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ZSWIM4 regulates embryonic patterning and BMP signaling by promoting nuclear Smad1 degradation. , Wang C , Liu Z, Zeng Y, Zhou L, Long Q, Hassan IU, Zhang Y , Qi X, Cai D, Mao B , Lu G, Sun J, Yao Y, Deng Y, Zhao Q, Feng B, Zhou Q, Chan WY, Zhao H ., EMBO Rep. February 1, 2024; 25 (2): 646-671.
Prdm15 acts upstream of Wnt4 signaling in anterior neural development of Xenopus laevis. , Saumweber E, Mzoughi S, Khadra A, Werberger A, Schumann S, Guccione E, Schmeisser MJ, Kühl SJ ., Front Cell Dev Biol. January 1, 2024; 12 1316048.
Recognition of H2AK119ub plays an important role in RSF1-regulated early Xenopus development. , Parast SM, Yu D, Chen C , Dickinson AJ , Chang C , Wang H., Front Cell Dev Biol. January 1, 2023; 11 1168643.
Quantitative analysis of transcriptome dynamics provides novel insights into developmental state transitions. , Johnson K, Freedman S, Braun R, LaBonne C ., BMC Genomics. October 23, 2022; 23 (1): 723.
Differential nuclear import sets the timing of protein access to the embryonic genome. , Nguyen T, Costa EJ, Deibert T, Reyes J, Keber FC, Tomschik M , Stadlmeier M, Gupta M, Kumar CK, Cruz ER, Amodeo A , Gatlin JC , Wühr M ., Nat Commun. October 6, 2022; 13 (1): 5887.
Engagement of Foxh1 in chromatin regulation revealed by protein interactome analyses. , Zhou JJ , Pham PD, Han H, Wang W, Cho KWY., Dev Growth Differ. August 1, 2022; 64 (6): 297-305.
Uncovering the mesendoderm gene regulatory network through multi-omic data integration. , Jansen C, Paraiso KD , Zhou JJ , Blitz IL , Fish MB, Charney RM , Cho JS, Yasuoka Y , Sudou N , Bright AR, Wlizla M , Veenstra GJC , Taira M , Zorn AM , Mortazavi A, Cho KWY., Cell Rep. February 15, 2022; 38 (7): 110364.
Foxd4l1.1 Negatively Regulates Chordin Transcription in Neuroectoderm of Xenopus Gastrula. , Kumar V , Goutam RS, Umair Z, Park S, Lee U, Kim J ., Cells. October 17, 2021; 10 (10):
Huntingtin CAG expansion impairs germ layer patterning in synthetic human 2D gastruloids through polarity defects. , Galgoczi S, Ruzo A, Markopoulos C, Yoney A, Phan-Everson T, Li S, Haremaki T , Metzger JJ, Etoc F, Brivanlou AH ., Development. October 1, 2021; 148 (19):
Tril dampens Nodal signaling through Pellino2- and Traf6-mediated activation of Nedd4l. , Kim HS , Green YS, Xie Y, Christian JL ., Proc Natl Acad Sci U S A. September 7, 2021; 118 (36):
TGF-β1 signaling is essential for tissue regeneration in the Xenopus tadpole tail. , Nakamura M, Yoshida H, Moriyama Y , Kawakita I, Wlizla M , Takebayashi-Suzuki K, Horb ME , Suzuki A ., Biochem Biophys Res Commun. August 6, 2021; 565 91-96.
Temporal transcriptomic profiling reveals dynamic changes in gene expression of Xenopus animal cap upon activin treatment. , Satou-Kobayashi Y, Kim JD , Fukamizu A, Asashima M ., Sci Rep. July 15, 2021; 11 (1): 14537.
Smad2 and Smad3 differentially modulate chordin transcription via direct binding on the distal elements in gastrula Xenopus embryos. , Kumar V , Umair Z, Kumar S , Kumar S , Lee U, Kim J ., Biochem Biophys Res Commun. June 25, 2021; 559 168-175.
Segregation of brain and organizer precursors is differentially regulated by Nodal signaling at blastula stage. , Castro Colabianchi AM, Tavella MB, Boyadjián López LE, Rubinstein M, Franchini LF, López SL ., Biol Open. February 25, 2021; 10 (2):
Dusp1 modulates activin/smad2 mediated germ layer specification via FGF signal inhibition in Xenopus embryos. , Umair Z, Kumar S , Rafiq K , Kumar V , Reman ZU, Lee SH, Kim S, Lee JY , Lee U, Kim J ., Anim Cells Syst (Seoul). November 27, 2020; 24 (6): 359-370.
