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Summary Expression Phenotypes Gene Literature (23) GO Terms (29) Nucleotides (102) Proteins (46) Interactants (277) Wiki
XB-GENEPAGE-1018268

Show:     All X. tropicalis X. laevis

Nucleotide sequences for sox1 - All

RefSeq mRNAs(3)
Models - Gene (30)
Models - mRNA (30)
mRNAs (10)
ESTs (26)

RefSeq mRNAs (3)

Accession Version Protein Name Length Protein Species
NM_001080996 NM_001080996.1 transcription factor Sox-1 3132 bp NP_001074465 X. tropicalis
NM_001095674 NM_001095674.1 transcription factor Sox-1 2755 bp NP_001089143 X. laevis.S
XM_018247191 XM_018247191.2 transcription factor Sox-1 2861 bp XP_018102680 X. laevis.L

Models - Gene (30)

Source Version Model Species
NCBI 10.1 XBXL10_1g7810 X. laevis.L
NCBI 10.1 XBXL10_1g10493 X. laevis.S
NCBI 10.0 XBXT10g013681 X. tropicalis
Xenbase 9.2 gene8918 X. laevis.S
Xenbase 9.2 gene9219 X. laevis.L
JGI 9.1 Xelaev18015596m.g X. laevis.S
JGI 9.1 Xelaev18013062m.g X. laevis.L
Xenbase 9.1 gene5720 X. tropicalis
JGI 8.0 Xetrov14009442m.g X. tropicalis
JGI 7.2 Xelaev16019234m.g X. laevis.S
JGI 7.1 Xetro.B01666 X. tropicalis
JGI 6.0 XeXenL6RMv10032554m.g X. laevis.S
JGI 6.0 XeXenL6RMv10021907m.g X. laevis.S
ENSEMBL 4.1 ENSXETG00000001902 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_42000020 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_42000007 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_420007 X. tropicalis
JGI 4.1 e_gw1.42.23.1 X. tropicalis
JGI 4.1 e_gw1.42.44.1 X. tropicalis
JGI 4.1 e_gw1.42.47.1 X. tropicalis
JGI 4.1 gw1.42.23.1 X. tropicalis
JGI 4.1 gw1.42.44.1 X. tropicalis
JGI 4.1 gw1.42.47.1 X. tropicalis
JGI 4.1 TIM_gw1.42.44.1 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_420011 X. tropicalis
JGI 4.1 estExt_Genewise1.C_420023 X. tropicalis
JGI 4.1 estExt_Genewise1.C_420043 X. tropicalis
JGI 4.1 estExt_Genewise1.C_420046 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_420019 X. tropicalis
JGI 4.1 C_scaffold_42000010 X. tropicalis

mRNAs based on gene models(30)

Source Version Model Species
NCBI 10.1 XBmRNA19634 X. laevis.S
NCBI 10.1 XBmRNA14716 X. laevis.L
NCBI 10.0 mRNA067675 X. tropicalis
Xenbase 9.2 rna26779 X. laevis.L
Xenbase 9.2 rna25976 X. laevis.S
Xenbase 9.1 rna18532 X. tropicalis
JGI 9.1 Xelaev18015596m X. laevis.S
JGI 9.1 Xelaev18013062m X. laevis.L
JGI 8.0 Xetrov14009442m X. tropicalis
JGI 7.2 Xelaev16019234m X. laevis.S
JGI 7.1 Xetro.B01666.1 X. tropicalis
JGI 6.0 XeXenL6RMv10021907m X. laevis.S
JGI 6.0 XeXenL6RMv10032554m X. laevis.S
JGI 4.1 gw1.42.23.1 X. tropicalis
JGI 4.1 gw1.42.44.1 X. tropicalis
JGI 4.1 C_scaffold_42000010 X. tropicalis
JGI 4.1 TIM_gw1.42.44.1 X. tropicalis
JGI 4.1 gw1.42.47.1 X. tropicalis
JGI 4.1 e_gw1.42.23.1 X. tropicalis
JGI 4.1 e_gw1.42.44.1 X. tropicalis
JGI 4.1 e_gw1.42.47.1 X. tropicalis
ENSEMBL 4.1 ENSXETT00000004030 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_420019 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_420007 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_420011 X. tropicalis
JGI 4.1 estExt_Genewise1.C_420023 X. tropicalis
JGI 4.1 estExt_Genewise1.C_420043 X. tropicalis
JGI 4.1 estExt_Genewise1.C_420046 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_42000020 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_42000007 X. tropicalis

mRNAs from cDNA libraries (10)

Clone Accession Species Library Anatomy Stage
IMAGE:7652489 BC121846 X. tropicalis NIH_XGC_tropBrn3 brain frog
IMAGE:7663004 BC159121 X. tropicalis NIH_XGC_tropBrn3 brain frog
EF192052 X. tropicalis
NM_001080996 X. tropicalis
AB219572 X. laevis.S
IMAGE:9041277 BC169643 X. laevis.S
EF192051 X. laevis.S
EF672727 X. laevis.S
NM_001095674 X. laevis.S
XM_018247191 X. laevis.L

ESTs (26)

Clone Accession 5'/3' Species Library Anatomy Stage
THdA022f04 CR586771 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
st20o23 DC169082 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
sox1-HAR134 AL642062 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TTpA019f18 BX714926 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
sox1-HAR135 AL595157 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TTbA003f08 CR410610 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
IMAGE:7652489 CX815166 5' X. tropicalis NIH_XGC_tropBrn3 brain frog
IMAGE:7706448 CX958620 5' X. tropicalis NIH_XGC_tropTe5 testis frog
IMAGE:7663004 CX846184 5' X. tropicalis NIH_XGC_tropBrn3 brain frog
THdA038m13 CR569260 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
IMAGE:7663348 CX846254 5' X. tropicalis NIH_XGC_tropBrn3 brain frog
THdA038m13 CR569261 3' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
IMAGE:7706448 CX958619 3' X. tropicalis NIH_XGC_tropTe5 testis frog
rst20o23 DC138888 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
TTbA003f08 CR410611 3' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
IMAGE:7663348 CX846253 3' X. tropicalis NIH_XGC_tropBrn3 brain frog
THdA022f04 CR586772 3' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
TTpA019f18 BX714927 3' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
IMAGE:7652489 CX815165 3' X. tropicalis NIH_XGC_tropBrn3 brain frog
IMAGE:7663004 CX846183 3' X. tropicalis NIH_XGC_tropBrn3 brain frog
IMAGE:6862453 CA986222 5' X. laevis.S NICHD_XGC_Emb1 whole organism NF stage 10
IMAGE:7975908 DR725304 5' X. laevis.S NICHD_XGC_Emb9 whole organism NF stage 17 to NF stage 19
IMAGE:8318742 DY575362 5' X. laevis.S NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
IMAGE:5570958 BQ734304 5' X. laevis.S NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
XL060p19 BJ058922 5' X. laevis.S NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL060p19 BJ077431 3' X. laevis.S NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25