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Negative regulation of transcription by the type II arginine methyltransferase PRMT5. , Fabbrizio E, El Messaoudi S, Polanowska J, Paul C, Cook JR, Lee JH , Negre V, Rousset M, Pestka S, Le Cam A, Sardet C., EMBO Rep. July 1, 2002; 3 (7): 641-5.
Sequence and expression of FoxB2 ( XFD-5) and FoxI1c ( XFD-10) in Xenopus embryogenesis. , Pohl BS, Knöchel S , Dillinger K , Knöchel W ., Mech Dev. September 1, 2002; 117 (1-2): 283-7.
Chromatin fiber folding: requirement for the histone H4 N-terminal tail. , Dorigo B, Schalch T, Bystricky K, Richmond TJ., J Mol Biol. March 14, 2003; 327 (1): 85-96.
Progesterone and glucocorticoid receptors recruit distinct coactivator complexes and promote distinct patterns of local chromatin modification. , Li X, Wong J, Tsai SY, Tsai MJ, O'Malley BW., Mol Cell Biol. June 1, 2003; 23 (11): 3763-73.
Regulation of Msx genes by a Bmp gradient is essential for neural crest specification. , Tribulo C , Aybar MJ , Nguyen VH, Mullins MC, Mayor R ., Development. December 1, 2003; 130 (26): 6441-52.
The enhancement of histone H4 and H2A serine 1 phosphorylation during mitosis and S-phase is evolutionarily conserved. , Barber CM, Turner FB, Wang Y, Hagstrom K, Taverna SD, Mollah S, Ueberheide B, Meyer BJ, Hunt DF, Cheung P, Allis CD ., Chromosoma. May 1, 2004; 112 (7): 360-71.
The intracellular domain of X- Serrate-1 is cleaved and suppresses primary neurogenesis in Xenopus laevis. , Kiyota T, Kinoshita T., Mech Dev. June 1, 2004; 121 (6): 573-85.
Temporal analysis of the early BMP functions identifies distinct anti- organizer and mesoderm patterning phases. , Marom K, Levy V, Pillemer G, Fainsod A ., Dev Biol. June 15, 2005; 282 (2): 442-54.
Isolation and comparative expression analysis of the Myc-regulatory proteins Mad1, Mad3, and Mnt during Xenopus development. , Juergens K, Rust B, Pieler T , Henningfeld KA ., Dev Dyn. August 1, 2005; 233 (4): 1554-9.
XMam1, Xenopus Mastermind1, induces neural gene expression in a Notch-independent manner. , Katada T, Ito M, Kojima Y, Miyatani S, Kinoshita T., Mech Dev. November 1, 2006; 123 (11): 851-9.
Structural basis for the histone chaperone activity of Asf1. , English CM, Adkins MW, Carson JJ, Churchill ME, Tyler JK., Cell. November 3, 2006; 127 (3): 495-508.
A role of D domain-related proteins in differentiation and migration of embryonic cells in Xenopus laevis. , Shibata T, Takahashi Y, Tasaki J, Saito Y, Izutsu Y , Maéno M., Mech Dev. January 1, 2008; 125 (3-4): 284-98.
Analysis of histones in Xenopus laevis. I. A distinct index of enriched variants and modifications exists in each cell type and is remodeled during developmental transitions. , Shechter D , Nicklay JJ, Chitta RK, Shabanowitz J, Hunt DF, Allis CD ., J Biol Chem. January 9, 2009; 284 (2): 1064-74.
Analysis of histones in Xenopus laevis. II. mass spectrometry reveals an index of cell type-specific modifications on H3 and H4. , Nicklay JJ, Shechter D , Chitta RK, Garcia BA, Shabanowitz J, Allis CD , Hunt DF., J Biol Chem. January 9, 2009; 284 (2): 1075-85.
Novel functions of protein arginine methyltransferase 1 in thyroid hormone receptor-mediated transcription and in the regulation of metamorphic rate in Xenopus laevis. , Matsuda H, Paul BD , Choi CY, Hasebe T , Shi YB ., Mol Cell Biol. February 1, 2009; 29 (3): 745-57.
The Gcn5 bromodomain of the SAGA complex facilitates cooperative and cross- tail acetylation of nucleosomes. , Li S, Shogren-Knaak MA., J Biol Chem. April 3, 2009; 284 (14): 9411-7.
Determinants of histone H4 N-terminal domain function during nucleosomal array oligomerization: roles of amino acid sequence, domain length, and charge density. , McBryant SJ, Klonoski J, Sorensen TC, Norskog SS, Williams S, Resch MG, Toombs JA, Hobdey SE, Hansen JC., J Biol Chem. June 19, 2009; 284 (25): 16716-22.
