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Role of replication protein A as sensor in activation of the S-phase checkpoint in Xenopus egg extracts. , Recolin B, Van der Laan S, Maiorano D ., Nucleic Acids Res. April 1, 2012; 40 (8): 3431-42.
The conserved C terminus of Claspin interacts with Rad9 and promotes rapid activation of Chk1. , Liu S , Song N, Zou L., Cell Cycle. July 15, 2012; 11 (14): 2711-6.
Drosophila Claspin is required for the G2 arrest that is induced by DNA replication stress but not by DNA double-strand breaks. , Lee EM , Trinh TT, Shim HJ, Park SY, Nguyen TT, Kim MJ , Song YH., DNA Repair (Amst). September 1, 2012; 11 (9): 741-52.
DNA2 and EXO1 in replication-coupled, homology-directed repair and in the interplay between HDR and the FA/BRCA network. , Karanja KK, Cox SW, Duxin JP , Stewart SA, Campbell JL ., Cell Cycle. November 1, 2012; 11 (21): 3983-96.
Study of the DNA damage checkpoint using Xenopus egg extracts. , Willis J, DeStephanis D, Patel Y, Gowda V, Yan S ., J Vis Exp. November 5, 2012; (69): e4449.
WD40-repeat protein WDR18 collaborates with TopBP1 to facilitate DNA damage checkpoint signaling. , Yan S , Willis J., Biochem Biophys Res Commun. February 15, 2013; 431 (3): 466-71.
A role for the MRN complex in ATR activation via TOPBP1 recruitment. , Duursma AM, Driscoll R, Elias JE, Cimprich KA., Mol Cell. April 11, 2013; 50 (1): 116-22.
The Mre11- Rad50- Nbs1 (MRN) complex has a specific role in the activation of Chk1 in response to stalled replication forks. , Lee J , Dunphy WG ., Mol Biol Cell. May 1, 2013; 24 (9): 1343-53.
APE2 is required for ATR- Chk1 checkpoint activation in response to oxidative stress. , Willis J, Patel Y, Lentz BL, Yan S ., Proc Natl Acad Sci U S A. June 25, 2013; 110 (26): 10592-7.
DNA polymerase κ-dependent DNA synthesis at stalled replication forks is important for CHK1 activation. , Bétous R, Pillaire MJ, Pierini L, van der Laan S, Recolin B, Ohl-Séguy E, Guo C, Niimi N, Grúz P, Nohmi T, Friedberg E, Cazaux C, Maiorano D , Hoffmann JS., EMBO J. July 31, 2013; 32 (15): 2172-85.
Titration of four replication factors is essential for the Xenopus laevis midblastula transition. , Collart C , Allen GE, Bradshaw CR , Smith JC , Zegerman P., Science. August 23, 2013; 341 (6148): 893-6.
PrimPol bypasses UV photoproducts during eukaryotic chromosomal DNA replication. , Bianchi J, Rudd SG, Jozwiakowski SK, Bailey LJ, Soura V, Taylor E, Stevanovic I, Green AJ, Stracker TH, Lindsay HD , Doherty AJ., Mol Cell. November 21, 2013; 52 (4): 566-73.
Importin β-dependent nuclear import of TopBP1 in ATR- Chk1 checkpoint in Xenopus egg extracts. , Bai L, Michael WM, Yan S ., Cell Signal. May 1, 2014; 26 (5): 857-67.
Interaction of Chk1 with Treslin negatively regulates the initiation of chromosomal DNA replication. , Guo C, Kumagai A , Schlacher K, Shevchenko A, Shevchenko A, Dunphy WG ., Mol Cell. February 5, 2015; 57 (3): 492-505.
REV1 is important for the ATR- Chk1 DNA damage response pathway in Xenopus egg extracts. , DeStephanis D, McLeod M, Yan S ., Biochem Biophys Res Commun. May 8, 2015; 460 (3): 609-15.
Tight Chk1 Levels Control Replication Cluster Activation in Xenopus. , Platel M, Goldar A, Wiggins JM, Barbosa P, Libeau P, Priam P, Narassimprakash H, Grodzenski X, Marheineke K ., PLoS One. June 5, 2015; 10 (6): e0129090.
RAD18 Is a Maternal Limiting Factor Silencing the UV-Dependent DNA Damage Checkpoint in Xenopus Embryos. , Kermi C, Prieto S, van der Laan S, Tsanov N, Recolin B, Uro-Coste E, Delisle MB, Maiorano D ., Dev Cell. August 10, 2015; 34 (3): 364-72.
