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Mechanical Tensions Regulate Gene Expression in the Xenopus laevis Axial Tissues. , Eroshkin FM, Fefelova EA, Bredov DV, Orlov EE, Kolyupanova NM, Mazur AM, Sokolov AS, Zhigalova NA, Prokhortchouk EB, Nesterenko AM, Zaraisky AG ., Int J Mol Sci. January 10, 2024; 25 (2):
SMOC-1 interacts with both BMP and glypican to regulate BMP signaling in C. elegans. , DeGroot MS, Williams B, Chang TY, Maas Gamboa ML, Larus IM, Hong G, Fromme JC, Liu J ., PLoS Biol. August 1, 2023; 21 (8): e3002272.
HMCES modulates the transcriptional regulation of nodal/activin and BMP signaling in mESCs. , Liang T, Bai J, Zhou W, Lin H, Ma S, Zhu X, Tao Q , Xi Q., Cell Rep. July 12, 2022; 40 (2): 111038.
Evo-Devo of Urbilateria and its larval forms. , De Robertis EM , Tejeda-Muñoz N., Dev Biol. July 1, 2022; 487 10-20.
ccr7 affects both morphogenesis and differentiation during early Xenopus embryogenesis. , Goto T , Michiue T , Shibuya H ., Dev Growth Differ. June 1, 2022; 64 (5): 254-260.
Temporal transcriptomic profiling reveals dynamic changes in gene expression of Xenopus animal cap upon activin treatment. , Satou-Kobayashi Y, Kim JD , Fukamizu A, Asashima M ., Sci Rep. July 15, 2021; 11 (1): 14537.
Combinatorial transcription factor activities on open chromatin induce embryonic heterogeneity in vertebrates. , Bright AR, van Genesen S, Li Q , Grasso A, Frölich S, van der Sande M, van Heeringen SJ, Veenstra GJC ., EMBO J. May 3, 2021; 40 (9): e104913.
A temporally resolved transcriptome for developing "Keller" explants of the Xenopus laevis dorsal marginal zone. , Kakebeen AD, Huebner RJ, Shindo A, Kwon K, Kwon T , Wills AE , Wallingford JB ., Dev Dyn. May 1, 2021; 250 (5): 717-731.
A frog with three sex chromosomes that co-mingle together in nature: Xenopus tropicalis has a degenerate W and a Y that evolved from a Z chromosome. , Furman BLS, Cauret CMS, Knytl M, Song XY, Premachandra T, Ofori-Boateng C, Jordan DC, Horb ME , Evans BJ ., PLoS Genet. November 1, 2020; 16 (11): e1009121.
Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endoderm gene regulatory network. , Mukherjee S , Chaturvedi P , Rankin SA , Rankin SA , Fish MB, Wlizla M , Paraiso KD , MacDonald M, Chen X, Weirauch MT, Blitz IL , Cho KW , Zorn AM ., Elife. September 7, 2020; 9
Natural size variation among embryos leads to the corresponding scaling in gene expression. , Leibovich A, Edri T, Klein SL, Moody SA , Fainsod A ., Dev Biol. June 15, 2020; 462 (2): 165-179.
Retinoic acid-induced expression of Hnf1b and Fzd4 is required for pancreas development in Xenopus laevis. , Gere-Becker MB, Pommerenke C, Lingner T, Pieler T ., Development. June 8, 2018; 145 (12):
Pitx1 regulates cement gland development in Xenopus laevis through activation of transcriptional targets and inhibition of BMP signaling. , Jin Y, Weinstein DC ., Dev Biol. May 1, 2018; 437 (1): 41-49.
Genomic epidemiology of the emerging pathogen Batrachochytrium dendrobatidis from native and invasive amphibian species in Chile. , Valenzuela-Sánchez A, O'Hanlon SJ, Alvarado-Rybak M, Uribe-Rivera DE, Cunningham AA, Fisher MC , Soto-Azat C., Transbound Emerg Dis. April 1, 2018; 65 (2): 309-314.
ADMP controls the size of Spemann's organizer through a network of self-regulating expansion-restriction signals. , Leibovich A, Kot-Leibovich H, Ben-Zvi D, Fainsod A ., BMC Biol. January 22, 2018; 16 (1): 13.
Transcriptome analysis identifies genes involved in sex determination and development of Xenopus laevis gonads. , Piprek RP, Damulewicz M, Kloc M , Kubiak JZ ., Differentiation. January 1, 2018; 100 46-56.
