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Transmembrane protein 150b attenuates BMP signaling in the Xenopus organizer. , Keum BR, Yeo I, Koo Y, Han W, Choi SC, Kim GH , Han JK ., J Cell Physiol. August 1, 2023; 238 (8): 1850-1866.
Membrane potential drives the exit from pluripotency and cell fate commitment via calcium and mTOR. , Sempou E, Kostiuk V, Zhu J, Cecilia Guerra M, Tyan L, Hwang W, Camacho-Aguilar E, Caplan MJ, Zenisek D, Warmflash A, Owens NDL, Khokha MK ., Nat Commun. November 5, 2022; 13 (1): 6681.
Nascent transcriptome reveals orchestration of zygotic genome activation in early embryogenesis. , Chen H , Good MC ., Curr Biol. October 10, 2022; 32 (19): 4314-4324.e7.
Uncovering the mesendoderm gene regulatory network through multi-omic data integration. , Jansen C, Paraiso KD , Zhou JJ , Blitz IL , Fish MB, Charney RM , Cho JS, Yasuoka Y , Sudou N , Bright AR, Wlizla M , Veenstra GJC , Taira M , Zorn AM , Mortazavi A, Cho KWY., Cell Rep. February 15, 2022; 38 (7): 110364.
Combinatorial transcription factor activities on open chromatin induce embryonic heterogeneity in vertebrates. , Bright AR, van Genesen S, Li Q , Grasso A, Frölich S, van der Sande M, van Heeringen SJ, Veenstra GJC ., EMBO J. May 3, 2021; 40 (9): e104913.
Modeling endoderm development and disease in Xenopus. , Edwards NA , Zorn AM ., Curr Top Dev Biol. January 1, 2021; 145 61-90.
Dusp1 modulates activin/smad2 mediated germ layer specification via FGF signal inhibition in Xenopus embryos. , Umair Z, Kumar S , Rafiq K , Kumar V , Reman ZU, Lee SH, Kim S, Lee JY , Lee U, Kim J ., Anim Cells Syst (Seoul). November 27, 2020; 24 (6): 359-370.
Hes5.9 Coordinate FGF and Notch Signaling to Modulate Gastrulation via Regulating Cell Fate Specification and Cell Migration in Xenopus tropicalis. , Huang X , Zhang L, Yang S, Zhang Y , Wu M, Chen P., Genes (Basel). November 18, 2020; 11 (11):
Endodermal Maternal Transcription Factors Establish Super-Enhancers during Zygotic Genome Activation. , Paraiso KD , Blitz IL , Coley M, Cheung J, Sudou N , Taira M , Cho KWY ., Cell Rep. June 4, 2019; 27 (10): 2962-2977.e5.
AKT signaling displays multifaceted functions in neural crest development. , Sittewelle M, Monsoro-Burq AH ., Dev Biol. December 1, 2018; 444 Suppl 1 S144-S155.
Roles of Xenopus chemokine ligand CXCLh (XCXCLh) in early embryogenesis. , Goto T , Ito Y , Michiue T ., Dev Growth Differ. May 1, 2018; 60 (4): 226-238.
Nodal/Activin Pathway is a Conserved Neural Induction Signal in Chordates. , Le Petillon Y, Luxardi G , Scerbo P , Cibois M, Leon A, Subirana L, Irimia M, Kodjabachian L , Escriva H, Bertrand S., Nat Ecol Evol. August 1, 2017; 1 (8): 1192-1200.
Lineage commitment of embryonic cells involves MEK1-dependent clearance of pluripotency regulator Ventx2. , Scerbo P , Marchal L, Kodjabachian L ., Elife. June 27, 2017; 6
A catalog of Xenopus tropicalis transcription factors and their regional expression in the early gastrula stage embryo. , Blitz IL , Paraiso KD , Patrushev I , Chiu WTY , Cho KWY , Gilchrist MJ ., Dev Biol. June 15, 2017; 426 (2): 409-417.
Conservatism and variability of gene expression profiles among homeologous transcription factors in Xenopus laevis. , Watanabe M, Yasuoka Y , Mawaribuchi S, Kuretani A, Ito M, Kondo M, Ochi H , Ogino H , Fukui A , Taira M , Kinoshita T., Dev Biol. June 15, 2017; 426 (2): 301-324.
A gene regulatory program controlling early Xenopus mesendoderm formation: Network conservation and motifs. , Charney RM , Paraiso KD , Blitz IL , Cho KWY., Semin Cell Dev Biol. June 1, 2017; 66 12-24.
