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Summary Expression Phenotypes Gene Literature (50) GO Terms (4) Nucleotides (100) Proteins (53) Interactants (567) Wiki
XB-GENEPAGE-972153

Papers associated with ids



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3 paper(s) referencing morpholinos

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The sulfotransferase XB5850668.L is required to apportion embryonic ectodermal domains., Marchak A, Neilson KM, Majumdar HD, Yamauchi K, Klein SL, Moody SA., Dev Dyn. December 1, 2023; 252 (12): 1407-1427.                  


Advances in the Xenopus immunome: Diversification, expansion, and contraction., Dimitrakopoulou D, Khwatenge CN, James-Zorn C, Paiola M, Bellin EW, Tian Y, Sundararaj N, Polak EJ, Grayfer L, Barnard D, Ohta Y, Horb M, Sang Y, Robert J., Dev Comp Immunol. August 1, 2023; 145 104734.    


A comparison of amphibian (Xenopus laevis) tadpole and adult frog macrophages., Hossainey MRH, Yaparla A, Uzzaman Z, Moore T, Grayfer L., Dev Comp Immunol. April 1, 2023; 141 104647.      


High-Throughput, Comprehensive Single-Cell Proteomic Analysis of Xenopus laevis Embryos at the 50-Cell Stage Using a Microplate-Based MICROFASP System., Zhang Z, Dubiak KM, Shishkova E, Huber PW, Coon JJ, Dovichi NJ., Anal Chem. February 22, 2022; 94 (7): 3254-3259.


New Findings on LMO7 Transcripts, Proteins and Regulatory Regions in Human and Vertebrate Model Organisms and the Intracellular Distribution in Skeletal Muscle Cells., Gomes G, do Amaral MJ, Bagri KM, Vasconcellos LM, Almeida MDS, Alvares LE, Mermelstein C., Int J Mol Sci. November 28, 2021; 22 (23):                           


Markov state models of proton- and pore-dependent activation in a pentameric ligand-gated ion channel., Bergh C, Heusser SA, Howard R, Lindahl E., Elife. October 15, 2021; 10                                             


The gastrin-releasing peptide/bombesin system revisited by a reverse-evolutionary study considering Xenopus., Hirooka A, Hamada M, Fujiyama D, Takanami K, Kobayashi Y, Oti T, Katayama Y, Sakamoto T, Sakamoto H., Sci Rep. June 25, 2021; 11 (1): 13315.              


Spatio-temporal mRNA tracking in the early zebrafish embryo., Holler K, Neuschulz A, Drewe-Boß P, Mintcheva J, Spanjaard B, Arsiè R, Ohler U, Landthaler M, Junker JP., Nat Commun. June 7, 2021; 12 (1): 3358.            


Anaplastic lymphoma kinase (alk), a neuroblastoma associated gene, is expressed in neural crest domains during embryonic development of Xenopus., Moreno MM, Barrell WB, Godwin A, Guille M, Liu KJ., Gene Expr Patterns. June 1, 2021; 40 119183.          


Mapping single-cell atlases throughout Metazoa unravels cell type evolution., Tarashansky AJ, Musser JM, Khariton M, Li P, Arendt D, Quake SR, Wang B., Elife. May 4, 2021; 10                             


tRFtarget: a database for transfer RNA-derived fragment targets., Li N, Shan N, Lu L, Wang Z., Nucleic Acids Res. January 8, 2021; 49 (D1): D254-D260.        


Heterologous functional expression of ascidian Nav1 channels and close relationship with the evolutionary ancestor of vertebrate Nav channels., Kawai T, Hashimoto M, Eguchi N, Nishino JM, Jinno Y, Mori-Kreiner R, Aspåker M, Chiba D, Ohtsuka Y, Kawanabe A, Nishino AS, Okamura Y., J Biol Chem. January 1, 2021; 296 100783.                  


