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Summary Expression Phenotypes Gene Literature (23) GO Terms (3) Nucleotides (116) Proteins (59) Interactants (64) Wiki
XB-GENEPAGE-1011298

Show:     All X. tropicalis X. laevis.L

Nucleotide sequences for scn8a - All

RefSeq mRNAs(11)
Models - Gene (24)
Models - mRNA (36)
mRNAs (16)
ESTs (22)

RefSeq mRNAs (11)

Accession Version name Length Protein Species
NM_001374728 sodium channel protein type 8 subunit alpha isoform 1 6412 bp NP_001361657 X. tropicalis
NM_001016886 sodium channel protein type 8 subunit alpha isoform 2 1889 bp NP_001016886 X. tropicalis
XM_041582565 XP_041438499.1 sodium channel protein type 8 subunit alpha isoform X2 9720 bp XP_041438499 X. laevis.L
XM_018248632 XP_018104121.2 sodium channel protein type 8 subunit alpha isoform X3 9758 bp XP_018104121 X. laevis.S
XM_041584448 XP_041440382.1 sodium channel protein type 8 subunit alpha isoform X1 9791 bp XP_041440382 X. laevis.S
XM_041584449 XP_041440383.1 sodium channel protein type 8 subunit alpha isoform X2 9791 bp XP_041440383 X. laevis.S
XM_041584450 XP_041440384.1 sodium channel protein type 8 subunit alpha isoform X1 10021 bp XP_041440384 X. laevis.S
XM_041584451 XP_041440385.1 sodium channel protein type 8 subunit alpha isoform X1 9905 bp XP_041440385 X. laevis.S
XM_041584452 XP_041440386.1 sodium channel protein type 8 subunit alpha isoform X4 9758 bp XP_041440386 X. laevis.S
XM_041584453 XP_041440387.1 sodium channel protein type 8 subunit alpha isoform X5 8505 bp XP_041440387 X. laevis.S
XM_041582564 XP_041438498.1 sodium channel protein type 8 subunit alpha isoform X1 9720 bp XP_041438498 X. laevis.L

Models - Gene (24)

Source Version Model Species
NCBI 10.0 XBXT10g004483 X. tropicalis
NCBI 10.1 XBXL10_1g8192 X. laevis.L
NCBI 10.1 XBXL10_1g10803 X. laevis.S
ENSEMBL 10.0 scn8a X. tropicalis
Xenbase 9.1 gene29237 X. tropicalis
ENSEMBL 9.1 gmppa X. tropicalis
JGI 7.1 Xetro.B01438 X. tropicalis
JGI 6.0 XeXenL6RMv10027202m.g X. laevis.L
ENSEMBL 4.1 ENSXETG00000007301 X. tropicalis
JGI 4.1 C_scaffold_67000021 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_670054 X. tropicalis
JGI 4.1 e_gw1.67.153.1 X. tropicalis
JGI 4.1 e_gw1.67.261.1 X. tropicalis
JGI 4.1 e_gw1.67.8.1 X. tropicalis
JGI 4.1 gw1.67.153.1 X. tropicalis
JGI 4.1 gw1.67.261.1 X. tropicalis
JGI 4.1 gw1.67.8.1 X. tropicalis
JGI 4.1 estExt_Genewise1.C_670008 X. tropicalis
JGI 4.1 estExt_Genewise1.C_670153 X. tropicalis
JGI 4.1 estExt_Genewise1.C_670258 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_670083 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_670020 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_67000014 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_67000083 X. tropicalis

mRNAs based on gene models(36)

