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Retinoic acid control of pax8 during renal specification of Xenopus pronephros involves hox and meis3. , Durant-Vesga J, Suzuki N, Ochi H , Le Bouffant R , Eschstruth A, Ogino H , Umbhauer M , Riou JF ., Dev Biol. January 1, 2023; 493 17-28.
Alcohol induces neural tube defects by reducing retinoic acid signaling and promoting neural plate expansion. , Edri T, Cohen D, Shabtai Y, Fainsod A ., Front Cell Dev Biol. January 1, 2023; 11 1282273.
Bmp4 Synexpression Gene, Sizzled, Transcription Is Collectively Modulated by Smad1 and Ventx1.1/Ventx2.1 in Early Xenopus Embryos. , Rehman ZU , Tayyaba F, Lee U, Kim J ., Int J Mol Sci. November 1, 2022; 23 (21):
Goosecoid Controls Neuroectoderm Specification via Dual Circuits of Direct Repression and Indirect Stimulation in Xenopus Embryos. , Umair Z, Kumar V , Goutam RS, Kumar S , Kumar S , Lee U, Kim J ., Mol Cells. October 31, 2021; 44 (10): 723-735.
Foxd4l1.1 Negatively Regulates Chordin Transcription in Neuroectoderm of Xenopus Gastrula. , Kumar V , Goutam RS, Umair Z, Park S, Lee U, Kim J ., Cells. October 17, 2021; 10 (10):
A systemic cell cycle block impacts stage-specific histone modification profiles during Xenopus embryogenesis. , Pokrovsky D, Forné I, Straub T, Imhof A, Rupp RAW ., PLoS Biol. September 1, 2021; 19 (9): e3001377.
Smad2 and Smad3 differentially modulate chordin transcription via direct binding on the distal elements in gastrula Xenopus embryos. , Kumar V , Umair Z, Kumar S , Kumar S , Lee U, Kim J ., Biochem Biophys Res Commun. June 25, 2021; 559 168-175.
Combinatorial transcription factor activities on open chromatin induce embryonic heterogeneity in vertebrates. , Bright AR, van Genesen S, Li Q , Grasso A, Frölich S, van der Sande M, van Heeringen SJ, Veenstra GJC ., EMBO J. May 3, 2021; 40 (9): e104913.
Dusp1 modulates activin/smad2 mediated germ layer specification via FGF signal inhibition in Xenopus embryos. , Umair Z, Kumar S , Rafiq K , Kumar V , Reman ZU, Lee SH, Kim S, Lee JY , Lee U, Kim J ., Anim Cells Syst (Seoul). November 27, 2020; 24 (6): 359-370.
Foxd4l1.1 negatively regulates transcription of neural repressor ventx1.1 during neuroectoderm formation in Xenopus embryos. , Kumar S , Kumar S , Umair Z, Kumar V , Kumar S , Lee U, Kim J ., Sci Rep. October 8, 2020; 10 (1): 16780.
Natural size variation among embryos leads to the corresponding scaling in gene expression. , Leibovich A, Edri T, Klein SL, Moody SA , Fainsod A ., Dev Biol. June 15, 2020; 462 (2): 165-179.
miR-199 plays both positive and negative regulatory roles in Xenopus eye development. , Ritter RA, Ulrich CH , Brzezinska BN, Shah VV , Zamora MJ, Kelly LE, El-Hodiri HM , Sater AK ., Genesis. March 1, 2020; 58 (3-4): e23354.
Pinhead signaling regulates mesoderm heterogeneity via FGF receptor-dependent pathway. , Ossipova O, Itoh K, Radu A, Ezan J, Sokol SY ., Development. January 1, 2020;
Skeletal muscle differentiation drives a dramatic downregulation of RNA polymerase III activity and differential expression of Polr3g isoforms. , McQueen C, Hughes GL, Pownall ME ., Dev Biol. October 1, 2019; 454 (1): 74-84.
Ventx1.1 as a Direct Repressor of Early Neural Gene zic3 in Xenopus laevis. , Umair Z, Kumar S , Kim DH, Rafiq K , Kumar V , Kim S, Park JB , Lee JY , Lee U, Kim J ., Mol Cells. December 31, 2018; 41 (12): 1061-1071.