H4K20 Methylation Is Differently Regulated by Dilution and Demethylation in Proliferating and Cell-Cycle-Arrested Xenopus Embryos., Schuh L, Loos C, Pokrovsky D, Imhof A, Rupp RAW, Marr C., Cell Syst. December 16, 2020; 11 (6): 653-662.e8.          


DNA methylation dynamics underlie metamorphic gene regulation programs in Xenopus tadpole brain., Kyono Y, Raj S, Sifuentes CJ, Buisine N, Sachs L, Denver RJ., Dev Biol. June 15, 2020; 462 (2): 180-196.                                                    


Conservation and divergence of protein pathways in the vertebrate heart., Federspiel JD, Tandon P, Wilczewski CM, Wasson L, Herring LE, Venkatesh SS, Cristea IM, Conlon FL., PLoS Biol. September 6, 2019; 17 (9): e3000437.                                                    


A Gustatory Receptor GR8 Tunes Specifically to D-Fructose in the Common Cutworm Spodoptera litura., Liu XL, Yan Q, Yang YL, Hou W, Miao CL, Peng YC, Dong SL., Insects. August 26, 2019; 10 (9):           


Involvement of G-quadruplex regions in mammalian replication origin activity., Prorok P, Artufel M, Aze A, Coulombe P, Peiffer I, Lacroix L, Guédin A, Mergny JL, Damaschke J, Schepers A, Cayrou C, Teulade-Fichou MP, Ballester B, Méchali M., Nat Commun. July 22, 2019; 10 (1): 3274.              


Identification of undecylenic acid as EAG channel inhibitor using surface plasmon resonance-based screen of KCNH channels., Wang ZJ, Tiwari PB, Üren A, Brelidze TI., BMC Pharmacol Toxicol. July 17, 2019; 20 (1): 42.                        


Microscale Reversed-Phase Liquid Chromatography/Capillary Zone Electrophoresis-Tandem Mass Spectrometry for Deep and Highly Sensitive Bottom-Up Proteomics: Identification of 7500 Proteins with Five Micrograms of an MCF7 Proteome Digest., Yang Z, Shen X, Chen D, Sun L., Anal Chem. September 4, 2018; 90 (17): 10479-10486.


Crystal structures of the mitochondrial deacylase Sirtuin 4 reveal isoform-specific acyl recognition and regulation features., Pannek M, Simic Z, Fuszard M, Meleshin M, Rotili D, Mai A, Schutkowski M, Steegborn C., Nat Commun. November 15, 2017; 8 (1): 1513.        


Identification and comparative analyses of Siamois cluster genes in Xenopus laevis and tropicalis., Haramoto Y, Saijyo T, Tanaka T, Furuno N, Suzuki A, Ito Y, Kondo M, Taira M, Takahashi S., Dev Biol. June 15, 2017; 426 (2): 374-383.                  


Simple adjustment of the sequence weight algorithm remarkably enhances PSI-BLAST performance., Oda T, Lim K, Tomii K., BMC Bioinformatics. June 2, 2017; 18 (1): 288.            


Spemann organizer transcriptome induction by early beta-catenin, Wnt, Nodal, and Siamois signals in Xenopus laevis., Ding Y, Ploper D, Sosa EA, Colozza G, Moriyama Y, Benitez MD, Zhang K, Merkurjev D, De Robertis EM., Proc Natl Acad Sci U S A. April 11, 2017; 114 (15): E3081-E3090.                        


Over 4100 protein identifications from a Xenopus laevis fertilized egg digest using reversed-phase chromatographic prefractionation followed by capillary zone electrophoresis-electrospray ionization-tandem mass spectrometry analysis., Yan X, Sun L, Zhu G, Cox OF, Dovichi NJ., Proteomics. December 1, 2016; 16 (23): 2945-2952.


Structural Basis for Negative Allosteric Modulation of GluN2A-Containing NMDA Receptors., Yi F, Mou TC, Dorsett KN, Volkmann RA, Menniti FS, Sprang SR, Hansen KB., Neuron. September 21, 2016; 91 (6): 1316-1329.                


