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Cdx1 and Gsc distinctly regulate the transcription of BMP4 target gene ventx3.2 by directly binding to the proximal promoter region in Xenopus gastrulae. , Goutam RS, Kumar V , Lee U, Kim J ., Mol Cells. April 1, 2024; 47 (4): 100058.
ZSWIM4 regulates embryonic patterning and BMP signaling by promoting nuclear Smad1 degradation. , Wang C , Liu Z, Zeng Y, Zhou L, Long Q, Hassan IU, Zhang Y , Qi X, Cai D, Mao B , Lu G, Sun J, Yao Y, Deng Y, Zhao Q, Feng B, Zhou Q, Chan WY, Zhao H ., EMBO Rep. February 1, 2024; 25 (2): 646-671.
Mitochondrial leak metabolism induces the Spemann-Mangold Organizer via Hif-1α in Xenopus. , MacColl Garfinkel A, Mnatsakanyan N, Patel JH, Wills AE , Shteyman A, Smith PJS, Alavian KN, Jonas EA, Khokha MK ., Dev Cell. November 20, 2023; 58 (22): 2597-2613.e4.
Membrane potential drives the exit from pluripotency and cell fate commitment via calcium and mTOR. , Sempou E, Kostiuk V, Zhu J, Cecilia Guerra M, Tyan L, Hwang W, Camacho-Aguilar E, Caplan MJ, Zenisek D, Warmflash A, Owens NDL, Khokha MK ., Nat Commun. November 5, 2022; 13 (1): 6681.
Bmp4 Synexpression Gene, Sizzled, Transcription Is Collectively Modulated by Smad1 and Ventx1.1/Ventx2.1 in Early Xenopus Embryos. , Rehman ZU , Tayyaba F, Lee U, Kim J ., Int J Mol Sci. November 1, 2022; 23 (21):
Quantitative analysis of transcriptome dynamics provides novel insights into developmental state transitions. , Johnson K, Freedman S, Braun R, LaBonne C ., BMC Genomics. October 23, 2022; 23 (1): 723.
The homeodomain transcription factor Ventx2 regulates respiratory progenitor cell number and differentiation timing during Xenopus lung development. , Rankin SA , Rankin SA , Zorn AM ., Dev Growth Differ. September 1, 2022; 64 (7): 347-361.
Ventx Family and Its Functional Similarities with Nanog: Involvement in Embryonic Development and Cancer Progression. , Kumar S , Kumar S , Kumar V , Li W , Kim J ., Int J Mol Sci. March 1, 2022; 23 (5):
Goosecoid Controls Neuroectoderm Specification via Dual Circuits of Direct Repression and Indirect Stimulation in Xenopus Embryos. , Umair Z, Kumar V , Goutam RS, Kumar S , Kumar S , Lee U, Kim J ., Mol Cells. October 31, 2021; 44 (10): 723-735.
Foxd4l1.1 Negatively Regulates Chordin Transcription in Neuroectoderm of Xenopus Gastrula. , Kumar V , Goutam RS, Umair Z, Park S, Lee U, Kim J ., Cells. October 17, 2021; 10 (10):
The atypical RNA-binding protein Taf15 regulates dorsoanterior neural development through diverse mechanisms in Xenopus tropicalis. , DeJong CS, Dichmann DS , Exner CRT, Xu Y , Xu Y , Harland RM ., Development. August 1, 2021; 148 (15):
Smad2 and Smad3 differentially modulate chordin transcription via direct binding on the distal elements in gastrula Xenopus embryos. , Kumar V , Umair Z, Kumar S , Kumar S , Lee U, Kim J ., Biochem Biophys Res Commun. June 25, 2021; 559 168-175.
A temporally resolved transcriptome for developing "Keller" explants of the Xenopus laevis dorsal marginal zone. , Kakebeen AD, Huebner RJ, Shindo A, Kwon K, Kwon T , Wills AE , Wallingford JB ., Dev Dyn. May 1, 2021; 250 (5): 717-731.
Cytoskeletal Protein Zyxin Inhibits the Activity of Genes Responsible for Embryonic Stem Cell Status. , Parshina EA, Eroshkin FM, Оrlov EE, Gyoeva FK, Shokhina AG, Staroverov DB, Belousov VV, Zhigalova NA, Prokhortchouk EB, Zaraisky AG , Martynova NY., Cell Rep. November 17, 2020; 33 (7): 108396.
TMEM79/MATTRIN defines a pathway for Frizzled regulation and is required for Xenopus embryogenesis. , Chen M, Amado N, Tan J, Reis A, Ge M, Abreu JG , He X ., Elife. September 14, 2020; 9
Xvent-2 expression in regenerating Xenopus tails. , Pshennikova ES, Voronina AS., Stem Cell Investig. July 20, 2020; 7 13.