Pinhead signaling regulates mesoderm heterogeneity via the FGF receptor-dependent pathway. , Ossipova O, Itoh K, Radu A, Ezan J, Sokol SY ., Development. September 11, 2020; 147 (17):
Tbx2 mediates dorsal patterning and germ layer suppression through inhibition of BMP/GDF and Activin/Nodal signaling. , Reich S, Kayastha P, Teegala S , Weinstein DC ., BMC Mol Cell Biol. May 28, 2020; 21 (1): 39.
Rspo2 antagonizes FGF signaling during vertebrate mesoderm formation and patterning. , Reis AH, Sokol SY ., Development. May 27, 2020; 147 (10):
Pinhead signaling regulates mesoderm heterogeneity via FGF receptor-dependent pathway. , Ossipova O, Itoh K, Radu A, Ezan J, Sokol SY ., Development. January 1, 2020;
Repression of Inappropriate Gene Expression in the Vertebrate Embryonic Ectoderm. , Reich S, Weinstein DC ., Genes (Basel). November 6, 2019; 10 (11):
Maternal pluripotency factors initiate extensive chromatin remodelling to predefine first response to inductive signals. , Gentsch GE , Spruce T, Owens NDL, Smith JC ., Nat Commun. September 19, 2019; 10 (1): 4269.
The Spatiotemporal Control of Zygotic Genome Activation. , Gentsch GE , Owens NDL, Smith JC ., iScience. June 28, 2019; 16 485-498.
Role of dipeptidyl peptidase-4 as a potentiator of activin/nodal signaling pathway. , Park DS, Kim K, Jang M, Choi SC., BMB Rep. December 1, 2018; 51 (12): 636-641.
Fam46a regulates BMP-dependent pre-placodal ectoderm differentiation in Xenopus. , Watanabe T, Yamamoto T , Tsukano K, Hirano S, Horikawa A, Michiue T ., Development. October 26, 2018; 145 (20):
A transgenic reporter under control of an es1 promoter/enhancer marks wound epidermis and apical epithelial cap during tail regeneration in Xenopus laevis tadpole. , Sato K , Umesono Y , Mochii M ., Dev Biol. January 15, 2018; 433 (2): 404-415.
Dual control of pcdh8l/PCNS expression and function in Xenopus laevis neural crest cells by adam13/33 via the transcription factors tfap2α and arid3a. , Khedgikar V, Abbruzzese G , Mathavan K, Szydlo H, Cousin H , Alfandari D , Alfandari D ., Elife. August 22, 2017; 6
Similarity in gene-regulatory networks suggests that cancer cells share characteristics of embryonic neural cells. , Zhang Z , Lei A, Xu L, Chen L, Chen Y , Chen Y , Zhang X, Gao Y, Yang X, Zhang M, Cao Y , Cao Y ., J Biol Chem. August 4, 2017; 292 (31): 12842-12859.
Nodal/Activin Pathway is a Conserved Neural Induction Signal in Chordates. , Le Petillon Y, Luxardi G , Scerbo P , Cibois M, Leon A, Subirana L, Irimia M, Kodjabachian L , Escriva H, Bertrand S., Nat Ecol Evol. August 1, 2017; 1 (8): 1192-1200.
Id genes are essential for early heart formation. , Cunningham TJ, Yu MS, McKeithan WL, Spiering S, Carrette F, Huang CT, Bushway PJ, Tierney M, Albini S, Giacca M, Mano M, Puri PL, Sacco A, Ruiz-Lozano P, Riou JF , Umbhauer M , Duester G , Mercola M , Colas AR., Genes Dev. July 1, 2017; 31 (13): 1325-1338.
Identification of new regulators of embryonic patterning and morphogenesis in Xenopus gastrulae by RNA sequencing. , Popov IK, Kwon T , Crossman DK, Crowley MR, Wallingford JB , Chang C ., Dev Biol. June 15, 2017; 426 (2): 429-441.
Dissecting BMP signaling input into the gene regulatory networks driving specification of the blood stem cell lineage. , Kirmizitas A, Meiklejohn S, Ciau-Uitz A , Stephenson R , Patient R ., Proc Natl Acad Sci U S A. June 6, 2017; 114 (23): 5814-5821.
A gene regulatory program controlling early Xenopus mesendoderm formation: Network conservation and motifs. , Charney RM , Paraiso KD , Blitz IL , Cho KWY., Semin Cell Dev Biol. June 1, 2017; 66 12-24.
Histone H3 Lysine 27 Trimethylation Leads to Loss of Mesendodermal Competence During Gastrulation in Zebrafish Ectodermal Cells. , Shiomi T, Muto A, Hozumi S, Kimura H, Kikuchi Y., Zoolog Sci. February 1, 2017; 34 (1): 64-71.