Ascl1 represses the mesendoderm induction in Xenopus. , Min Z, Lin H, Zhu X, Gao L, Khand AA, Tao Q ., Acta Biochim Biophys Sin (Shanghai). November 1, 2016; 48 (11): 1006-1015.
Gtpbp2 is a positive regulator of Wnt signaling and maintains low levels of the Wnt negative regulator Axin. , Gillis WQ, Kirmizitas A, Iwasaki Y , Ki DH, Wyrick JM, Thomsen GH ., Cell Commun Signal. August 2, 2016; 14 (1): 15.
A novel role for Ascl1 in the regulation of mesendoderm formation via HDAC-dependent antagonism of VegT. , Gao L, Zhu X, Chen G, Ma X, Zhang Y , Zhang Y , Khand AA, Shi H , Gu F, Lin H, Chen Y , Zhang H , He L, Tao Q , Tao Q ., Development. February 1, 2016; 143 (3): 492-503.
Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development. , Owens ND, Blitz IL , Lane MA, Patrushev I , Overton JD, Gilchrist MJ , Cho KW , Khokha MK ., Cell Rep. January 26, 2016; 14 (3): 632-47.
Sebox regulates mesoderm formation in early amphibian embryos. , Chen G, Tan R, Tao Q , Tao Q ., Dev Dyn. November 1, 2015; 244 (11): 1415-26.
PV.1 induced by FGF- Xbra functions as a repressor of neurogenesis in Xenopus embryos. , Yoon J, Kim JH , Lee SY, Kim S, Park JB , Lee JY , Kim J ., BMB Rep. December 1, 2014; 47 (12): 673-8.
Genome-wide view of TGFβ/ Foxh1 regulation of the early mesendoderm program. , Chiu WT , Charney Le R, Blitz IL , Fish MB, Li Y, Biesinger J, Xie X, Cho KW ., Development. December 1, 2014; 141 (23): 4537-47.
Gtpbp2 is required for BMP signaling and mesoderm patterning in Xenopus embryos. , Kirmizitas A, Gillis WQ, Zhu H, Thomsen GH ., Dev Biol. August 15, 2014; 392 (2): 358-67.
Two different network topologies yield bistability in models of mesoderm and anterior mesendoderm specification in amphibians. , Brown LE, King JR, Loose M., J Theor Biol. July 21, 2014; 353 67-77.
High-resolution analysis of gene activity during the Xenopus mid- blastula transition. , Collart C , Owens ND, Bhaw-Rosun L, Cooper B, De Domenico E, Patrushev I , Sesay AK, Smith JN, Smith JC , Gilchrist MJ ., Development. May 1, 2014; 141 (9): 1927-39.
Inference of the Xenopus tropicalis embryonic regulatory network and spatial gene expression patterns. , Zheng Z, Christley S, Chiu WT , Blitz IL , Xie X, Cho KW , Nie Q., BMC Syst Biol. January 8, 2014; 8 3.
The Xenopus Tgfbi is required for embryogenesis through regulation of canonical Wnt signalling. , Wang F, Hu W , Xian J, Ohnuma S , Brenton JD ., Dev Biol. July 1, 2013; 379 (1): 16-27.
Klf4 is required for germ-layer differentiation and body axis patterning during Xenopus embryogenesis. , Cao Q, Zhang X, Lu L, Yang L, Gao J, Gao Y, Ma H, Cao Y ., Development. November 1, 2012; 139 (21): 3950-61.
Conservation and evolutionary divergence in the activity of receptor-regulated smads. , Sorrentino GM , Gillis WQ, Oomen-Hajagos J, Thomsen GH ., Evodevo. October 1, 2012; 3 (1): 22.
The Mix family of homeobox genes--key regulators of mesendoderm formation during vertebrate development. , Pereira LA, Wong MS, Mei Lim S, Stanley EG, Elefanty AG., Dev Biol. July 15, 2012; 367 (2): 163-77.
A developmental requirement for HIRA-dependent H3.3 deposition revealed at gastrulation in Xenopus. , Szenker E, Lacoste N, Almouzni G ., Cell Rep. June 28, 2012; 1 (6): 730-40.
Dynamic in vivo binding of transcription factors to cis-regulatory modules of cer and gsc in the stepwise formation of the Spemann-Mangold organizer. , Sudou N , Yamamoto S, Ogino H , Taira M ., Development. May 1, 2012; 139 (9): 1651-61.
Xenopus Nanos1 is required to prevent endoderm gene expression and apoptosis in primordial germ cells. , Lai F , Singh A, King ML ., Development. April 1, 2012; 139 (8): 1476-86.
