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Xotx genes in the developing brain of Xenopus laevis. , Kablar B, Vignali R , Menotti L, Pannese M, Andreazzoli M , Polo C, Giribaldi MG, Boncinelli E , Barsacchi G., Mech Dev. April 1, 1996; 55 (2): 145-58.
Activating and repressing signals in head development: the role of Xotx1 and Xotx2. , Andreazzoli M , Pannese M, Boncinelli E ., Development. May 1, 1997; 124 (9): 1733-43.
Otx1 gene-controlled morphogenesis of the horizontal semicircular canal and the origin of the gnathostome characteristics. , Mazan S, Jaillard D, Baratte B, Janvier P., Evol Dev. January 1, 2000; 2 (4): 186-93.
Xotx1 maternal transcripts are vegetally localized in Xenopus laevis oocytes. , Pannese M, Cagliani R, Pardini CL, Boncinelli E ., Mech Dev. January 1, 2000; 90 (1): 111-4.
Cloning a novel developmental regulating gene, Xotx5: its potential role in anterior formation in Xenopus laevis. , Kuroda H , Hayata T, Eisaki A, Asashima M ., Dev Growth Differ. April 1, 2000; 42 (2): 87-93.
Otx genes in the development and evolution of the vertebrate brain. , Boyl PP, Signore M, Annino A, Barbera JP, Acampora D, Simeone A., Int J Dev Neurosci. July 1, 2001; 19 (4): 353-63.
Structural evolution of Otx genes in craniates. , Germot A, Lecointre G, Plouhinec JL, Le Mentec C, Girardot F , Mazan S., Mol Biol Evol. September 1, 2001; 18 (9): 1668-78.
Structure and expression of an Otx5-related gene in the dogfish Scyliorhinus canicula: evidence for a conserved role of Otx5 and Crxgenes in the specification of photoreceptors. , Sauka-Spengler T , Baratte B, Shi L, Mazan S., Dev Genes Evol. December 1, 2001; 211 (11): 533-44.
Vegetal localization of maternal mRNAs is disrupted by VegT depletion. , Heasman J , Wessely O , Langland R, Craig EJ, Kessler DS ., Dev Biol. December 15, 2001; 240 (2): 377-86.
The role of Pax2 in mouse inner ear development. , Burton Q, Cole LK, Mulheisen M, Chang W, Wu DK., Dev Biol. August 1, 2004; 272 (1): 161-75.
Systematic screening for genes specifically expressed in the anterior neuroectoderm during early Xenopus development. , Takahashi N, Tochimoto N, Ohmori SY, Mamada H, Itoh M, Inamori M, Shinga J, Osada S, Taira M ., Int J Dev Biol. January 1, 2005; 49 (8): 939-51.
Xenopus aristaless-related homeobox ( xARX) gene product functions as both a transcriptional activator and repressor in forebrain development. , Seufert DW , Prescott NL, El-Hodiri HM ., Dev Dyn. February 1, 2005; 232 (2): 313-24.
Identification of asymmetrically localized transcripts along the animal-vegetal axis of the Xenopus egg. , Kataoka K, Tazaki A , Kitayama A, Ueno N , Watanabe K , Mochii M ., Dev Growth Differ. October 1, 2005; 47 (8): 511-21.
Evolution of axis specification mechanisms in jawed vertebrates: insights from a chondrichthyan. , Coolen M, Sauka-Spengler T , Nicolle D, Le-Mentec C, Lallemand Y, Da Silva C, Plouhinec JL, Robert B, Wincker P, Shi DL , Mazan S., PLoS One. April 18, 2007; 2 (4): e374.
Intracellular expression profiles measured by real-time PCR tomography in the Xenopus laevis oocyte. , Sindelka R , Jonák J , Hands R, Bustin SA, Kubista M., Nucleic Acids Res. February 1, 2008; 36 (2): 387-92.
xArx2: an aristaless homolog that regulates brain regionalization during development in Xenopus laevis. , Wolanski M, Khosrowshahian F, Kelly LE, El-Hodiri HM , Crawford MJ ., Genesis. January 1, 2009; 47 (1): 19-31.
Identification of germ plasm-associated transcripts by microarray analysis of Xenopus vegetal cortex RNA. , Cuykendall TN , Houston DW ., Dev Dyn. June 1, 2010; 239 (6): 1838-48.
The origin and evolution of ARGFX homeobox loci in mammalian radiation. , Li G, Holland PW ., BMC Evol Biol. June 17, 2010; 10 182.
The biochemical anatomy of cortical inhibitory synapses. , Heller EA, Zhang W, Selimi F, Earnheart JC, Ślimak MA, Santos-Torres J, Ibañez-Tallon I, Aoki C, Chait BT, Heintz N., PLoS One. January 1, 2012; 7 (6): e39572.
Organization of the gymnotiform fish pallium in relation to learning and memory: IV. Expression of conserved transcription factors and implications for the evolution of dorsal telencephalon. , Harvey-Girard E, Giassi AC, Ellis W, Maler L., J Comp Neurol. October 15, 2012; 520 (15): 3395-413.
