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BET activity plays an essential role in control of stem cell attributes in Xenopus. , Huber PB , Rao A, LaBonne C ., Development. July 1, 2024; 151 (13):
Xbra modulates the activity of linker region phosphorylated Smad1 during Xenopus development. , Kumar S , Umair Z, Kumar V , Goutam RS, Park S, Lee U, Kim J ., Sci Rep. April 18, 2024; 14 (1): 8922.
Cdx1 and Gsc distinctly regulate the transcription of BMP4 target gene ventx3.2 by directly binding to the proximal promoter region in Xenopus gastrulae. , Goutam RS, Kumar V , Lee U, Kim J ., Mol Cells. April 1, 2024; 47 (4): 100058.
Competence for neural crest induction is controlled by hydrostatic pressure through Yap. , Alasaadi DN, Alvizi L, Hartmann J, Stillman N, Moghe P, Hiiragi T, Mayor R ., Nat Cell Biol. March 18, 2024;
Cell lineage-guided mass spectrometry reveals increased energy metabolism and reactive oxygen species in the vertebrate organizer. , Baxi AB, Li J, Quach VM, Pade LR, Moody SA , Nemes P ., Proc Natl Acad Sci U S A. February 6, 2024; 121 (6): e2311625121.
ZSWIM4 regulates embryonic patterning and BMP signaling by promoting nuclear Smad1 degradation. , Wang C , Liu Z, Zeng Y, Zhou L, Long Q, Hassan IU, Zhang Y , Qi X, Cai D, Mao B , Lu G, Sun J, Yao Y, Deng Y, Zhao Q, Feng B, Zhou Q, Chan WY, Zhao H ., EMBO Rep. February 1, 2024; 25 (2): 646-671.
Mechanical Tensions Regulate Gene Expression in the Xenopus laevis Axial Tissues. , Eroshkin FM, Fefelova EA, Bredov DV, Orlov EE, Kolyupanova NM, Mazur AM, Sokolov AS, Zhigalova NA, Prokhortchouk EB, Nesterenko AM, Zaraisky AG ., Int J Mol Sci. January 10, 2024; 25 (2):
Mitochondrial leak metabolism induces the Spemann-Mangold Organizer via Hif-1α in Xenopus. , MacColl Garfinkel A, Mnatsakanyan N, Patel JH, Wills AE , Shteyman A, Smith PJS, Alavian KN, Jonas EA, Khokha MK ., Dev Cell. November 20, 2023; 58 (22): 2597-2613.e4.
Gene expression in notochord and nuclei pulposi: a study of gene families across the chordate phylum. , Raghavan R, Coppola U, Wu Y, Ihewulezi C, Negrón-Piñeiro LJ, Maguire JE, Hong J, Cunningham M, Kim HJ , Albert TJ, Ali AM, Saint-Jeannet JP , Ristoratore F, Dahia CL, Di Gregorio A., BMC Ecol Evol. October 27, 2023; 23 (1): 63.
Purine Biosynthesis Pathways Are Required for Myogenesis in Xenopus laevis. , Duperray M, Hardet F, Henriet E, Saint-Marc C, Boué-Grabot E, Daignan-Fornier B, Massé K , Pinson B., Cells. September 28, 2023; 12 (19):
Transmembrane protein 150b attenuates BMP signaling in the Xenopus organizer. , Keum BR, Yeo I, Koo Y, Han W, Choi SC, Kim GH , Han JK ., J Cell Physiol. August 1, 2023; 238 (8): 1850-1866.
The complete dorsal structure is formed from only the blastocoel roof of Xenopus blastula: insight into the gastrulation movement evolutionarily conserved among chordates. , Sato Y, Narasaki I, Kunimoto T, Moriyama Y , Hashimoto C., Dev Genes Evol. June 1, 2023; 233 (1): 1-12.
RAF1 deficiency causes a lethal syndrome that underscores RTK signaling during embryogenesis. , Wong S, Tan YX, Loh AYT, Tan KY, Lee H , Aziz Z, Nelson SF, Özkan E, Kayserili H, Escande-Beillard N, Reversade B ., EMBO Mol Med. May 8, 2023; 15 (5): e17078.
OTUD3: A Lys6 and Lys63 specific deubiquitinase in early vertebrate development. , Job F, Mai C, Villavicencio-Lorini P, Herfurth J, Neuhaus H , Hoffmann K, Pfirrmann T , Hollemann T ., Biochim Biophys Acta Gene Regul Mech. March 1, 2023; 1866 (1): 194901.