Eomesodermin-At Dawn of Cell Fate Decisions During Early Embryogenesis. , Probst S, Arnold SJ., Curr Top Dev Biol. January 1, 2017; 122 93-115.
Loss of expression of protein phosphatase magnesium-dependent 1A during kidney injury promotes fibrotic maladaptive repair. , Samarakoon R, Rehfuss A, Khakoo NS, Falke LL, Dobberfuhl AD, Helo S, Overstreet JM, Goldschmeding R, Higgins PJ., FASEB J. October 1, 2016; 30 (10): 3308-3320.
Zic2 mutation causes holoprosencephaly via disruption of NODAL signalling. , Houtmeyers R, Tchouate Gainkam O, Glanville-Jones HA, Van den Bosch B, Chappell A, Barratt KS, Souopgui J, Tejpar S, Arkell RM., Hum Mol Genet. September 15, 2016; 25 (18): 3946-3959.
Capsaicin inhibits the Wnt/ β-catenin signaling pathway by down-regulating PP2A. , Park DS, Yoon GH, Lee HS , Choi SC., Biochem Biophys Res Commun. September 9, 2016; 478 (1): 455-461.
Nodal signalling in Xenopus: the role of Xnr5 in left/ right asymmetry and heart development. , Tadjuidje E , Kofron M , Mir A, Wylie C , Heasman J , Cha SW ., Open Biol. August 1, 2016; 6 (8):
FoxH1 mediates a Grg4 and Smad2 dependent transcriptional switch in Nodal signaling during Xenopus mesoderm development. , Reid CD, Steiner AB, Yaklichkin S , Lu Q, Wang S, Hennessy M, Kessler DS ., Dev Biol. June 1, 2016; 414 (1): 34-44.
Monitoring Smad Activity In Vivo Using the Xenopus Model System. , Montagner M, Martello G , Piccolo S ., Methods Mol Biol. January 1, 2016; 1344 245-59.
Pou5f3.2-induced proliferative state of embryonic cells during gastrulation of Xenopus laevis embryo. , Nishitani E, Li C, Lee J , Hotta H, Katayama Y, Yamaguchi M, Kinoshita T., Dev Growth Differ. December 1, 2015; 57 (9): 591-600.
Small C-terminal Domain Phosphatase 3 Dephosphorylates the Linker Sites of Receptor-regulated Smads (R-Smads) to Ensure Transforming Growth Factor β (TGFβ)-mediated Germ Layer Induction in Xenopus Embryos. , Sun G , Hu Z, Min Z, Yan X, Guan Z, Su H, Fu Y, Ma X, Chen YG , Zhang MQ, Tao Q , Wu W., J Biol Chem. July 10, 2015; 290 (28): 17239-49.
At new heights - endodermal lineages in development and disease. , Ober EA, Grapin-Botton A., Development. June 1, 2015; 142 (11): 1912-1917.
TGF-β Signaling Regulates the Differentiation of Motile Cilia. , Tözser J, Earwood R, Kato A, Brown J, Tanaka K, Didier R, Megraw TL, Blum M , Kato Y ., Cell Rep. May 19, 2015; 11 (7): 1000-7.
The serpin PN1 is a feedback regulator of FGF signaling in germ layer and primary axis formation. , Acosta H, Iliev D, Grahn TH, Gouignard N , Maccarana M, Griesbach J, Herzmann S, Sagha M, Climent M , Pera EM ., Development. March 15, 2015; 142 (6): 1146-58.
Efficient retina formation requires suppression of both Activin and BMP signaling pathways in pluripotent cells. , Wong KA, Trembley M, Abd Wahab S, Viczian AS ., Biol Open. March 6, 2015; 4 (4): 573-83.
E2a is necessary for Smad2/3-dependent transcription and the direct repression of lefty during gastrulation. , Wills AE , Baker JC ., Dev Cell. February 9, 2015; 32 (3): 345-57.
Antisense Oligonucleotide-Mediated Transcript Knockdown in Zebrafish. , Pauli A, Montague TG, Lennox KA, Behlke MA, Schier AF., PLoS One. January 1, 2015; 10 (10): e0139504.
[The Point Mutation in NOGGIN2 Protein That Enhances Its Ability to Bind Activin]. , Eroshkin FM, Fedina NV, Martynova NY, Bayramov AV, Zaraisky AG ., Bioorg Khim. January 1, 2015; 41 (6): 749-51.
Genome-wide view of TGFβ/ Foxh1 regulation of the early mesendoderm program. , Chiu WT , Charney Le R, Blitz IL , Fish MB, Li Y, Biesinger J, Xie X, Cho KW ., Development. December 1, 2014; 141 (23): 4537-47.