Identification and evolution of molecular domains involved in differentiating the cement gland-promoting activity of Otx proteins in Xenopus laevis. , Mancini P , Castelli M, Vignali R ., Mech Dev. January 1, 2013; 130 (11-12): 628-39.
Single blastomere expression profiling of Xenopus laevis embryos of 8 to 32-cells reveals developmental asymmetry. , Flachsova M, Sindelka R , Kubista M., Sci Rep. January 1, 2013; 3 2278.
Microarray identification of novel genes downstream of Six1, a critical factor in cranial placode, somite, and kidney development. , Yan B , Neilson KM , Ranganathan R, Maynard T, Streit A, Moody SA ., Dev Dyn. February 1, 2015; 244 (2): 181-210.
An Evolutionarily Conserved Network Mediates Development of the zona limitans intrathalamica, a Sonic Hedgehog-Secreting Caudal Forebrain Signaling Center. , Sena E, Feistel K , Durand BC ., J Dev Biol. October 20, 2016; 4 (4):
Direct reprogramming of fibroblasts into renal tubular epithelial cells by defined transcription factors. , Kaminski MM, Tosic J, Kresbach C, Engel H, Klockenbusch J, Müller AL, Pichler R, Grahammer F, Kretz O, Huber TB, Walz G , Arnold SJ, Lienkamp SS ., Nat Cell Biol. December 1, 2016; 18 (12): 1269-1280.
High-throughput analysis reveals novel maternal germline RNAs crucial for primordial germ cell preservation and proper migration. , Owens DA , Butler AM, Aguero TH , Newman KM, Van Booven D, King ML ., Development. January 15, 2017; 144 (2): 292-304.
A gene regulatory program controlling early Xenopus mesendoderm formation: Network conservation and motifs. , Charney RM , Paraiso KD , Blitz IL , Cho KWY., Semin Cell Dev Biol. June 1, 2017; 66 12-24.
Conservatism and variability of gene expression profiles among homeologous transcription factors in Xenopus laevis. , Watanabe M, Yasuoka Y , Mawaribuchi S, Kuretani A, Ito M, Kondo M, Ochi H , Ogino H , Fukui A , Taira M , Kinoshita T., Dev Biol. June 15, 2017; 426 (2): 301-324.
A molecular atlas of the developing ectoderm defines neural, neural crest, placode, and nonneural progenitor identity in vertebrates. , Plouhinec JL, Medina-Ruiz S, Borday C, Bernard E, Vert JP, Eisen MB, Harland RM , Monsoro-Burq AH ., PLoS Biol. October 19, 2017; 15 (10): e2004045.
Comparison of oocyte mRNA localization patterns in sterlet Acipenser ruthenus and African clawed frog Xenopus laevis. , Pocherniaieva K, Sidova M, Havelka M, Saito T, Psenicka M, Sindelka R , Kaspar V., J Exp Zool B Mol Dev Evol. May 1, 2018; 330 (3): 181-187.
Asymmetric distribution of biomolecules of maternal origin in the Xenopus laevis egg and their impact on the developmental plan. , Sindelka R , Abaffy P, Qu Y, Tomankova S, Sidova M, Naraine R, Kolar M, Peuchen E , Sun L, Dovichi N , Kubista M., Sci Rep. May 29, 2018; 8 (1): 8315.
Endodermal Maternal Transcription Factors Establish Super-Enhancers during Zygotic Genome Activation. , Paraiso KD , Blitz IL , Coley M, Cheung J, Sudou N , Taira M , Cho KWY ., Cell Rep. June 4, 2019; 27 (10): 2962-2977.e5.
Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endoderm gene regulatory network. , Mukherjee S , Chaturvedi P , Rankin SA , Rankin SA , Fish MB, Wlizla M , Paraiso KD , MacDonald M, Chen X, Weirauch MT, Blitz IL , Cho KW , Zorn AM ., Elife. September 7, 2020; 9
A temporally resolved transcriptome for developing "Keller" explants of the Xenopus laevis dorsal marginal zone. , Kakebeen AD, Huebner RJ, Shindo A, Kwon K, Kwon T , Wills AE , Wallingford JB ., Dev Dyn. May 1, 2021; 250 (5): 717-731.
Temporal and spatial transcriptomic dynamics across brain development in Xenopus laevis tadpoles. , Ta AC , Huang LC, McKeown CR , Bestman JE , Van Keuren-Jensen K, Cline HT ., G3 (Bethesda). January 4, 2022; 12 (1):
Uncovering the mesendoderm gene regulatory network through multi-omic data integration. , Jansen C, Paraiso KD , Zhou JJ , Blitz IL , Fish MB, Charney RM , Cho JS, Yasuoka Y , Sudou N , Bright AR, Wlizla M , Veenstra GJC , Taira M , Zorn AM , Mortazavi A, Cho KWY., Cell Rep. February 15, 2022; 38 (7): 110364.
Quantitative analysis of transcriptome dynamics provides novel insights into developmental state transitions. , Johnson K, Freedman S, Braun R, LaBonne C ., BMC Genomics. October 23, 2022; 23 (1): 723.
A new atlas to study embryonic cell types in Xenopus. , Petrova K , Tretiakov M, Kotov A, Monsoro-Burq AH , Peshkin L ., Dev Biol. July 1, 2024; 511 76-83.