Production and characterization of monoclonal antibodies to Xenopus proteins. , Horr B, Kurtz R, Pandey A, Hoffstrom BG, Schock E , LaBonne C , Alfandari D , Alfandari D ., Development. February 15, 2023; 150 (4):
Production and characterization of monoclonal antibodies to xenopus proteins. , Horr B, Kurtz R, Pandey A, Hoffstrom BG, Schock E , LaBonne C , Alfandari D , Alfandari D ., Development. February 14, 2023;
Recognition of H2AK119ub plays an important role in RSF1-regulated early Xenopus development. , Parast SM, Yu D, Chen C , Dickinson AJ , Chang C , Wang H., Front Cell Dev Biol. January 1, 2023; 11 1168643.
Regulation of gene expression downstream of a novel Fgf/Erk pathway during Xenopus development. , Cowell LM, King M , West H, Broadsmith M, Genever P, Pownall ME , Isaacs HV ., PLoS One. January 1, 2023; 18 (10): e0286040.
Reconstructing gene regulatory networks of biological function using differential equations of multilayer perceptrons. , Mao G, Zeng R, Peng J, Zuo K, Pang Z, Liu J ., BMC Bioinformatics. November 24, 2022; 23 (1): 503.
Membrane potential drives the exit from pluripotency and cell fate commitment via calcium and mTOR. , Sempou E, Kostiuk V, Zhu J, Cecilia Guerra M, Tyan L, Hwang W, Camacho-Aguilar E, Caplan MJ, Zenisek D, Warmflash A, Owens NDL, Khokha MK ., Nat Commun. November 5, 2022; 13 (1): 6681.
Engagement of Foxh1 in chromatin regulation revealed by protein interactome analyses. , Zhou JJ , Pham PD, Han H, Wang W, Cho KWY., Dev Growth Differ. August 1, 2022; 64 (6): 297-305.
Normal Table of Xenopus development: a new graphical resource. , Zahn N , James-Zorn C , Ponferrada VG , Adams DS , Grzymkowski J, Buchholz DR , Nascone-Yoder NM , Horb M , Moody SA , Vize PD , Zorn AM ., Development. July 15, 2022; 149 (14):
HMCES modulates the transcriptional regulation of nodal/activin and BMP signaling in mESCs. , Liang T, Bai J, Zhou W, Lin H, Ma S, Zhu X, Tao Q , Xi Q., Cell Rep. July 12, 2022; 40 (2): 111038.
Uncovering the mesendoderm gene regulatory network through multi-omic data integration. , Jansen C, Paraiso KD , Zhou JJ , Blitz IL , Fish MB, Charney RM , Cho JS, Yasuoka Y , Sudou N , Bright AR, Wlizla M , Veenstra GJC , Taira M , Zorn AM , Mortazavi A, Cho KWY., Cell Rep. February 15, 2022; 38 (7): 110364.
Xbp1 and Brachyury establish an evolutionarily conserved subcircuit of the notochord gene regulatory network. , Wu Y, Devotta A, José-Edwards DS, Kugler JE, Negrón-Piñeiro LJ, Braslavskaya K, Addy J, Saint-Jeannet JP , Di Gregorio A., Elife. January 20, 2022; 11
FGF-mediated establishment of left- right asymmetry requires Rab7 function in the dorsal mesoderm in Xenopus. , Kreis J, Camuto CM, Elsner CC, Vogel S, Vick P ., Front Cell Dev Biol. January 1, 2022; 10 981762.
Goosecoid Controls Neuroectoderm Specification via Dual Circuits of Direct Repression and Indirect Stimulation in Xenopus Embryos. , Umair Z, Kumar V , Goutam RS, Kumar S , Kumar S , Lee U, Kim J ., Mol Cells. October 31, 2021; 44 (10): 723-735.
The enpp4 ectonucleotidase regulates kidney patterning signalling networks in Xenopus embryos. , Massé K , Bhamra S, Paroissin C, Maneta-Peyret L, Boué-Grabot E, Jones EA ., Commun Biol. October 7, 2021; 4 (1): 1158.
Huntingtin CAG expansion impairs germ layer patterning in synthetic human 2D gastruloids through polarity defects. , Galgoczi S, Ruzo A, Markopoulos C, Yoney A, Phan-Everson T, Li S, Haremaki T , Metzger JJ, Etoc F, Brivanlou AH ., Development. October 1, 2021; 148 (19):
Tril dampens Nodal signaling through Pellino2- and Traf6-mediated activation of Nedd4l. , Kim HS , Green YS, Xie Y, Christian JL ., Proc Natl Acad Sci U S A. September 7, 2021; 118 (36):
A systemic cell cycle block impacts stage-specific histone modification profiles during Xenopus embryogenesis. , Pokrovsky D, Forné I, Straub T, Imhof A, Rupp RAW ., PLoS Biol. September 1, 2021; 19 (9): e3001377.
Rab7 is required for mesoderm patterning and gastrulation in Xenopus. , Kreis J, Wielath FM, Vick P ., Biol Open. July 15, 2021; 10 (7):
BMP signaling is enhanced intracellularly by FHL3 controlling WNT-dependent spatiotemporal emergence of the neural crest. , Alkobtawi M, Pla P, Monsoro-Burq AH ., Cell Rep. June 22, 2021; 35 (12): 109289.