Genetics, Morphology, Advertisement Calls, and Historical Records Distinguish Six New Polyploid Species of African Clawed Frog (Xenopus, Pipidae) from West and Central Africa., Evans BJ, Carter TF, Greenbaum E, Gvoždík V, Kelley DB, McLaughlin PJ, Pauwels OS, Portik DM, Stanley EL, Tinsley RC, Tobias ML, Blackburn DC., PLoS One. December 16, 2015; 10 (12): e0142823.                                                      


The Xenopus ORFeome: A resource that enables functional genomics., Grant IM, Balcha D, Hao T, Shen Y, Trivedi P, Patrushev I, Fortriede JD, Karpinka JB, Liu L, Zorn AM, Stukenberg PT, Hill DE, Gilchrist MJ., Dev Biol. December 15, 2015; 408 (2): 345-57.          


Opportunities and limits of the one gene approach: the ability of Atoh1 to differentiate and maintain hair cells depends on the molecular context., Jahan I, Pan N, Fritzsch B., Front Cell Neurosci. February 5, 2015; 9 26.  


Distinct features of cap binding by eIF4E1b proteins., Kubacka D, Miguel RN, Minshall N, Darzynkiewicz E, Standart N, Zuberek J., J Mol Biol. January 30, 2015; 427 (2): 387-405.              


Finding Our Way through Phenotypes., Deans AR, Lewis SE, Huala E, Anzaldo SS, Ashburner M, Balhoff JP, Blackburn DC, Blake JA, Burleigh JG, Chanet B, Cooper LD, Courtot M, Csösz S, Cui H, Dahdul W, Das S, Dececchi TA, Dettai A, Diogo R, Druzinsky RE, Dumontier M, Franz NM, Friedrich F, Gkoutos GV, Haendel M, Harmon LJ, Hayamizu TF, He Y, Hines HM, Ibrahim N, Jackson LM, Jaiswal P, James-Zorn C, Köhler S, Lecointre G, Lapp H, Lawrence CJ, Le Novère N, Lundberg JG, Macklin J, Mast AR, Midford PE, Mikó I, Mungall CJ, Oellrich A, Osumi-Sutherland D, Parkinson H, Ramírez MJ, Richter S, Robinson PN, Ruttenberg A, Schulz KS, Segerdell E, Seltmann KC, Sharkey MJ, Smith AD, Smith B, Specht CD, Squires RB, Thacker RW, Thessen A, Fernandez-Triana J, Vihinen M, Vize PD, Vogt L, Wall CE, Walls RL, Westerfeld M, Wharton RA, Wirkner CS, Woolley JB, Yoder MJ, Zorn AM, Mabee P., PLoS Biol. January 6, 2015; 13 (1): e1002033.    


Xenbase, the Xenopus model organism database; new virtualized system, data types and genomes., Karpinka JB, Fortriede JD, Burns KA, James-Zorn C, Ponferrada VG, Lee J, Lee J, Karimi K, Zorn AM, Vize PD., Nucleic Acids Res. January 1, 2015; 43 (Database issue): D756-63.    


A recurrent de novo mutation in KCNC1 causes progressive myoclonus epilepsy., Muona M, Berkovic SF, Dibbens LM, Oliver KL, Maljevic S, Bayly MA, Joensuu T, Canafoglia L, Franceschetti S, Michelucci R, Markkinen S, Heron SE, Hildebrand MS, Andermann E, Andermann F, Gambardella A, Tinuper P, Licchetta L, Scheffer IE, Criscuolo C, Filla A, Ferlazzo E, Ahmad J, Ahmad A, Baykan B, Said E, Topcu M, Riguzzi P, King MD, Ozkara C, Andrade DM, Engelsen BA, Crespel A, Lindenau M, Lohmann E, Saletti V, Massano J, Privitera M, Espay AJ, Kauffmann B, Duchowny M, Møller RS, Straussberg R, Afawi Z, Ben-Zeev B, Samocha KE, Daly MJ, Petrou S, Lerche H, Palotie A, Lehesjoki AE., Nat Genet. January 1, 2015; 47 (1): 39-46.      