Natural size variation among embryos leads to the corresponding scaling in gene expression. , Leibovich A, Edri T, Klein SL, Moody SA , Fainsod A ., Dev Biol. June 15, 2020; 462 (2): 165-179.
Modeling Bainbridge-Ropers Syndrome in Xenopus laevis Embryos. , Lichtig H, Artamonov A, Polevoy H, Reid CD, Bielas SL, Frank D ., Front Physiol. January 1, 2020; 11 75.
BAP1 regulates epigenetic switch from pluripotency to differentiation in developmental lineages giving rise to BAP1-mutant cancers. , Kuznetsov JN , Aguero TH , Owens DA , Kurtenbach S, Field MG, Durante MA, Rodriguez DA, King ML , Harbour JW., Sci Adv. September 18, 2019; 5 (9): eaax1738.
Ventx1.1 competes with a transcriptional activator Xcad2 to regulate negatively its own expression. , Kumar S , Kumar S , Umair Z, Kumar V , Lee U, Choi SC, Kim J ., BMB Rep. June 1, 2019; 52 (6): 403-408.
Barhl2 maintains T cell factors as repressors and thereby switches off the Wnt/ β-Catenin response driving Spemann organizer formation. , Sena E, Rocques N, Borday C, Muhamad Amin HS, Parain K , Sitbon D , Chesneau A, Durand BC ., Development. May 22, 2019; 146 (10):
Leukemia inhibitory factor signaling in Xenopus embryo: Insights from gain of function analysis and dominant negative mutant of the receptor. , Jalvy S, Veschambre P, Fédou S, Rezvani HR, Thézé N , Thiébaud P ., Dev Biol. March 15, 2019; 447 (2): 200-213.
A transition from SoxB1 to SoxE transcription factors is essential for progression from pluripotent blastula cells to neural crest cells. , Buitrago-Delgado E, Schock EN , Nordin K, LaBonne C ., Dev Biol. December 15, 2018; 444 (2): 50-61.
Fam46a regulates BMP-dependent pre-placodal ectoderm differentiation in Xenopus. , Watanabe T, Yamamoto T , Tsukano K, Hirano S, Horikawa A, Michiue T ., Development. October 26, 2018; 145 (20):
Histone deacetylase activity has an essential role in establishing and maintaining the vertebrate neural crest. , Rao A, LaBonne C ., Development. August 8, 2018; 145 (15):
Xbra and Smad-1 cooperate to activate the transcription of neural repressor ventx1.1 in Xenopus embryos. , Kumar S , Kumar S , Umair Z, Yoon J, Lee U, Kim SC, Park JB , Lee JY , Kim J ., Sci Rep. July 30, 2018; 8 (1): 11391.
Notch1 is asymmetrically distributed from the beginning of embryogenesis and controls the ventral center. , Castro Colabianchi AM, Revinski DR, Encinas PI, Baez MV, Monti RJ, Rodríguez Abinal M, Kodjabachian L , Franchini LF, López SL ., Development. July 17, 2018; 145 (14):
A gene regulatory network underlying the formation of pre-placodal ectoderm in Xenopus laevis. , Maharana SK , Schlosser G ., BMC Biol. July 16, 2018; 16 (1): 79.
Tbx2 is required for the suppression of mesendoderm during early Xenopus development. , Teegala S , Chauhan R, Lei E, Weinstein DC ., Dev Dyn. July 1, 2018; 247 (7): 903-913.
The dynamics of gene expression in vertebrate embryogenesis at single-cell resolution. , Briggs JA, Weinreb C, Wagner DE, Megason S, Peshkin L , Kirschner MW , Klein AM ., Science. June 1, 2018; 360 (6392):
PAWS1 controls Wnt signalling through association with casein kinase 1α. , Bozatzi P, Dingwell KS, Wu KZ, Cooper F, Cummins TD, Hutchinson LD, Vogt J, Wood NT, Macartney TJ, Varghese J, Gourlay R, Campbell DG, Smith JC , Sapkota GP., EMBO Rep. April 1, 2018; 19 (4):
Timing is everything: Reiterative Wnt, BMP and RA signaling regulate developmental competence during endoderm organogenesis. , Rankin SA , Rankin SA , McCracken KW, Luedeke DM, Han L , Wells JM , Shannon JM, Zorn AM ., Dev Biol. February 1, 2018; 434 (1): 121-132.
FGF mediated MAPK and PI3K/Akt Signals make distinct contributions to pluripotency and the establishment of Neural Crest. , Geary L, LaBonne C ., Elife. January 19, 2018; 7
Xenopus Hybrids Provide Insight Into Cell and Organism Size Control. , Gibeaux R, Miller K, Acker R, Kwon T , Heald R ., Front Physiol. January 1, 2018; 9 1758.