Prediction of Functionally Important Phospho-Regulatory Events in Xenopus laevis Oocytes. , Johnson JR, Santos SD, Johnson T, Pieper U, Strumillo M, Wagih O, Sali A, Krogan NJ , Beltrao P., PLoS Comput Biol. August 27, 2015; 11 (8): e1004362.
Xenopus egg extract to study regulation of genome-wide and locus-specific DNA replication. , Raspelli E, Falbo L, Costanzo V., Genesis. January 1, 2017; 55 (1-2):
APE2 Zf-GRF facilitates 3'-5' resection of DNA damage following oxidative stress. , Wallace BD, Berman Z, Mueller GA, Lin Y, Chang T, Andres SN, Wojtaszek JL, DeRose EF, Appel CD, London RE, Yan S , Williams RS., Proc Natl Acad Sci U S A. January 10, 2017; 114 (2): 304-309.
High-throughput analysis reveals novel maternal germline RNAs crucial for primordial germ cell preservation and proper migration. , Owens DA , Butler AM, Aguero TH , Newman KM, Van Booven D, King ML ., Development. January 15, 2017; 144 (2): 292-304.
Regulation of DNA Replication in Early Embryonic Cleavages. , Kermi C, Lo Furno E, Maiorano D ., Genes (Basel). January 19, 2017; 8 (1):
Reversal of DDK-Mediated MCM Phosphorylation by Rif1- PP1 Regulates Replication Initiation and Replisome Stability Independently of ATR/ Chk1. , Alver RC, Chadha GS, Gillespie PJ, Blow JJ ., Cell Rep. March 7, 2017; 18 (10): 2508-2520.
An ATR-dependent function for the Ddx19 RNA helicase in nuclear R-loop metabolism. , Hodroj D, Recolin B, Serhal K, Martinez S, Tsanov N, Abou Merhi R, Maiorano D ., EMBO J. May 2, 2017; 36 (9): 1182-1198.
Cip29 is phosphorylated following activation of the DNA damage response in Xenopus egg extracts. , Holden J, Taylor EM, Lindsay HD ., PLoS One. July 10, 2017; 12 (7): e0181131.
Protein phosphatase 1 and phosphatase 1 nuclear targeting subunit-dependent regulation of DNA-dependent protein kinase and non-homologous end joining. , Zhu S, Fisher LA, Bessho T, Peng A ., Nucleic Acids Res. October 13, 2017; 45 (18): 10583-10594.
Protein interactomes of protein phosphatase 2A B55 regulatory subunits reveal B55-mediated regulation of replication protein A under replication stress. , Wang F, Zhu S, Fisher LA, Wang W, Oakley GG, Li C, Peng A ., Sci Rep. February 8, 2018; 8 (1): 2683.
APE2 promotes DNA damage response pathway from a single-strand break. , Lin Y, Bai L, Cupello S, Hossain MA, Deem B, McLeod M, Raj J, Yan S ., Nucleic Acids Res. March 16, 2018; 46 (5): 2479-2494.
Mitotic entry drives replisome disassembly at stalled replication forks. , Hashimoto Y, Tanaka H., Biochem Biophys Res Commun. November 17, 2018; 506 (1): 108-113.
Methods for Studying DNA Single-Strand Break Repair and Signaling in Xenopus laevis Egg Extracts. , Lin Y, Ha A, Yan S ., Methods Mol Biol. January 1, 2019; 1999 161-172.
Claspin - checkpoint adaptor and DNA replication factor. , Smits VAJ, Cabrera E, Freire R, Gillespie DA., FEBS J. February 1, 2019; 286 (3): 441-455.
TRAIP is a master regulator of DNA interstrand crosslink repair. , Wu RA, Semlow DR, Kamimae-Lanning AN, Kochenova OV, Chistol G, Hodskinson MR, Amunugama R, Sparks JL, Wang M, Deng L, Mimoso CA, Low E, Patel KJ, Walter JC ., Nature. March 1, 2019; 567 (7747): 267-272.
Mitotic CDK Promotes Replisome Disassembly, Fork Breakage, and Complex DNA Rearrangements. , Deng L, Wu RA, Sonneville R, Kochenova OV, Labib K, Pellman D, Walter JC ., Mol Cell. March 7, 2019; 73 (5): 915-929.e6.
