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Summary Expression Phenotypes Gene Literature (0) GO Terms (1) Nucleotides (162) Proteins (69) Interactants (6) Wiki
XB-GENEPAGE-1002724

Show:     All X. tropicalis X. laevis.L

Nucleotide sequences for prpf40b - All

RefSeq mRNAs(13)
Models - Gene (23)
Models - mRNA (40)
mRNAs (13)
ESTs (61)

RefSeq mRNAs (13)

Accession Version name Length Protein Species
XM_012957766 XM_012957766.3 pre-mRNA-processing factor 40 homolog B isoform X1 3572 bp XP_012813220 X. tropicalis
XM_018091675 XM_018091675.2 pre-mRNA-processing factor 40 homolog B isoform X2 3569 bp XP_017947164 X. tropicalis
XM_012957768 XM_012957768.3 pre-mRNA-processing factor 40 homolog B isoform X4 4714 bp XP_012813222 X. tropicalis
XM_012957770 XM_012957770.3 pre-mRNA-processing factor 40 homolog B isoform X5 3568 bp XP_012813224 X. tropicalis
XM_031897142 XM_031897142.1 XP_031753002.1 pre-mRNA-processing factor 40 homolog B isoform X3 3542 bp XP_031753002 X. tropicalis
XM_018247349 XM_018247349.2 pre-mRNA-processing factor 40 homolog B isoform X1 3301 bp XP_018102838 X. laevis.L
XM_018247350 XM_018247350.2 pre-mRNA-processing factor 40 homolog B isoform X2 3297 bp XP_018102839 X. laevis.L
XM_018247351 XM_018247351.2 pre-mRNA-processing factor 40 homolog B isoform X3 3273 bp XP_018102840 X. laevis.L
XM_018249972 XM_018249972.2 pre-mRNA-processing factor 40 homolog B isoform X1 3547 bp XP_018105461 X. laevis.S
XM_018249973 XM_018249973.2 pre-mRNA-processing factor 40 homolog B isoform X2 3543 bp XP_018105462 X. laevis.S
XM_041582481 XM_041582481.1 XP_041438415.1 pre-mRNA-processing factor 40 homolog B isoform X4 3216 bp XP_041438415 X. laevis.L
XM_041584364 XM_041584364.1 XP_041440298.1 pre-mRNA-processing factor 40 homolog B isoform X3 3477 bp XP_041440298 X. laevis.S
XM_041584365 XM_041584365.1 XP_041440299.1 pre-mRNA-processing factor 40 homolog B isoform X4 3305 bp XP_041440299 X. laevis.S

Models - Gene (23)

Source Version Model Species
NCBI 10.1 XBXL10_1g10649 X. laevis.S
NCBI 10.1 XBXL10_1g7982 X. laevis.L
Xenbase 9.1 gene21460 X. tropicalis
ENSEMBL 10.0 prpf40b X. tropicalis
Xenbase 9.2 gene20024 X. laevis.S
Xenbase 9.2 gene13590 X. laevis.L
ENSEMBL 9.1 prpf40b X. tropicalis
JGI 7.1 Xetro.B01253 X. tropicalis
ENSEMBL 4.1 ENSXETG00000000580 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_1300028 X. tropicalis
JGI 4.1 gw1.130.177.1 X. tropicalis
JGI 4.1 gw1.130.83.1 X. tropicalis
JGI 4.1 gw1.130.84.1 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_1300015 X. tropicalis
JGI 4.1 e_gw1.130.177.1 X. tropicalis
JGI 4.1 e_gw1.130.83.1 X. tropicalis
JGI 4.1 e_gw1.130.84.1 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1300082 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1300083 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1300174 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_1300010 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_130000029 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_130000011 X. tropicalis

mRNAs based on gene models(40)

Source Version Model Species
NCBI 10.1 XBmRNA15089 X. laevis.L
NCBI 10.1 XBmRNA19993 X. laevis.S
ENSEMBL 10.0 ENSXETT00000083645 X. tropicalis
ENSEMBL 10.0 ENSXETT00000098571 X. tropicalis
ENSEMBL 10.0 ENSXETT00000001271 X. tropicalis
ENSEMBL 10.0 ENSXETT00000078559 X. tropicalis
ENSEMBL 10.0 ENSXETT00000091772 X. tropicalis
Xenbase 9.1 rna43876 X. tropicalis
Xenbase 9.2 rna39547 X. laevis.L
Xenbase 9.2 rna58439 X. laevis.S
ENSEMBL 9.1 ENSXETT00000091772 X. tropicalis
ENSEMBL 9.1 ENSXETT00000083645 X. tropicalis
ENSEMBL 9.1 ENSXETT00000078559 X. tropicalis
ENSEMBL 9.1 ENSXETT00000001271 X. tropicalis
ENSEMBL 9.1 ENSXETT00000098571 X. tropicalis
ENSEMBL 9.1 ENSXETT00000085063 X. tropicalis
ENSEMBL 9.1 ENSXETT00000100183 X. tropicalis
ENSEMBL 9.1 ENSXETT00000094162 X. tropicalis
ENSEMBL 9.1 ENSXETT00000100031 X. tropicalis
ENSEMBL 9.1 ENSXETT00000075436 X. tropicalis
JGI 7.1 Xetro.B01253.5 X. tropicalis
JGI 7.1 Xetro.B01253.2 X. tropicalis
JGI 7.1 Xetro.B01253.3 X. tropicalis
JGI 7.1 Xetro.B01253.1 X. tropicalis
JGI 7.1 Xetro.B01253.4 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_1300028 X. tropicalis
ENSEMBL 4.1 ENSXETT00000001271 X. tropicalis
JGI 4.1 e_gw1.130.177.1 X. tropicalis
JGI 4.1 e_gw1.130.83.1 X. tropicalis
JGI 4.1 e_gw1.130.84.1 X. tropicalis
JGI 4.1 gw1.130.177.1 X. tropicalis
JGI 4.1 gw1.130.83.1 X. tropicalis
JGI 4.1 gw1.130.84.1 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_1300015 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1300082 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1300083 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1300174 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_1300010 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_130000029 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_130000011 X. tropicalis

