain frog
IMAGE:7743226 DN035617 3' X. tropicalis NIH_XGC_tropLiv1 liver frog
IMAGE:8855789 EL817949 3' X. tropicalis NICHD_XGC_tropTe1 testis frog
IMAGE:8913084 EL824822 3' X. tropicalis NICHD_XGC_tropTe1 testis frog
IMAGE:8917647 EL830918 3' X. tropicalis NICHD_XGC_tropTe1 testis frog
IMAGE:8890011 EL848906 3' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
IMAGE:6636423 BU910591 5' X. laevis.S NICHD_XGC_Emb1 whole organism NF stage 10
XL403i22ex BP682384 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL451f04ex BP686462 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL471i06ex BP693756 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL475j14ex BP694792 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL477h01ex BP695419 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL509c12ex BP703645 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL515l21ex BP705723 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL520c07ex BP707221 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL049l12 BJ039518 5' X. laevis.S NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
xlk160l01ex DC064315 5' X. laevis.S Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
IMAGE:4059141 BG018563 5' X. laevis.S Wellcome CRC pCS2+ st19-26 whole organism NF stage 19 to NF stage 26
IMAGE:3400929 BG037561 5' X. laevis.S NICHD_XGC_Emb3 whole organism NF stage 24 to NF stage 25
xl248j10 DC108329 5' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
XL429k17ex BP678386 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
xlk4i24ex DC054089 5' X. laevis.S Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
xl231c02 DC103010 5' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
XL411e07ex BP672630 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
IMAGE:6865757 CA793741 5' X. laevis.S NICHD_XGC_Emb1 whole organism NF stage 10
IMAGE:3748078 BE681152 5' X. laevis.S Xenopus laevis gastrula non normalized whole organism NF stage 10.5 to NF stage 11.5
xl341k21 DC135413 5' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
xl322c15 DC129645 5' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
IMAGE:5161641 CA791457 5' X. laevis.S NICHD_XGC_Emb1 whole organism NF stage 10
xlk72k07ex DC058581 5' X. laevis.S Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
IMAGE:5514748 CF287228 5' X. laevis.S NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32