The cytokine FAM3B/PANDER is an FGFR ligand that promotes posterior development in Xenopus. , Zhang F, Zhu X, Wang P, He Q, Huang H, Zheng T, Li Y, Jia H, Xu L, Zhao H , Colozza G , Tao Q , De Robertis EM , Ding Y ., Proc Natl Acad Sci U S A. May 18, 2021; 118 (20):
Kindlin2 regulates neural crest specification via integrin-independent regulation of the FGF signaling pathway. , Wang H, Wang C , Wang C , Wang C , Long Q, Zhang Y , Wang M, Liu J , Qi X, Cai D, Lu G, Sun J, Yao YG, Chan WY, Chan WY, Deng Y, Zhao H ., Development. May 15, 2021; 148 (10):
Combinatorial transcription factor activities on open chromatin induce embryonic heterogeneity in vertebrates. , Bright AR, van Genesen S, Li Q , Grasso A, Frölich S, van der Sande M, van Heeringen SJ, Veenstra GJC ., EMBO J. May 3, 2021; 40 (9): e104913.
A temporally resolved transcriptome for developing "Keller" explants of the Xenopus laevis dorsal marginal zone. , Kakebeen AD, Huebner RJ, Shindo A, Kwon K, Kwon T , Wills AE , Wallingford JB ., Dev Dyn. May 1, 2021; 250 (5): 717-731.
Furry is required for cell movements during gastrulation and functionally interacts with NDR1. , Cervino AS, Moretti B, Stuckenholz C, Grecco HE, Davidson LA , Davidson LA , Cirio MC ., Sci Rep. March 23, 2021; 11 (1): 6607.
Segregation of brain and organizer precursors is differentially regulated by Nodal signaling at blastula stage. , Castro Colabianchi AM, Tavella MB, Boyadjián López LE, Rubinstein M, Franchini LF, López SL ., Biol Open. February 25, 2021; 10 (2):
Modeling endoderm development and disease in Xenopus. , Edwards NA , Zorn AM ., Curr Top Dev Biol. January 1, 2021; 145 61-90.
Evolution of Somite Compartmentalization: A View From Xenopus. , Della Gaspera B , Weill L, Chanoine C ., Front Cell Dev Biol. January 1, 2021; 9 790847.
Xenopus gpx3 Mediates Posterior Development by Regulating Cell Death during Embryogenesis. , Lee H , Lee H , Ismail T, Kim Y, Chae S, Ryu HY, Lee DS, Kwon TK , Park TJ, Kwon T , Lee HS , Lee HS ., Antioxidants (Basel). December 12, 2020; 9 (12):
Generation of a FOXH1 homozygous knockout human embryonic stem cell line by CRISPR/Cas9 system. , Zhang T, Huang W, Xue X., Stem Cell Res. December 10, 2020; 50 102121.
Identification and characterization of a fibroblast growth factor gene in the planarian Dugesia japonica. , Auwal MA, Kashima M, Nishimura O, Hosoda K, Motoishi M, Kamimura A, Okumura A, Agata K, Umesono Y ., Dev Growth Differ. December 1, 2020; 62 (9): 527-539.
Dusp1 modulates activin/smad2 mediated germ layer specification via FGF signal inhibition in Xenopus embryos. , Umair Z, Kumar S , Rafiq K , Kumar V , Reman ZU, Lee SH, Kim S, Lee JY , Lee U, Kim J ., Anim Cells Syst (Seoul). November 27, 2020; 24 (6): 359-370.
Foxd4l1.1 negatively regulates transcription of neural repressor ventx1.1 during neuroectoderm formation in Xenopus embryos. , Kumar S , Kumar S , Umair Z, Kumar V , Kumar S , Lee U, Kim J ., Sci Rep. October 8, 2020; 10 (1): 16780.
TMEM79/MATTRIN defines a pathway for Frizzled regulation and is required for Xenopus embryogenesis. , Chen M, Amado N, Tan J, Reis A, Ge M, Abreu JG , He X ., Elife. September 14, 2020; 9
Pinhead signaling regulates mesoderm heterogeneity via the FGF receptor-dependent pathway. , Ossipova O, Itoh K, Radu A, Ezan J, Sokol SY ., Development. September 11, 2020; 147 (17):
Brachyury in the gastrula of basal vertebrates. , Bruce AEE, Winklbauer R ., Mech Dev. September 1, 2020; 163 103625.
Chromatin accessibility and histone acetylation in the regulation of competence in early development. , Esmaeili M, Blythe SA , Tobias JW, Zhang K, Yang J , Klein PS ., Dev Biol. June 1, 2020; 462 (1): 20-35.