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Ubiquitin C-terminal hydrolase37 regulates Tcf7 DNA binding for the activation of Wnt signalling. , Han W, Lee H , Lee H , Han JK ., Sci Rep. February 15, 2017; 7 42590.
Brg1 chromatin remodeling ATPase balances germ layer patterning by amplifying the transcriptional burst at midblastula transition. , Wagner G, Singhal N, Nicetto D, Straub T, Kremmer E, Rupp RAW ., PLoS Genet. May 12, 2017; 13 (5): e1006757.
Genome-wide analysis of dorsal and ventral transcriptomes of the Xenopus laevis gastrula. , Ding Y , Colozza G , Zhang K, Moriyama Y , Ploper D, Sosa EA, Benitez MDJ, De Robertis EM ., Dev Biol. June 15, 2017; 426 (2): 176-187.
Identification of new regulators of embryonic patterning and morphogenesis in Xenopus gastrulae by RNA sequencing. , Popov IK, Kwon T , Crossman DK, Crowley MR, Wallingford JB , Chang C ., Dev Biol. June 15, 2017; 426 (2): 429-441.
A catalog of Xenopus tropicalis transcription factors and their regional expression in the early gastrula stage embryo. , Blitz IL , Paraiso KD , Patrushev I , Chiu WTY , Cho KWY , Gilchrist MJ ., Dev Biol. June 15, 2017; 426 (2): 409-417.
Conservatism and variability of gene expression profiles among homeologous transcription factors in Xenopus laevis. , Watanabe M, Yasuoka Y , Mawaribuchi S, Kuretani A, Ito M, Kondo M, Ochi H , Ogino H , Fukui A , Taira M , Kinoshita T., Dev Biol. June 15, 2017; 426 (2): 301-324.
High variability of expression profiles of homeologous genes for Wnt, Hh, Notch, and Hippo signaling pathways in Xenopus laevis. , Michiue T , Yamamoto T , Yasuoka Y , Goto T , Ikeda T, Nagura K, Nakayama T , Taira M , Kinoshita T., Dev Biol. June 15, 2017; 426 (2): 270-290.
Timing is everything: Reiterative Wnt, BMP and RA signaling regulate developmental competence during endoderm organogenesis. , Rankin SA , Rankin SA , McCracken KW, Luedeke DM, Han L , Wells JM , Shannon JM, Zorn AM ., Dev Biol. February 1, 2018; 434 (1): 121-132.
Xbra and Smad-1 cooperate to activate the transcription of neural repressor ventx1.1 in Xenopus embryos. , Kumar S , Kumar S , Umair Z, Yoon J, Lee U, Kim SC, Park JB , Lee JY , Kim J ., Sci Rep. July 30, 2018; 8 (1): 11391.
Xenopus SOX5 enhances myogenic transcription indirectly through transrepression. , Della Gaspera B , Chesneau A, Weill L, Charbonnier F, Chanoine C ., Dev Biol. October 15, 2018; 442 (2): 262-275.
Fam46a regulates BMP-dependent pre-placodal ectoderm differentiation in Xenopus. , Watanabe T, Yamamoto T , Tsukano K, Hirano S, Horikawa A, Michiue T ., Development. October 26, 2018; 145 (20):
Maternal Huluwa dictates the embryonic body axis through β-catenin in vertebrates. , Yan L, Chen J , Zhu X, Sun J, Wu X, Shen W, Zhang W, Tao Q , Tao Q , Meng A., Science. November 23, 2018; 362 (6417):
Ventx1.1 as a Direct Repressor of Early Neural Gene zic3 in Xenopus laevis. , Umair Z, Kumar S , Kim DH, Rafiq K , Kumar V , Kim S, Park JB , Lee JY , Lee U, Kim J ., Mol Cells. December 31, 2018; 41 (12): 1061-1071.
Leukemia inhibitory factor signaling in Xenopus embryo: Insights from gain of function analysis and dominant negative mutant of the receptor. , Jalvy S, Veschambre P, Fédou S, Rezvani HR, Thézé N , Thiébaud P ., Dev Biol. March 15, 2019; 447 (2): 200-213.
Ventx1.1 competes with a transcriptional activator Xcad2 to regulate negatively its own expression. , Kumar S , Kumar S , Umair Z, Kumar V , Lee U, Choi SC, Kim J ., BMB Rep. June 1, 2019; 52 (6): 403-408.