Xbra and Smad-1 cooperate to activate the transcription of neural repressor ventx1.1 in Xenopus embryos. , Kumar S , Kumar S , Umair Z, Yoon J, Lee U, Kim SC, Park JB , Lee JY , Kim J ., Sci Rep. July 30, 2018; 8 (1): 11391.
Wbp2nl has a developmental role in establishing neural and non-neural ectodermal fates. , Marchak A, Grant PA , Neilson KM , Datta Majumdar H, Yaklichkin S , Johnson D, Moody SA ., Dev Biol. September 1, 2017; 429 (1): 213-224.
Nodal/Activin Pathway is a Conserved Neural Induction Signal in Chordates. , Le Petillon Y, Luxardi G , Scerbo P , Cibois M, Leon A, Subirana L, Irimia M, Kodjabachian L , Escriva H, Bertrand S., Nat Ecol Evol. August 1, 2017; 1 (8): 1192-1200.
Lineage commitment of embryonic cells involves MEK1-dependent clearance of pluripotency regulator Ventx2. , Scerbo P , Marchal L, Kodjabachian L ., Elife. June 27, 2017; 6
Foxd4 is essential for establishing neural cell fate and for neuronal differentiation. , Sherman JH, Karpinski BA, Fralish MS, Cappuzzo JM, Dhindsa DS, Thal AG, Moody SA , LaMantia AS, Maynard TM., Genesis. June 1, 2017; 55 (6):
Brg1 chromatin remodeling ATPase balances germ layer patterning by amplifying the transcriptional burst at midblastula transition. , Wagner G, Singhal N, Nicetto D, Straub T, Kremmer E, Rupp RAW ., PLoS Genet. May 12, 2017; 13 (5): e1006757.
Pa2G4 is a novel Six1 co-factor that is required for neural crest and otic development. , Neilson KM , Abbruzzesse G , Kenyon K , Bartolo V, Krohn P, Alfandari D , Alfandari D , Moody SA ., Dev Biol. January 15, 2017; 421 (2): 171-182.
Neural transcription factors bias cleavage stage blastomeres to give rise to neural ectoderm. , Gaur S, Mandelbaum M, Herold M, Majumdar HD, Neilson KM , Maynard TM, Mood K, Daar IO , Moody SA ., Genesis. June 1, 2016; 54 (6): 334-49.
Early neural ectodermal genes are activated by Siamois and Twin during blastula stages. , Klein SL, Moody SA ., Genesis. May 1, 2015; 53 (5): 308-20.
Neural transcription factors: from embryos to neural stem cells. , Lee HK , Lee HS , Moody SA ., Mol Cells. October 31, 2014; 37 (10): 705-12.
Occupancy of tissue-specific cis-regulatory modules by Otx2 and TLE/Groucho for embryonic head specification. , Yasuoka Y , Suzuki Y, Takahashi S , Someya H, Sudou N , Haramoto Y , Cho KW , Asashima M , Sugano S, Taira M ., Nat Commun. July 9, 2014; 5 4322.
PV.1 suppresses the expression of FoxD5b during neural induction in Xenopus embryos. , Yoon J, Kim JH , Kim SC, Park JB , Lee JY , Kim J ., Mol Cells. March 1, 2014; 37 (3): 220-5.
ERF and ETV3L are retinoic acid-inducible repressors required for primary neurogenesis. , Janesick A , Abbey R, Chung C, Liu S , Taketani M, Blumberg B ., Development. August 1, 2013; 140 (15): 3095-106.
On becoming neural: what the embryo can tell us about differentiating neural stem cells. , Moody SA , Klein SL, Karpinski BA, Maynard TM, Lamantia AS., Am J Stem Cells. June 30, 2013; 2 (2): 74-94.
WNK4 is an essential effector of anterior formation in FGF signaling. , Shimizu M, Goto T , Sato A, Shibuya H ., Genes Cells. June 1, 2013; 18 (6): 442-9.
Conserved structural domains in FoxD4L1, a neural forkhead box transcription factor, are required to repress or activate target genes. , Klein SL, Neilson KM , Orban J, Yaklichkin S , Hoffbauer J, Mood K, Daar IO , Moody SA ., PLoS One. April 4, 2013; 8 (4): e61845.
