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Membrane potential drives the exit from pluripotency and cell fate commitment via calcium and mTOR. , Sempou E, Kostiuk V, Zhu J, Cecilia Guerra M, Tyan L, Hwang W, Camacho-Aguilar E, Caplan MJ, Zenisek D, Warmflash A, Owens NDL, Khokha MK ., Nat Commun. November 5, 2022; 13 (1): 6681.
Engagement of Foxh1 in chromatin regulation revealed by protein interactome analyses. , Zhou JJ , Pham PD, Han H, Wang W, Cho KWY., Dev Growth Differ. August 1, 2022; 64 (6): 297-305.
Uncovering the mesendoderm gene regulatory network through multi-omic data integration. , Jansen C, Paraiso KD , Zhou JJ , Blitz IL , Fish MB, Charney RM , Cho JS, Yasuoka Y , Sudou N , Bright AR, Wlizla M , Veenstra GJC , Taira M , Zorn AM , Mortazavi A, Cho KWY., Cell Rep. February 15, 2022; 38 (7): 110364.
Segregation of brain and organizer precursors is differentially regulated by Nodal signaling at blastula stage. , Castro Colabianchi AM, Tavella MB, Boyadjián López LE, Rubinstein M, Franchini LF, López SL ., Biol Open. February 25, 2021; 10 (2):
Generation of a FOXH1 homozygous knockout human embryonic stem cell line by CRISPR/Cas9 system. , Zhang T, Huang W, Xue X., Stem Cell Res. December 10, 2020; 50 102121.
Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endoderm gene regulatory network. , Mukherjee S , Chaturvedi P , Rankin SA , Rankin SA , Fish MB, Wlizla M , Paraiso KD , MacDonald M, Chen X, Weirauch MT, Blitz IL , Cho KW , Zorn AM ., Elife. September 7, 2020; 9
Evolution of cis-regulatory modules for the head organizer gene goosecoid in chordates: comparisons between Branchiostoma and Xenopus. , Yasuoka Y , Tando Y, Kubokawa K, Taira M ., Zoological Lett. August 2, 2019; 5 27.
Endodermal Maternal Transcription Factors Establish Super-Enhancers during Zygotic Genome Activation. , Paraiso KD , Blitz IL , Coley M, Cheung J, Sudou N , Taira M , Cho KWY ., Cell Rep. June 4, 2019; 27 (10): 2962-2977.e5.
Morpholinos Do Not Elicit an Innate Immune Response during Early Xenopus Embryogenesis. , Paraiso KD , Blitz IL , Zhou JJ , Cho KWY ., Dev Cell. May 20, 2019; 49 (4): 643-650.e3.
Transcriptome profiling reveals male- and female-specific gene expression pattern and novel gene candidates for the control of sex determination and gonad development in Xenopus laevis. , Piprek RP, Damulewicz M, Tassan JP , Kloc M , Kubiak JZ ., Dev Genes Evol. May 1, 2019; 229 (2-3): 53-72.
Retinoic acid-induced expression of Hnf1b and Fzd4 is required for pancreas development in Xenopus laevis. , Gere-Becker MB, Pommerenke C, Lingner T, Pieler T ., Development. June 8, 2018; 145 (12):
Conservatism and variability of gene expression profiles among homeologous transcription factors in Xenopus laevis. , Watanabe M, Yasuoka Y , Mawaribuchi S, Kuretani A, Ito M, Kondo M, Ochi H , Ogino H , Fukui A , Taira M , Kinoshita T., Dev Biol. June 15, 2017; 426 (2): 301-324.
A gene regulatory program controlling early Xenopus mesendoderm formation: Network conservation and motifs. , Charney RM , Paraiso KD , Blitz IL , Cho KWY., Semin Cell Dev Biol. June 1, 2017; 66 12-24.
Eomesodermin-At Dawn of Cell Fate Decisions During Early Embryogenesis. , Probst S, Arnold SJ., Curr Top Dev Biol. January 1, 2017; 122 93-115.
FoxH1 mediates a Grg4 and Smad2 dependent transcriptional switch in Nodal signaling during Xenopus mesoderm development. , Reid CD, Steiner AB, Yaklichkin S , Lu Q, Wang S, Hennessy M, Kessler DS ., Dev Biol. June 1, 2016; 414 (1): 34-44.