The regulatory proteins DSCR6 and Ezh2 oppositely regulate Stat3 transcriptional activity in mesoderm patterning during Xenopus development. , Loreti M, Shi DL , Carron C., J Biol Chem. February 28, 2020; 295 (9): 2724-2735.
The secreted BMP antagonist ERFE is required for the development of a functional circulatory system in Xenopus. , Melchert J, Henningfeld KA , Richts S, Lingner T, Jonigk D, Pieler T ., Dev Biol. March 15, 2020; 459 (2): 138-148.
Natural size variation among embryos leads to the corresponding scaling in gene expression. , Leibovich A, Edri T, Klein SL, Moody SA , Fainsod A ., Dev Biol. June 15, 2020; 462 (2): 165-179.
Foxd4l1.1 negatively regulates transcription of neural repressor ventx1.1 during neuroectoderm formation in Xenopus embryos. , Kumar S , Kumar S , Umair Z, Kumar V , Kumar S , Lee U, Kim J ., Sci Rep. October 8, 2020; 10 (1): 16780.
R-spondins are BMP receptor antagonists in Xenopus early embryonic development. , Lee H , Lee H , Seidl C, Sun R, Glinka A , Niehrs C ., Nat Commun. November 4, 2020; 11 (1): 5570.
Combinatorial transcription factor activities on open chromatin induce embryonic heterogeneity in vertebrates. , Bright AR, van Genesen S, Li Q , Grasso A, Frölich S, van der Sande M, van Heeringen SJ, Veenstra GJC ., EMBO J. May 3, 2021; 40 (9): e104913.
Pinhead antagonizes Admp to promote notochord formation. , Itoh K, Ossipova O, Sokol SY ., iScience. May 7, 2021; 24 (6): 102520.
BMP signaling is enhanced intracellularly by FHL3 controlling WNT-dependent spatiotemporal emergence of the neural crest. , Alkobtawi M, Pla P, Monsoro-Burq AH ., Cell Rep. June 22, 2021; 35 (12): 109289.
Temporal transcriptomic profiling reveals dynamic changes in gene expression of Xenopus animal cap upon activin treatment. , Satou-Kobayashi Y, Kim JD , Fukamizu A, Asashima M ., Sci Rep. July 15, 2021; 11 (1): 14537.
Reduced Retinoic Acid Signaling During Gastrulation Induces Developmental Microcephaly. , Gur M, Bendelac-Kapon L, Shabtai Y, Pillemer G, Fainsod A ., Front Cell Dev Biol. January 1, 2022; 10 844619.
Lysosomes are required for early dorsal signaling in the Xenopus embryo. , Tejeda-Muñoz N, De Robertis EM ., Proc Natl Acad Sci U S A. April 26, 2022; 119 (17): e2201008119.
Membrane potential drives the exit from pluripotency and cell fate commitment via calcium and mTOR. , Sempou E, Kostiuk V, Zhu J, Cecilia Guerra M, Tyan L, Hwang W, Camacho-Aguilar E, Caplan MJ, Zenisek D, Warmflash A, Owens NDL, Khokha MK ., Nat Commun. November 5, 2022; 13 (1): 6681.
Two Homeobox Transcription Factors, Goosecoid and Ventx1.1, Oppositely Regulate Chordin Transcription in Xenopus Gastrula Embryos. , Kumar V , Umair Z, Lee U, Kim J ., Cells. March 11, 2023; 12 (6):
ZSWIM4 regulates embryonic patterning and BMP signaling by promoting nuclear Smad1 degradation. , Wang C , Liu Z, Zeng Y, Zhou L, Long Q, Hassan IU, Zhang Y , Qi X, Cai D, Mao B , Lu G, Sun J, Yao Y, Deng Y, Zhao Q, Feng B, Zhou Q, Chan WY, Zhao H ., EMBO Rep. February 1, 2024; 25 (2): 646-671.
Cdx1 and Gsc distinctly regulate the transcription of BMP4 target gene ventx3.2 by directly binding to the proximal promoter region in Xenopus gastrulae. , Goutam RS, Kumar V , Lee U, Kim J ., Mol Cells. March 23, 2024; 47 (4): 100058.