Antidepressant, anticonvulsant and antinociceptive effects of 3'-methoxy-6-methylflavone and 3'-hydroxy-6-methylflavone may involve GABAergic mechanisms. , Karim N, Khan I, Ahmad N, Umar MN, Gavande N., Pharmacol Rep. October 1, 2017; 69 (5): 1014-1020.
Genome-wide analysis of dorsal and ventral transcriptomes of the Xenopus laevis gastrula. , Ding Y , Colozza G , Zhang K, Moriyama Y , Ploper D, Sosa EA, Benitez MDJ, De Robertis EM ., Dev Biol. June 15, 2017; 426 (2): 176-187.
Identification of new regulators of embryonic patterning and morphogenesis in Xenopus gastrulae by RNA sequencing. , Popov IK, Kwon T , Crossman DK, Crowley MR, Wallingford JB , Chang C ., Dev Biol. June 15, 2017; 426 (2): 429-441.
Noggin is required for first pharyngeal arch differentiation in the frog Xenopus tropicalis. , Young JJ , Kjolby RAS, Wu G, Wong D, Hsu SW, Harland RM ., Dev Biol. June 15, 2017; 426 (2): 245-254.
Brg1 chromatin remodeling ATPase balances germ layer patterning by amplifying the transcriptional burst at midblastula transition. , Wagner G, Singhal N, Nicetto D, Straub T, Kremmer E, Rupp RAW ., PLoS Genet. May 12, 2017; 13 (5): e1006757.
SMOC can act as both an antagonist and an expander of BMP signaling. , Thomas JT, Eric Dollins D, Andrykovich KR, Chu T, Stultz BG, Hursh DA, Moos M ., Elife. March 21, 2017; 6
The splicing factor SRSF1 modulates pattern formation by inhibiting transcription of tissue specific genes during embryogenesis. , Lee SH, Lee HK , Lee HK , Kim C, Kim YK, Ismail T, Jeong Y, Park K, Park JW , Kwon OS, Kang BS, Lee DS, Park MJ, Park DS, Lee HS , Lee HS ., Biochem Biophys Res Commun. September 2, 2016; 477 (4): 1011-1016.
Structure of Gremlin-2 in Complex with GDF5 Gives Insight into DAN-Family-Mediated BMP Antagonism. , Nolan K, Kattamuri C, Rankin SA , Rankin SA , Read RJ, Zorn AM , Thompson TB., Cell Rep. August 23, 2016; 16 (8): 2077-2086.
Tissue- and stage-specific Wnt target gene expression is controlled subsequent to β-catenin recruitment to cis-regulatory modules. , Nakamura Y, de Paiva Alves E, Veenstra GJ , Hoppler S ., Development. June 1, 2016; 143 (11): 1914-25.
Specification of anteroposterior axis by combinatorial signaling during Xenopus development. , Carron C, Shi DL ., Wiley Interdiscip Rev Dev Biol. January 1, 2016; 5 (2): 150-68.
Unequal contribution of native South African phylogeographic lineages to the invasion of the African clawed frog, Xenopus laevis, in Europe. , De Busschere C , Courant J, Herrel A, Rebelo R, Rödder D, Measey GJ, Backeljau T., PeerJ. January 1, 2016; 4 e1659.
Structure and functional properties of Norrin mimic Wnt for signalling with Frizzled4, Lrp5/6, and proteoglycan. , Chang TH, Hsieh FL, Zebisch M, Harlos K, Elegheert J, Jones EY., Elife. July 9, 2015; 4
Temporally coordinated signals progressively pattern the anteroposterior and dorsoventral body axes. , Tuazon FB, Mullins MC., Semin Cell Dev Biol. June 1, 2015; 42 118-33.
Efficient retina formation requires suppression of both Activin and BMP signaling pathways in pluripotent cells. , Wong KA, Trembley M, Abd Wahab S, Viczian AS ., Biol Open. March 6, 2015; 4 (4): 573-83.
Pax3 and Zic1 trigger the early neural crest gene regulatory network by the direct activation of multiple key neural crest specifiers. , Plouhinec JL, Roche DD, Pegoraro C, Figueiredo AL, Maczkowiak F, Brunet LJ, Milet C, Vert JP, Pollet N , Harland RM , Monsoro-Burq AH ., Dev Biol. February 15, 2014; 386 (2): 461-72.
Conservation and evolutionary divergence in the activity of receptor-regulated smads. , Sorrentino GM , Gillis WQ, Oomen-Hajagos J, Thomsen GH ., Evodevo. October 1, 2012; 3 (1): 22.
Lhx1 is required for specification of the renal progenitor cell field. , Cirio MC , Hui Z, Haldin CE , Cosentino CC, Stuckenholz C, Chen X, Hong SK, Dawid IB , Hukriede NA., PLoS One. April 15, 2011; 6 (4): e18858.