Lineage commitment of embryonic cells involves MEK1-dependent clearance of pluripotency regulator Ventx2. , Scerbo P , Marchal L, Kodjabachian L ., Elife. June 27, 2017; 6
Identification of new regulators of embryonic patterning and morphogenesis in Xenopus gastrulae by RNA sequencing. , Popov IK, Kwon T , Crossman DK, Crowley MR, Wallingford JB , Chang C ., Dev Biol. June 15, 2017; 426 (2): 429-441.
A catalog of Xenopus tropicalis transcription factors and their regional expression in the early gastrula stage embryo. , Blitz IL , Paraiso KD , Patrushev I , Chiu WTY , Cho KWY , Gilchrist MJ ., Dev Biol. June 15, 2017; 426 (2): 409-417.
Conservatism and variability of gene expression profiles among homeologous transcription factors in Xenopus laevis. , Watanabe M, Yasuoka Y , Mawaribuchi S, Kuretani A, Ito M, Kondo M, Ochi H , Ogino H , Fukui A , Taira M , Kinoshita T., Dev Biol. June 15, 2017; 426 (2): 301-324.
A gene regulatory program controlling early Xenopus mesendoderm formation: Network conservation and motifs. , Charney RM , Paraiso KD , Blitz IL , Cho KWY., Semin Cell Dev Biol. June 1, 2017; 66 12-24.
Brg1 chromatin remodeling ATPase balances germ layer patterning by amplifying the transcriptional burst at midblastula transition. , Wagner G, Singhal N, Nicetto D, Straub T, Kremmer E, Rupp RAW ., PLoS Genet. May 12, 2017; 13 (5): e1006757.
Genomic integration of Wnt/ β-catenin and BMP/Smad1 signaling coordinates foregut and hindgut transcriptional programs. , Stevens ML , Chaturvedi P , Rankin SA , Rankin SA , Macdonald M, Jagannathan S, Yukawa M, Barski A, Zorn AM ., Development. April 1, 2017; 144 (7): 1283-1295.
Ubiquitin C-terminal hydrolase37 regulates Tcf7 DNA binding for the activation of Wnt signalling. , Han W, Lee H , Lee H , Han JK ., Sci Rep. February 15, 2017; 7 42590.
FoxD1 protein interacts with Wnt and BMP signaling to differentially pattern mesoderm and neural tissue. , Polevoy H, Malyarova A, Fonar Y, Elias S, Frank D ., Int J Dev Biol. January 1, 2017; 61 (3-4-5): 293-302.
The MLL/Setd1b methyltransferase is required for the Spemann's organizer gene activation in Xenopus. , Lin H, Min Z, Tao Q , Tao Q ., Mech Dev. November 1, 2016; 142 1-9.
Tril targets Smad7 for degradation to allow hematopoietic specification in Xenopus embryos. , Green YS, Kwon S, Mimoto MS, Xie Y, Christian JL ., Development. November 1, 2016; 143 (21): 4016-4026.
Identification of microRNAs and microRNA targets in Xenopus gastrulae: The role of miR-26 in the regulation of Smad1. , Liu C, Lou CH, Shah V , Ritter R, Talley J, Soibam B, Benham A, Zhu H, Perez E, Shieh YE, Gunaratne PH, Sater AK ., Dev Biol. January 1, 2016; 409 (1): 26-38.
Kdm2a/b Lysine Demethylases Regulate Canonical Wnt Signaling by Modulating the Stability of Nuclear β-Catenin. , Lu L, Gao Y, Zhang Z , Cao Q, Zhang X, Zou J, Cao Y ., Dev Cell. June 22, 2015; 33 (6): 660-74.
NEURODEVELOPMENT. Shared regulatory programs suggest retention of blastula-stage potential in neural crest cells. , Buitrago-Delgado E, Nordin K, Rao A, Geary L, LaBonne C ., Science. June 19, 2015; 348 (6241): 1332-5.
Notum is required for neural and head induction via Wnt deacylation, oxidation, and inactivation. , Zhang X, Cheong SM, Amado NG, Reis AH, MacDonald BT, Zebisch M, Jones EY, Abreu JG , He X ., Dev Cell. March 23, 2015; 32 (6): 719-30.
The serpin PN1 is a feedback regulator of FGF signaling in germ layer and primary axis formation. , Acosta H, Iliev D, Grahn TH, Gouignard N , Maccarana M, Griesbach J, Herzmann S, Sagha M, Climent M , Pera EM ., Development. March 15, 2015; 142 (6): 1146-58.