cdh3 Phenotypes

Summary

Expression

Phenotypes

Gene Literature (103)

XB-GENEPAGE-482276

Gene Symbol: cdh3 Gene Name: cadherin 3

Anatomical Phenotypes Phenotypes manually curated with terms from the Xenopus phenotype ontology covering anatomical, gene ontology, and neurobehavioral phenotypes.
abnormal cell adhesion (7 sources), abnormal axial mesoderm morphology (3 sources), abnormal gastrulation (3 sources), decreased cell adhesion in mesodermal cell (3 sources), abnormal animal hemisphere morphology (2 sources), abnormal tail morphology (2 sources), decreased length of anterior-posterior axis (2 sources), abnormal axial mesoderm (1 source), abnormal axis elongation (1 source), abnormal blastopore morphology (1 source), abnormal epidermis morphology (1 source), abnormal epidermis outer layer morphology (1 source), abnormal incomplete closing of the blastopore (1 source), abnormal mesodermal cell morphology (1 source), absent eye (1 source), absent head (1 source), decreased size of the eye (1 source), decreased size of the head (1 source)

Anatomical Phenotypes

Phenotypes manually curated with terms from the Xenopus phenotype ontology covering anatomical, gene ontology, and neurobehavioral phenotypes.

abnormal cell adhesion (7 sources), abnormal axial mesoderm morphology (3 sources), abnormal gastrulation (3 sources), decreased cell adhesion in mesodermal cell (3 sources), abnormal animal hemisphere morphology (2 sources), abnormal tail morphology (2 sources), decreased length of anterior-posterior axis (2 sources), abnormal axial mesoderm (1 source), abnormal axis elongation (1 source), abnormal blastopore morphology (1 source), abnormal epidermis morphology (1 source), abnormal epidermis outer layer morphology (1 source), abnormal incomplete closing of the blastopore (1 source), abnormal mesodermal cell morphology (1 source), absent eye (1 source), absent head (1 source), decreased size of the eye (1 source), decreased size of the head (1 source)

Expression Phenotypes Gene expression phenotype annotations where the gene of interest has been disrupted (manipulated) or is the gene assayed (assayed). Computed annotations are derived from differential expression analysis from Xenbase processed GEO data with the criteria of a TPM >= 1, FDR <= 0.05 and an absolute LogFC >= 2.
Manual annotations: cdh3 manipulated (9 sources), cdh3 assayed (13 sources)
Computed annotations: cdh3 assayed (1 source)

Experiments (Reagents) These are short form descriptions of experiments using reagents targeting the gene of interest.
Xla Wt + cdh3 MO (4 sources), Xla Wt + cdh3 MO (4 sources), Xla Wt + cdh3del_2240-2699 (3 sources), Xla Wt + cdh3 (2 sources), Xla Wt + cdh3 MO (2 sources), Xla Wt + cdh3 MO (2 sources), Xla Wt + cdh3del_2240-2699 (2 sources), Xla Wt + KD-Pak1 + cdh3 MO + cdh4 MO (2 sources), Xla Wt + cdh3 MO (1 source), Xla Wt + cdh3 MO (1 source), Xla Wt + cdh3del_2240-2699 (1 source), Xla Wt + cdh3del_2240-2699 (1 source), Xla Wt + KD-Pak1 + cdh3 MO (1 source), Xtr Wt + cdh3 MO (1 source)

Experiments (Reagents)

These are short form descriptions of experiments using reagents targeting the gene of interest.

Xla Wt + cdh3 MO (4 sources), Xla Wt + cdh3 MO (4 sources), Xla Wt + cdh3del_2240-2699 (3 sources), Xla Wt + cdh3 (2 sources), Xla Wt + cdh3 MO (2 sources), Xla Wt + cdh3 MO (2 sources), Xla Wt + cdh3del_2240-2699 (2 sources), Xla Wt + KD-Pak1 + cdh3 MO + cdh4 MO (2 sources), Xla Wt + cdh3 MO (1 source), Xla Wt + cdh3 MO (1 source), Xla Wt + cdh3del_2240-2699 (1 source), Xla Wt + cdh3del_2240-2699 (1 source), Xla Wt + KD-Pak1 + cdh3 MO (1 source), Xtr Wt + cdh3 MO (1 source)

Monarch Ortholog Phenotypes These phenotypes are associated with this gene with a has phenotype relation via Monarch.
Human (40 sources): Abnormality of dental morphology, Abnormality of limb bone morphology, Abnormality of macular pigmentation, Abnormality of retinal pigmentation, Abnormality of the orbital region, Abnormality of vision, Absent eyebrow, Blindness, Brittle hair, Camptodactyly, Carious teeth, Ectodermal dysplasia, Ectrodactyly, Fine hair, Finger syndactyly, Freckling, Hyperkeratosis, Immunologic hypersensitivity, Joint contracture of the hand, Macular degeneration, Macular dystrophy, Melanocytic nevus, Microdontia, Nystagmus, Pili torti, Reduced terminal:vellus ratio, Reduced visual acuity, Retinopathy, Selective tooth agenesis, Short stature, Skeletal dysplasia, Sparse body hair, Sparse eyelashes, Sparse scalp hair, Split hand, Strabismus, Syndactyly, Widely spaced teeth, obsolete Hypotrichosis, obsolete Sparse and thin eyebrow [+]
Mouse (5 sources): abnormal mammary gland development, abnormal mammary gland morphology, mammary gland alveolar hyperplasia, mammary gland duct hyperplasia, mammary gland hyperplasia
View all ortholog results at Monarch