Translocation of the cytoplasmic domain of ADAM13 to the nucleus is essential for Calpain8-a expression and cranial neural crest cell migration. , Cousin H , Abbruzzese G , Kerdavid E, Gaultier A , Alfandari D , Alfandari D ., Dev Cell. February 15, 2011; 20 (2): 256-63.
Neuronatin promotes neural lineage in ESCs via Ca(2+) signaling. , Lin HH, Bell E , Uwanogho D, Perfect LW, Noristani H, Bates TJ, Snetkov V, Price J, Sun YM., Stem Cells. November 1, 2010; 28 (11): 1950-60.
Effects of S-adenosylmethionine decarboxylase, polyamines, amino acids, and weak bases (amines and ammonia) on development and ribosomal RNA synthesis in Xenopus embryos. , Shiokawa K, Aso M, Kondo T, Takai J, Yoshida J, Mishina T, Fuchimukai K, Ogasawara T, Kariya T, Tashiro K, Igarashi K., Amino Acids. February 1, 2010; 38 (2): 439-49.
BMP antagonists and FGF signaling contribute to different domains of the neural plate in Xenopus. , Wills AE , Choi VM, Bennett MJ, Khokha MK , Harland RM ., Dev Biol. January 15, 2010; 337 (2): 335-50.
Enzymatic regulation of pattern: BMP4 binds CUB domains of Tolloids and inhibits proteinase activity. , Lee HX , Mendes FA, Plouhinec JL, De Robertis EM ., Genes Dev. November 1, 2009; 23 (21): 2551-62.
Short- and long-range functions of Goosecoid in zebrafish axis formation are independent of Chordin, Noggin 1 and Follistatin-like 1b. , Dixon Fox M, Bruce AE., Development. May 1, 2009; 136 (10): 1675-85.
Molecular cloning and characterization of follistatin in the gilthead sea bream, Sparus aurata. , Funkenstein B, Rebhan Y, Skopal T., Mol Biol Rep. March 1, 2009; 36 (3): 501-11.
Differential regulation of gonadotropins ( FSH and LH) and growth hormone (GH) by neuroendocrine, endocrine, and paracrine factors in the zebrafish--an in vitro approach. , Lin SW, Ge W., Gen Comp Endocrinol. January 15, 2009; 160 (2): 183-93.
BMP gradients steer nerve growth cones by a balancing act of LIM kinase and Slingshot phosphatase on ADF/cofilin. , Wen Z, Han L , Bamburg JR, Shim S , Ming GL, Zheng JQ., J Cell Biol. July 2, 2007; 178 (1): 107-19.
Xenopus cDNA microarray identification of genes with endodermal organ expression. , Park EC , Hayata T, Cho KW , Han JK ., Dev Dyn. June 1, 2007; 236 (6): 1633-49.
Noggin1 and Follistatin-like2 function redundantly to Chordin to antagonize BMP activity. , Dal-Pra S, Fürthauer M, Van-Celst J, Thisse B, Thisse C., Dev Biol. October 15, 2006; 298 (2): 514-26.
FGF is essential for both condensation and mesenchymal-epithelial transition stages of pronephric kidney tubule development. , Urban AE , Zhou X , Zhou X , Ungos JM, Raible DW, Altmann CR , Vize PD ., Dev Biol. September 1, 2006; 297 (1): 103-17.
Molecular evidence for deep evolutionary roots of bilaterality in animal development. , Matus DQ, Pang K, Marlow H, Dunn CW, Thomsen GH , Martindale MQ., Proc Natl Acad Sci U S A. July 25, 2006; 103 (30): 11195-200.
Structural basis for the inhibition of activin signalling by follistatin. , Harrington AE, Morris-Triggs SA, Ruotolo BT, Robinson CV, Ohnuma S , Hyvönen M., EMBO J. March 8, 2006; 25 (5): 1035-45.
Twisted gastrulation is required for forebrain specification and cooperates with Chordin to inhibit BMP signaling during X. tropicalis gastrulation. , Wills A , Harland RM , Khokha MK ., Dev Biol. January 1, 2006; 289 (1): 166-78.
Xenopus hairy2b specifies anterior prechordal mesoderm identity within Spemann's organizer. , Yamaguti M, Cho KW , Hashimoto C., Dev Dyn. September 1, 2005; 234 (1): 102-13.
BMP-3 is a novel inhibitor of both activin and BMP-4 signaling in Xenopus embryos. , Gamer LW, Nove J, Levin M , Rosen V., Dev Biol. September 1, 2005; 285 (1): 156-68.