mRNAs from cDNA libraries (13)

Clone Accession Species Library Anatomy Stage
XM_012957770 X. tropicalis
XM_012957768 X. tropicalis
XM_018091675 X. tropicalis
XM_012957766 X. tropicalis
XM_031897142 X. tropicalis
XM_018249973 X. laevis.S
XM_018249972 X. laevis.S
XM_018247351 X. laevis.L
XM_018247350 X. laevis.L
XM_018247349 X. laevis.L
XM_041584365 X. laevis.S
XM_041584364 X. laevis.S
XM_041582481 X. laevis.L

ESTs (61)

Clone Accession 5'/3' Species Library Anatomy Stage
IMAGE:8883861 EL839338 5' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
IMAGE:8914774 EL838243 5' X. tropicalis NICHD_XGC_tropTe1 testis frog
IMAGE:8922079 EL836338 5' X. tropicalis NICHD_XGC_tropTe1 testis frog
IMAGE:8854316 EL816113 5' X. tropicalis NICHD_XGC_tropTe1 testis frog
IMAGE:8960821 EL661195 5' X. tropicalis NICHD_XGC_tropInt_63 intestine unspecified stage
IMAGE:8955850 EL653899 5' X. tropicalis NICHD_XGC_tropInt_62 intestine frog
st33a16 DC172785 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
CAAO8343 CX955779 5' X. tropicalis NIH_XGC_tropTe5 testis frog
IMAGE:7631742 CX397295 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7615896 CX392812 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7602042 CX365640 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7599129 CX343340 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7542524 CX450003 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7575407 CX442423 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7564106 CX474725 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7561706 CX465751 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7558971 CX498514 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7559890 CX515333 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7717668 CX979472 5' X. tropicalis NIH_XGC_tropInt1 intestine frog
IMAGE:7707721 CX960578 5' X. tropicalis NIH_XGC_tropTe5 testis frog
IMAGE:7794539 CX929127 5' X. tropicalis NIH_XGC_tropTe4 testis frog
IMAGE:7641661 CX795535 5' X. tropicalis NIH_XGC_tropBrn2 brain frog
IMAGE:7519305 CX478687 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7527735 CX444854 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7524893 CX439593 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7529462 CX426510 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
THdA039o07 CR580575 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
THdA039o06 CR574955 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
TTbA078b07 CR435098 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TTbA013k11 CR408934 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TGas125a10 AL962061 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas048g16 AL646232 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TTpA006i16 BX712987 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
TNeu140d18 AL797708 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
IMAGE:6989793 CF219390 5' X. tropicalis NICHD_XGC_Emb5 whole organism NF stage 10 to NF stage 13
IMAGE:6983443 CF151576 5' X. tropicalis NICHD_XGC_Emb8 whole organism NF stage 40 to NF stage 45
IMAGE:8883861 EL839339 3' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
IMAGE:8922079 EL836339 3' X. tropicalis NICHD_XGC_tropTe1 testis frog
IMAGE:8854316 EL816114 3' X. tropicalis NICHD_XGC_tropTe1 testis frog
rst9b23 DC145314 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:7558971 CX498513 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7707721 CX960577 3' X. tropicalis NIH_XGC_tropTe5 testis frog
IMAGE:7794539 CX929126 3' X. tropicalis NIH_XGC_tropTe4 testis frog
IMAGE:7641661 CX795534 3' X. tropicalis NIH_XGC_tropBrn2 brain frog
IMAGE:7717668 CX979471 3' X. tropicalis NIH_XGC_tropInt1 intestine frog
IMAGE:7559890 CX515332 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7519305 CX478686 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7564106 CX474724 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7561706 CX465750 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7542524 CX450002 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7575407 CX442422 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7529462 CX426509 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7631742 CX397294 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7615896 CX392811 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7602042 CX365639 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7599129 CX343339 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
THdA039o07 CR580576 3' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
THdA039o06 CR574956 3' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
TTbA078b07 CR435099 3' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TTbA013k11 CR408935 3' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TGas125a10 BX757700 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12