Suv4-20h histone methyltransferases promote neuroectodermal differentiation by silencing the pluripotency-associated Oct-25 gene. , Nicetto D, Hahn M, Jung J, Schneider TD, Straub T, David R , Schotta G, Rupp RA ., PLoS Genet. January 1, 2013; 9 (1): e1003188.
AP-1( c- Jun/ FosB) mediates xFoxD5b expression in Xenopus early developmental neurogenesis. , Yoon J, Kim JH , Lee OJ, Lee SY, Lee SH, Park JB , Lee JY , Kim SC, Kim J ., Int J Dev Biol. January 1, 2013; 57 (11-12): 865-72.
Specific domains of FoxD4/5 activate and repress neural transcription factor genes to control the progression of immature neural ectoderm to differentiating neural plate. , Neilson KM , Klein SL, Mhaske P, Mood K, Daar IO , Moody SA ., Dev Biol. May 15, 2012; 365 (2): 363-75.
A revised model of Xenopus dorsal midline development: differential and separable requirements for Notch and Shh signaling. , Peyrot SM, Wallingford JB , Harland RM ., Dev Biol. April 15, 2011; 352 (2): 254-66.
The response of early neural genes to FGF signaling or inhibition of BMP indicate the absence of a conserved neural induction module. , Rogers CD, Ferzli GS, Casey ES ., BMC Dev Biol. January 26, 2011; 11 74.
Microarray identification of novel downstream targets of FoxD4L1/D5, a critical component of the neural ectodermal transcriptional network. , Yan B , Neilson KM , Moody SA ., Dev Dyn. December 1, 2010; 239 (12): 3467-80.
BMP inhibition initiates neural induction via FGF signaling and Zic genes. , Marchal L, Luxardi G , Thomé V, Kodjabachian L ., Proc Natl Acad Sci U S A. October 13, 2009; 106 (41): 17437-42.
Notch signaling downstream of foxD5 promotes neural ectodermal transcription factors that inhibit neural differentiation. , Yan B , Neilson KM , Moody SA ., Dev Dyn. June 1, 2009; 238 (6): 1358-65.
foxD5 plays a critical upstream role in regulating neural ectodermal fate and the onset of neural differentiation. , Yan B , Neilson KM , Moody SA ., Dev Biol. May 1, 2009; 329 (1): 80-95.
Characterisation of the fibroblast growth factor dependent transcriptome in early development. , Branney PA, Faas L, Steane SE, Pownall ME , Isaacs HV ., PLoS One. January 1, 2009; 4 (3): e4951.
The competence of Xenopus blastomeres to produce neural and retinal progeny is repressed by two endo- mesoderm promoting pathways. , Yan B , Moody SA ., Dev Biol. May 1, 2007; 305 (1): 103-19.
Genomic analysis of Xenopus organizer function. , Hufton AL, Vinayagam A, Suhai S, Baker JC ., BMC Dev Biol. June 6, 2006; 6 27.
Identification of novel genes affecting mesoderm formation and morphogenesis through an enhanced large scale functional screen in Xenopus. , Chen JA , Voigt J, Gilchrist M , Papalopulu N , Amaya E ., Mech Dev. March 1, 2005; 122 (3): 307-31.
Of Fox and Frogs: Fox (fork head/winged helix) transcription factors in Xenopus development. , Pohl BS, Knöchel W ., Gene. January 3, 2005; 344 21-32.
A downstream enhancer is essential for Xenopus FoxD5 transcription. , Schön C, Köster M , Knöchel W ., Biochem Biophys Res Commun. December 24, 2004; 325 (4): 1360-6.
foxD5a, a Xenopus winged helix gene, maintains an immature neural ectoderm via transcriptional repression that is dependent on the C-terminal domain. , Sullivan SA, Akers L, Moody SA ., Dev Biol. April 15, 2001; 232 (2): 439-57.
Neuroectodermal specification and regionalization of the Spemann organizer in Xenopus. , Fetka I, Doederlein G, Bouwmeester T., Mech Dev. May 1, 2000; 93 (1-2): 49-58.
Characterization of a subfamily of related winged helix genes, XFD-12/12'/12" (XFLIP), during Xenopus embryogenesis. , Sölter M, Köster M , Hollemann T , Brey A, Pieler T , Knöchel W ., Mech Dev. December 1, 1999; 89 (1-2): 161-5.