Mechanical Force Induces Phosphorylation-Mediated Signaling that Underlies Tissue Response and Robustness in Xenopus Embryos. , Hashimoto Y, Kinoshita N, Greco TM, Federspiel JD, Jean Beltran PM, Ueno N , Cristea IM., Cell Syst. March 27, 2019; 8 (3): 226-241.e7.
RPA-coated single-stranded DNA promotes the ETAA1-dependent activation of ATR. , Lyu K, Kumagai A , Dunphy WG ., Cell Cycle. April 1, 2019; 18 (8): 898-913.
NEIL1 and NEIL2 DNA glycosylases protect neural crest development against mitochondrial oxidative stress. , Han D, Schomacher L, Schüle KM, Mallick M, Musheev MU, Karaulanov E, Krebs L, von Seggern A, Niehrs C ., Elife. September 30, 2019; 8
Distinct roles of XRCC1 in genome integrity in Xenopus egg extracts. , Cupello S, Lin Y, Yan S ., Biochem J. December 23, 2019; 476 (24): 3791-3804.
Kinesin Kif2C in regulation of DNA double strand break dynamics and repair. , Zhu S, Paydar M, Wang F, Li Y, Wang L, Barrette B, Bessho T, Kwok BH, Peng A ., Elife. January 17, 2020; 9
Polo-like kinase 1 (Plk1) is a positive regulator of DNA replication in the Xenopus in vitro system. , Ciardo D, Haccard O , Narassimprakash H, Chiodelli V, Goldar A, Marheineke K ., Cell Cycle. July 1, 2020; 19 (14): 1817-1832.
Ongoing replication forks delay the nuclear envelope breakdown upon mitotic entry. , Hashimoto Y, Tanaka H., J Biol Chem. January 1, 2021; 296 100033.
Function and molecular mechanisms of APE2 in genome and epigenome integrity. , Lin Y, McMahon A, Driscoll G, Bullock S, Zhao J, Yan S ., Mutat Res Rev Mutat Res. January 1, 2021; 787 108347.
Structure-function analysis of TOPBP1's role in ATR signaling using the DSB-mediated ATR activation in Xenopus egg extracts (DMAX) system. , Montales K, Kim A, Ruis K, Michael WM., Sci Rep. January 11, 2021; 11 (1): 467.
Fosl1 is vital to heart regeneration upon apex resection in adult Xenopus tropicalis. , Wu HY, Zhou YM, Liao ZQ, Zhong JW, Liu YB , Zhao H , Liang CQ, Huang RJ, Park KS, Feng SS, Zheng L, Cai DQ, Qi XF., NPJ Regen Med. June 29, 2021; 6 (1): 36.
Cell cycle control during early embryogenesis. , Brantley SE, Di Talia S., Development. July 1, 2021; 148 (13):
Organization of DNA Replication Origin Firing in Xenopus Egg Extracts: The Role of Intra-S Checkpoint. , Ciardo D, Haccard O , Narassimprakash H, Arbona JM, Hyrien O , Audit B, Marheineke K , Goldar A., Genes (Basel). August 9, 2021; 12 (8):
Polo-like kinase 1 (Plk1) regulates DNA replication origin firing and interacts with Rif1 in Xenopus. , Ciardo D, Haccard O , Narassimprakash H, Cornu D, Guerrera IC, Goldar A, Marheineke K ., Nucleic Acids Res. September 27, 2021; 49 (17): 9851-9869.
Apurinic/Apyrimidinic Endonuclease 2 (APE2): An ancillary enzyme for contextual base excision repair mechanisms to preserve genome stability. , Chaudhari S, Ware AP, Jayaram P, Gorthi SP, El-Khamisy SF, Satyamoorthy K., Biochimie. November 1, 2021; 190 70-90.
Delineation of a minimal topoisomerase II binding protein 1 for regulated activation of ATR at DNA double-strand breaks. , Ruis K, Huynh O, Montales K, Barr NA, Michael WM., J Biol Chem. July 1, 2022; 298 (7): 101992.
The p97 segregase cofactor Ubxn7 facilitates replisome disassembly during S-phase. , Tarcan Z, Poovathumkadavil D, Skagia A, Gambus A., J Biol Chem. August 1, 2022; 298 (8): 102234.
MRN-dependent and independent pathways for recruitment of TOPBP1 to DNA double-strand breaks. , Montales K, Ruis K, Lindsay H , Michael WM., PLoS One. August 2, 2022; 17 (8): e0271905.