Predicting Variabilities in Cardiac Gene Expression with a Boolean Network Incorporating Uncertainty. , Grieb M, Burkovski A, Sträng JE, Kraus JM, Groß A, Palm G, Kühl M , Kestler HA., PLoS One. July 16, 2015; 10 (7): e0131832.
At new heights - endodermal lineages in development and disease. , Ober EA, Grapin-Botton A., Development. June 1, 2015; 142 (11): 1912-1917.
Inference of the Xenopus tropicalis embryonic regulatory network and spatial gene expression patterns. , Zheng Z, Christley S, Chiu WT , Blitz IL , Xie X, Cho KW , Nie Q., BMC Syst Biol. January 8, 2014; 8 3.
RAB8B is required for activity and caveolar endocytosis of LRP6. , Demir K, Kirsch N, Beretta CA, Erdmann G, Ingelfinger D, Moro E, Argenton F, Carl M, Niehrs C , Boutros M ., Cell Rep. September 26, 2013; 4 (6): 1224-34.
Klf4 is required for germ-layer differentiation and body axis patterning during Xenopus embryogenesis. , Cao Q, Zhang X, Lu L, Yang L, Gao J, Gao Y, Ma H, Cao Y ., Development. November 1, 2012; 139 (21): 3950-61.
Signaling crosstalk between TGFβ and Dishevelled/ Par1b. , Mamidi A, Inui M, Manfrin A, Soligo S, Enzo E, Aragona M, Cordenonsi M, Wessely O , Dupont S, Piccolo S ., Cell Death Differ. October 1, 2012; 19 (10): 1689-97.
Comparative gene expression analysis and fate mapping studies suggest an early segregation of cardiogenic lineages in Xenopus laevis. , Gessert S, Kühl M ., Dev Biol. October 15, 2009; 334 (2): 395-408.
Oct25 represses transcription of nodal/activin target genes by interaction with signal transducers during Xenopus gastrulation. , Cao Y , Siegel D , Oswald F, Knöchel W ., J Biol Chem. December 5, 2008; 283 (49): 34168-77.
Ectodermal factor restricts mesoderm differentiation by inhibiting p53. , Sasai N, Yakura R, Kamiya D, Nakazawa Y, Sasai Y ., Cell. May 30, 2008; 133 (5): 878-90.
Negative regulation of Activin/ Nodal signaling by SRF during Xenopus gastrulation. , Yun CH, Choi SC, Park E, Kim SJ, Chung AS, Lee HK , Lee HK , Lee HJ , Lee HJ , Han JK ., Development. February 1, 2007; 134 (4): 769-77.
FoxD3 regulation of Nodal in the Spemann organizer is essential for Xenopus dorsal mesoderm development. , Steiner AB, Engleka MJ, Lu Q, Piwarzyk EC, Yaklichkin S , Lefebvre JL, Walters JW, Pineda-Salgado L, Labosky PA, Kessler DS ., Development. December 1, 2006; 133 (24): 4827-38.
The Vg1-related protein Gdf3 acts in a Nodal signaling pathway in the pre-gastrulation mouse embryo. , Chen C , Ware SM , Sato A, Houston-Hawkins DE, Habas R , Matzuk MM, Shen MM, Brown CW., Development. January 1, 2006; 133 (2): 319-29.
XCR2, one of three Xenopus EGF- CFC genes, has a distinct role in the regulation of left- right patterning. , Onuma Y , Yeo CY, Whitman M ., Development. January 1, 2006; 133 (2): 237-50.
Selective inhibition of TGF-beta responsive genes by Smad-interacting peptide aptamers from FoxH1, Lef1 and CBP. , Cui Q, Lim SK, Zhao B, Hoffmann FM., Oncogene. June 2, 2005; 24 (24): 3864-74.
Identification of novel genes affecting mesoderm formation and morphogenesis through an enhanced large scale functional screen in Xenopus. , Chen JA , Voigt J, Gilchrist M , Papalopulu N , Amaya E ., Mech Dev. March 1, 2005; 122 (3): 307-31.
Of Fox and Frogs: Fox (fork head/winged helix) transcription factors in Xenopus development. , Pohl BS, Knöchel W ., Gene. January 3, 2005; 344 21-32.
New roles for FoxH1 in patterning the early embryo. , Kofron M , Puck H, Standley H , Wylie C , Old R , Whitman M , Heasman J ., Development. October 1, 2004; 131 (20): 5065-78.