Toward an unbiased evolutionary platform for unraveling Xenopus developmental gene networks. , Beer R, Wagner F, Grishkevich V, Peshkin L , Yanai I ., Genesis. March 1, 2012; 50 (3): 186-91.
Transcriptional activation by Oct4 is sufficient for the maintenance and induction of pluripotency. , Hammachi F, Morrison GM, Sharov AA, Livigni A, Narayan S, Papapetrou EP, O'Malley J, Kaji K, Ko MS, Ptashne M, Brickman JM ., Cell Rep. February 23, 2012; 1 (2): 99-109.
Ventx factors function as Nanog-like guardians of developmental potential in Xenopus. , Scerbo P , Girardot F , Vivien C, Markov GV, Luxardi G , Demeneix B , Kodjabachian L , Coen L., PLoS One. January 1, 2012; 7 (5): e36855.
KDEL tagging: a method for generating dominant-negative inhibitors of the secretion of TGF-beta superfamily proteins. , Matsukawa S , Moriyama Y , Hayata T, Sasaki H, Ito Y , Asashima M , Kuroda H ., Int J Dev Biol. January 1, 2012; 56 (5): 351-6.
mNanog possesses dorsal mesoderm-inducing ability by modulating both BMP and Activin/ nodal signaling in Xenopus ectodermal cells. , Miyazaki A, Ishii K, Yamashita S, Nejigane S, Matsukawa S , Ito Y , Onuma Y , Asashima M , Michiue T ., PLoS One. January 1, 2012; 7 (10): e46630.
An essential role for transcription before the MBT in Xenopus laevis. , Skirkanich J , Luxardi G , Yang J , Kodjabachian L , Klein PS ., Dev Biol. September 15, 2011; 357 (2): 478-91.
xCITED2 Induces Neural Genes in Animal Cap Explants of Xenopus Embryos. , Yoon J, Kim JH , Lee OJ, Yu SB , Yu SB , Kim JI , Kim SC, Park JB , Lee JY , Kim J ., Exp Neurobiol. September 1, 2011; 20 (3): 123-9.
HEB and E2A function as SMAD/FOXH1 cofactors. , Yoon SJ , Wills AE , Chuong E, Gupta R , Baker JC ., Genes Dev. August 1, 2011; 25 (15): 1654-61.
Negative autoregulation of Oct3/4 through Cdx1 promotes the onset of gastrulation. , Rousso SZ, Schyr RB, Gur M, Zouela N, Kot-Leibovich H, Shabtai Y, Koutsi-Urshanski N, Baldessari D, Pillemer G, Niehrs C , Fainsod A ., Dev Dyn. April 1, 2011; 240 (4): 796-807.
Early activation of FGF and nodal pathways mediates cardiac specification independently of Wnt/beta-catenin signaling. , Samuel LJ, Latinkić BV., PLoS One. October 28, 2009; 4 (10): e7650.
CDK9/cyclin complexes modulate endoderm induction by direct interaction with Mix.3/ mixer. , Zhu H, Doherty JR, Kuliyev E, Mead PE ., Dev Dyn. June 1, 2009; 238 (6): 1346-57.
Bmp signaling is necessary and sufficient for ventrolateral endoderm specification in Xenopus. , Wills A , Dickinson K, Khokha M , Baker JC ., Dev Dyn. August 1, 2008; 237 (8): 2177-86.
Retinoic acid-mediated patterning of the pre-pancreatic endoderm in Xenopus operates via direct and indirect mechanisms. , Pan FC, Chen Y , Chen Y , Bayha E, Pieler T ., Mech Dev. August 1, 2007; 124 (7-8): 518-31.
Xenopus glucose transporter 1 (xGLUT1) is required for gastrulation movement in Xenopus laevis. , Suzawa K , Yukita A, Hayata T, Goto T , Danno H, Michiue T , Cho KW , Asashima M ., Int J Dev Biol. January 1, 2007; 51 (3): 183-90.
FoxD3 regulation of Nodal in the Spemann organizer is essential for Xenopus dorsal mesoderm development. , Steiner AB, Engleka MJ, Lu Q, Piwarzyk EC, Yaklichkin S , Lefebvre JL, Walters JW, Pineda-Salgado L, Labosky PA, Kessler DS ., Development. December 1, 2006; 133 (24): 4827-38.
Hex acts with beta-catenin to regulate anteroposterior patterning via a Groucho-related co-repressor and Nodal. , Zamparini AL, Watts T, Gardner CE, Tomlinson SR, Johnston GI, Brickman JM ., Development. September 1, 2006; 133 (18): 3709-22.