Evolution of the vertebrate Pax4/6 class of genes with focus on its novel member, the Pax10 gene., Feiner N, Meyer A, Kuraku S., Genome Biol Evol. June 19, 2014; 6 (7): 1635-51.              


Genome-wide expression profile of the response to spinal cord injury in Xenopus laevis reveals extensive differences between regenerative and non-regenerative stages., Lee-Liu D, Moreno M, Almonacid LI, Tapia VS, Muñoz R, von Marées J, Gaete M, Melo F, Larraín J., Neural Dev. May 22, 2014; 9 12.              


NMR structures of the human α7 nAChR transmembrane domain and associated anesthetic binding sites., Bondarenko V, Mowrey DD, Tillman TS, Seyoum E, Xu Y, Xu Y, Tang P., Biochim Biophys Acta. May 1, 2014; 1838 (5): 1389-95.


Significant modulation of the hepatic proteome induced by exposure to low temperature in Xenopus laevis., Nagasawa K, Tanizaki Y, Okui T, Watarai A, Ueda S, Kato T., Biol Open. August 21, 2013; 2 (10): 1057-69.                  


Random parameter sampling of a generic three-tier MAPK cascade model reveals major factors affecting its versatile dynamics., Mai Z, Liu H., PLoS One. January 1, 2013; 8 (1): e54441.          


From expression cloning to gene modeling: the development of Xenopus gene sequence resources., Gilchrist MJ., Genesis. March 1, 2012; 50 (3): 143-54.        


New clues to understand how CENP-A maintains centromere identity., Sánchez P, Losada A., Cell Div. May 9, 2011; 6 (1): 11.  


Gene expression profiles of lens regeneration and development in Xenopus laevis., Malloch EL, Perry KJ, Fukui L, Johnson VR, Wever J, Beck CW, King MW, King MW, Henry JJ., Dev Dyn. September 1, 2009; 238 (9): 2340-56.                                    


The shroom family proteins play broad roles in the morphogenesis of thickened epithelial sheets., Lee C, Lee C, Lee C, Le MP, Wallingford JB., Dev Dyn. June 1, 2009; 238 (6): 1480-91.                            


Xenopus cDNA microarray identification of genes with endodermal organ expression., Park EC, Hayata T, Cho KW, Han JK., Dev Dyn. June 1, 2007; 236 (6): 1633-49.                    


Characterization of the agr2 gene, a homologue of X. laevis anterior gradient 2, from the zebrafish, Danio rerio., Shih LJ, Lu YF, Chen YH, Lin CC, Chen JA, Hwang SP., Gene Expr Patterns. February 1, 2007; 7 (4): 452-60.                


Zebrafish id2 developmental expression pattern contains evolutionary conserved and species-specific characteristics., Chong SW, Nguyen TT, Chu LT, Jiang YJ, Korzh V., Dev Dyn. December 1, 2005; 234 (4): 1055-63.


Alternative splicing generates multiple SMRT transcripts encoding conserved repressor domains linked to variable transcription factor interaction domains., Malartre M, Short S, Sharpe C., Nucleic Acids Res. September 1, 2004; 32 (15): 4676-86.


Control of K+ channel gating by protein phosphorylation: structural switches of the inactivation gate., Antz C, Bauer T, Kalbacher H, Frank R, Covarrubias M, Kalbitzer HR, Ruppersberg JP, Baukrowitz T, Fakler B., Nat Struct Biol. February 1, 1999; 6 (2): 146-50.


Determinants of slow gating in ClC-0, the voltage-gated chloride channel of Torpedo marmorata., Fong P, Rehfeldt A, Jentsch TJ., Am J Physiol. April 1, 1998; 274 (4): C966-73.


Id gene activity during Xenopus embryogenesis., Zhang H, Reynaud S, Kloc M, Etkin LD, Spohr G., Mech Dev. April 1, 1995; 50 (2-3): 119-30.

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