Regulation of the Lim-1 gene is mediated through conserved FAST-1/ FoxH1 sites in the first intron. , Watanabe M, Rebbert ML, Andreazzoli M , Takahashi N, Toyama R, Zimmerman S, Whitman M , Dawid IB ., Dev Dyn. December 1, 2002; 225 (4): 448-56.
Molecular regulation of vertebrate early endoderm development. , Shivdasani RA ., Dev Biol. September 15, 2002; 249 (2): 191-203.
A novel Xenopus Smad-interacting forkhead transcription factor ( XFast-3) cooperates with XFast-1 in regulating gastrulation movements. , Howell M, Inman GJ, Hill CS ., Development. June 1, 2002; 129 (12): 2823-34.
The role of a Williams-Beuren syndrome-associated helix-loop-helix domain-containing transcription factor in activin/ nodal signaling. , Ring C, Ogata S, Meek L, Song J, Ohta T, Miyazono K, Cho KW ., Genes Dev. April 1, 2002; 16 (7): 820-35.
Expression cloning of Xenopus Os4, an evolutionarily conserved gene, which induces mesoderm and dorsal axis. , Zohn IE, Brivanlou AH ., Dev Biol. November 1, 2001; 239 (1): 118-31.
TGF-beta signalling pathways in early Xenopus development. , Hill CS ., Curr Opin Genet Dev. October 1, 2001; 11 (5): 533-40.
The transcriptional role of Smads and FAST ( FoxH1) in TGFbeta and activin signalling. , Attisano L, Silvestri C, Izzi L, Labbé E., Mol Cell Endocrinol. June 30, 2001; 180 (1-2): 3-11.
Mesendoderm induction and reversal of left- right pattern by mouse Gdf1, a Vg1-related gene. , Wall NA, Craig EJ, Labosky PA, Kessler DS ., Dev Biol. November 15, 2000; 227 (2): 495-509.
Fast1 is required for the development of dorsal axial structures in zebrafish. , Sirotkin HI, Gates MA, Kelly PD, Schier AF, Talbot WS., Curr Biol. September 7, 2000; 10 (17): 1051-4.
FAST-1 is a key maternal effector of mesoderm inducers in the early Xenopus embryo. , Watanabe M, Whitman M ., Development. December 1, 1999; 126 (24): 5621-34.
Characterization of zebrafish smad1, smad2 and smad5: the amino-terminus of smad1 and smad5 is required for specific function in the embryo. , Müller F , Blader P, Rastegar S, Fischer N, Knöchel W , Strähle U., Mech Dev. October 1, 1999; 88 (1): 73-88.
The role of FAST-1 and Smads in transcriptional regulation by activin during early Xenopus embryogenesis. , Yeo CY, Chen X, Whitman M ., J Biol Chem. September 10, 1999; 274 (37): 26584-90.
Dominant-negative Smad2 mutants inhibit activin/ Vg1 signaling and disrupt axis formation in Xenopus. , Hoodless PA, Tsukazaki T, Nishimatsu S, Attisano L, Wrana JL, Thomsen GH ., Dev Biol. March 15, 1999; 207 (2): 364-79.
A molecular basis for Smad specificity. , Lagna G, Hemmati-Brivanlou A ., Dev Dyn. March 1, 1999; 214 (3): 269-77.
Alternatively spliced variant of Smad2 lacking exon 3. Comparison with wild-type Smad2 and Smad3. , Yagi K, Goto D, Hamamoto T, Takenoshita S, Kato M, Miyazono K., J Biol Chem. January 8, 1999; 274 (2): 703-9.
A mouse homologue of FAST-1 transduces TGF beta superfamily signals and is expressed during early embryogenesis. , Weisberg E, Winnier GE, Chen X, Farnsworth CL, Hogan BL , Whitman M ., Mech Dev. December 1, 1998; 79 (1-2): 17-27.
Determinants of specificity in TGF-beta signal transduction. , Chen YG , Hata A, Lo RS, Wotton D, Shi Y , Pavletich N, Massagué J., Genes Dev. July 15, 1998; 12 (14): 2144-52.
Characterization of human FAST-1, a TGF beta and activin signal transducer. , Zhou S, Zawel L, Lengauer C, Kinzler KW, Vogelstein B., Mol Cell. July 1, 1998; 2 (1): 121-7.