Source Version Model Species
NCBI 10.0 mRNA022311 X. tropicalis
NCBI 10.1 XBmRNA15495 X. laevis.L
NCBI 10.1 XBmRNA20325 X. laevis.S
ENSEMBL 10.0 ENSXETT00000015904 X. tropicalis
ENSEMBL 10.0 ENSXETT00000101205 X. tropicalis
ENSEMBL 10.0 ENSXETT00000112430 X. tropicalis
ENSEMBL 10.0 ENSXETT00000119449 X. tropicalis
Xenbase 9.1 rna56322 X. tropicalis
ENSEMBL 9.1 ENSXETT00000015904 X. tropicalis
ENSEMBL 9.1 ENSXETT00000088160 X. tropicalis
ENSEMBL 9.1 ENSXETT00000075196 X. tropicalis
ENSEMBL 9.1 ENSXETT00000104132 X. tropicalis
ENSEMBL 9.1 ENSXETT00000070127 X. tropicalis
ENSEMBL 9.1 ENSXETT00000101205 X. tropicalis
ENSEMBL 9.1 ENSXETT00000082259 X. tropicalis
ENSEMBL 9.1 ENSXETT00000084754 X. tropicalis
ENSEMBL 9.1 ENSXETT00000085740 X. tropicalis
ENSEMBL 9.1 ENSXETT00000092354 X. tropicalis
JGI 7.1 Xetro.B01438.1 X. tropicalis
JGI 6.0 XeXenL6RMv10027202m X. laevis.L
JGI 4.1 C_scaffold_67000021 X. tropicalis
ENSEMBL 4.1 ENSXETT00000015904 X. tropicalis
JGI 4.1 e_gw1.67.153.1 X. tropicalis
JGI 4.1 e_gw1.67.261.1 X. tropicalis
JGI 4.1 e_gw1.67.8.1 X. tropicalis
JGI 4.1 gw1.67.153.1 X. tropicalis
JGI 4.1 gw1.67.261.1 X. tropicalis
JGI 4.1 gw1.67.8.1 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_670054 X. tropicalis
JGI 4.1 estExt_Genewise1.C_670008 X. tropicalis
JGI 4.1 estExt_Genewise1.C_670153 X. tropicalis
JGI 4.1 estExt_Genewise1.C_670258 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_670083 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_670020 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_67000014 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_67000083 X. tropicalis

mRNAs from cDNA libraries (16)

Clone Accession Species Library Anatomy Stage
NM_001016886 X. tropicalis
TEgg142o08 CR848577 X. tropicalis
BK007942 X. tropicalis
NM_001374728 X. tropicalis
XM_031895987 X. tropicalis
XM_031895986 X. tropicalis
XM_031895985 X. tropicalis
XM_041584453 X. laevis.S
XM_041584452 X. laevis.S
XM_041584451 X. laevis.S
XM_041584450 X. laevis.S
XM_041584449 X. laevis.S
XM_041584448 X. laevis.S
XM_018248632 X. laevis.S
XM_041582565 X. laevis.L
XM_041582564 X. laevis.L

ESTs (22)

Clone Accession 5'/3' Species Library Anatomy Stage
IMAGE:9013225 EL858801 5' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
IMAGE:7532974 CX434305 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7565648 CX482386 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7565017 CX475701 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7567333 CX507463 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7648656 CX808130 5' X. tropicalis NIH_XGC_tropBrn2 brain frog
IMAGE:7643786 CX799395 5' X. tropicalis NIH_XGC_tropBrn2 brain frog
THdA046g19 CR585353 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
IMAGE:7094804 CK656329 5' X. tropicalis XtSt10-30 whole organism NF stage 10 to NF stage 29 and 30
TGas033e23 AL648416 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas001a17 AL594553 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TNeu033f18 AL655989 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
IMAGE:9013225 EL858802 3' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
IMAGE:7703434 CX939906 3' X. tropicalis NIH_XGC_tropTe5 testis frog
IMAGE:7532974 DR888669 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7643786 CX799394 3' X. tropicalis NIH_XGC_tropBrn2 brain frog
IMAGE:7648656 CX808129 3' X. tropicalis NIH_XGC_tropBrn2 brain frog
IMAGE:7567333 CX507462 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7565648 CX482385 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7565017 CX475700 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
THdA046g19 CR585354 3' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
za99e07 AW159460 5' X. laevis.L Xenopus EST library brain NF stage 45 to NF stage 66