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Summary Expression Phenotypes Gene Literature (45) GO Terms (4) Nucleotides (219) Proteins (63) Interactants (350) Wiki
XB-GENEPAGE-481888

Show:     All X. tropicalis X. laevis.L

Nucleotide sequences for sox13 - Xenopus tropicalis

RefSeq mRNAs(1)
Models - Gene (21)
Models - mRNA (28)
mRNAs (8)
ESTs (38)

RefSeq mRNAs (1)

Accession Version name Length Protein Species
NM_001017004 NM_001017004.2 transcription factor Sox-13 1941 bp NP_001017004 X. tropicalis

Models - Gene (21)

Source Version Model Species
NCBI 10.0 XBXT10g016812 X. tropicalis
ENSEMBL 10.0 sox13 X. tropicalis
Xenbase 9.1 gene24574 X. tropicalis
ENSEMBL 9.1 sox13 X. tropicalis
JGI 7.1 Xetro.A01276 X. tropicalis
ENSEMBL 4.1 ENSXETG00000017139 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_429000001 X. tropicalis
JGI 4.1 e_gw1.429.20.1 X. tropicalis
JGI 4.1 e_gw1.429.85.1 X. tropicalis
JGI 4.1 e_gw1.429.86.1 X. tropicalis
JGI 4.1 e_gw1.429.87.1 X. tropicalis
JGI 4.1 e_gw1.429.89.1 X. tropicalis
JGI 4.1 gw1.429.20.1 X. tropicalis
JGI 4.1 gw1.429.85.1 X. tropicalis
JGI 4.1 gw1.429.86.1 X. tropicalis
JGI 4.1 gw1.429.87.1 X. tropicalis
JGI 4.1 gw1.429.89.1 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_429000001 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_429000002 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_429000003 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_429000001 X. tropicalis

mRNAs based on gene models(28)

Source Version Model Species
NCBI 10.0 mRNA083191 X. tropicalis
ENSEMBL 10.0 ENSXETT00000079259 X. tropicalis
ENSEMBL 10.0 ENSXETT00000064129 X. tropicalis
ENSEMBL 10.0 ENSXETT00000116085 X. tropicalis
ENSEMBL 10.0 ENSXETT00000037344 X. tropicalis
Xenbase 9.1 rna48885 X. tropicalis
ENSEMBL 9.1 ENSXETT00000064129 X. tropicalis
ENSEMBL 9.1 ENSXETT00000079259 X. tropicalis
ENSEMBL 9.1 ENSXETT00000037344 X. tropicalis
JGI 7.1 Xetro.A01276.2 X. tropicalis
JGI 7.1 Xetro.A01276.3 X. tropicalis
JGI 7.1 Xetro.A01276.1 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_429000001 X. tropicalis
ENSEMBL 4.1 ENSXETT00000037344 X. tropicalis
JGI 4.1 e_gw1.429.20.1 X. tropicalis
JGI 4.1 e_gw1.429.85.1 X. tropicalis
JGI 4.1 e_gw1.429.86.1 X. tropicalis
JGI 4.1 e_gw1.429.87.1 X. tropicalis
JGI 4.1 e_gw1.429.89.1 X. tropicalis
JGI 4.1 gw1.429.20.1 X. tropicalis
JGI 4.1 gw1.429.85.1 X. tropicalis
JGI 4.1 gw1.429.86.1 X. tropicalis
JGI 4.1 gw1.429.87.1 X. tropicalis
JGI 4.1 gw1.429.89.1 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_429000001 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_429000002 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_429000003 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_429000001 X. tropicalis

mRNAs from cDNA libraries (8)

Clone Accession Species Library Anatomy Stage
NM_001017004 X. tropicalis
TGas067m20 CR762311 X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
XM_018091271 X. tropicalis
XM_018091270 X. tropicalis
XM_012963160 X. tropicalis
XM_012963155 X. tropicalis
XM_018091269 X. tropicalis
XM_012963150 X. tropicalis

ESTs (38)

Clone Accession 5'/3' Species Library Anatomy Stage
IMAGE:8886052 EL843066 5' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
IMAGE:8928635 EL676978 5' X. tropicalis NICHD_XGC_tropThy1 thymus frog
IMAGE:8926848 EL673824 5' X. tropicalis NICHD_XGC_tropThy1 thymus frog
IMAGE:8923318 EL665057 5' X. tropicalis NICHD_XGC_tropThy1 thymus frog
st19n03 DC168497 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:7633183 CX374304 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7594847 CX331926 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7592697 DR890348 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7669981 CX876940 5' X. tropicalis NIH_XGC_tropBrn4 brain frog
IMAGE:7521125 CX469038 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
THdA050l04 CR585487 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
THdA004k08 CR563971 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
TTbA012i21 CR408820 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TGas071p22 AL773936 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TTpA037j22 BX745226 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
TNeu140i04 AL802470 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TGas029k20 AL652461 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TNeu093d07 AL779209 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TGas067m20 AL682432 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TNeu055g15 AL676811 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu058p14 AL674392 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
IMAGE:7027099 CF784756 5' X. tropicalis XtSt10-30 whole organism NF stage 10 to NF stage 29 and 30
L1G12b11 AL643546 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:8886052 EL843067 3' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
IMAGE:8928635 EL676977 3' X. tropicalis NICHD_XGC_tropThy1 thymus frog
IMAGE:8923318 EL665056 3' X. tropicalis NICHD_XGC_tropThy1 thymus frog
rst19n03 DC138413 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:7594847 DR890802 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7669981 CX876939 3' X. tropicalis NIH_XGC_tropBrn4 brain frog
IMAGE:7521125 CX469037 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
THdA052o14 CR587070 3' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
THdA050l04 CR585488 3' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
THdA004k08 CR563972 3' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
TTbA012i21 CR408821 3' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TGas067m20 BX748381 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TNeu093d07 BX693163 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu055g15 BX685857 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
IMAGE:7027099 CF784755 3' X. tropicalis XtSt10-30 whole organism NF stage 10 to NF stage 29 and 30