Recognition imaging of acetylated chromatin using a DNA aptamer. , Lin L, Fu Q, Williams BA, Azzaz AM, Shogren-Knaak MA, Chaput JC, Lindsay S., Biophys J. September 16, 2009; 97 (6): 1804-7.
Xenopus delta-catenin is essential in early embryogenesis and is functionally linked to cadherins and small GTPases. , Gu D, Sater AK , Ji H, Cho K, Clark M, Stratton SA, Barton MC, Lu Q, McCrea PD ., J Cell Sci. November 15, 2009; 122 (Pt 22): 4049-61.
Identification and developmental expression of Xenopus laevis SUMO proteases. , Wang Y, Mukhopadhyay D, Mathew S, Hasebe T , Heimeier RA, Azuma Y , Kolli N, Shi YB , Wilkinson KD, Dasso M., PLoS One. December 11, 2009; 4 (12): e8462.
Role of direct interactions between the histone H4 Tail and the H2A core in long range nucleosome contacts. , Sinha D, Shogren-Knaak MA., J Biol Chem. May 28, 2010; 285 (22): 16572-81.
Structure of RCC1 chromatin factor bound to the nucleosome core particle. , Makde RD, England JR, Yennawar HP, Tan S., Nature. September 30, 2010; 467 (7315): 562-6.
Nucleosome interactions and stability in an ordered nucleosome array model system. , Blacketer MJ, Feely SJ, Shogren-Knaak MA., J Biol Chem. November 5, 2010; 285 (45): 34597-607.
Stage-specific histone modification profiles reveal global transitions in the Xenopus embryonic epigenome. , Schneider TD, Arteaga-Salas JM, Mentele E, David R , Nicetto D, Imhof A, Rupp RA ., PLoS One. January 1, 2011; 6 (7): e22548.
HDAC activity is required during Xenopus tail regeneration. , Tseng AS , Carneiro K, Lemire JM , Levin M ., PLoS One. January 1, 2011; 6 (10): e26382.
The role of histone H4 biotinylation in the structure of nucleosomes. , Filenko NA, Kolar C, West JT, Smith SA, Hassan YI, Borgstahl GE, Zempleni J, Lyubchenko YL., PLoS One. January 7, 2011; 6 (1): e16299.
Barhl2 limits growth of the diencephalic primordium through Caspase3 inhibition of beta-catenin activation. , Juraver-Geslin HA , Ausseil JJ, Wassef M, Durand BC ., Proc Natl Acad Sci U S A. February 8, 2011; 108 (6): 2288-93.
EBF factors drive expression of multiple classes of target genes governing neuronal development. , Green YS, Vetter ML ., Neural Dev. April 30, 2011; 6 19.
Histone deacetylase activity is necessary for left- right patterning during vertebrate development. , Carneiro K, Donnet C, Rejtar T, Karger BL, Barisone GA, Díaz E, Kortagere S, Lemire JM , Levin M ., BMC Dev Biol. May 20, 2011; 11 29.
The development of the adult intestinal stem cells: Insights from studies on thyroid hormone-dependent amphibian metamorphosis. , Shi YB , Hasebe T , Fu L, Fujimoto K , Ishizuya-Oka A ., Cell Biosci. September 6, 2011; 1 (1): 30.
Characterization of Xenopus tissue inhibitor of metalloproteinases-2: a role in regulating matrix metalloproteinase activity during development. , Fu L, Sun G , Fiorentino M, Shi YB ., PLoS One. January 1, 2012; 7 (5): e36707.
MicroRNA-mediated mRNA translation activation in quiescent cells and oocytes involves recruitment of a nuclear microRNP. , Truesdell SS, Mortensen RD, Seo M, Schroeder JC, Lee JH , LeTonqueze O, Vasudevan S ., Sci Rep. January 1, 2012; 2 842.
Heterochromatin protein Sir3 induces contacts between the amino terminus of histone H4 and nucleosomal DNA. , Wang F, Li G, Altaf M, Lu C, Currie MA, Johnson A, Moazed D., Proc Natl Acad Sci U S A. May 21, 2013; 110 (21): 8495-500.
Validation of novel reference genes for RT-qPCR studies of gene expression in Xenopus tropicalis during embryonic and post-embryonic development. , Dhorne-Pollet S, Thélie A, Pollet N ., Dev Dyn. June 1, 2013; 242 (6): 709-17.
The Prdm13 histone methyltransferase encoding gene is a Ptf1a- Rbpj downstream target that suppresses glutamatergic and promotes GABAergic neuronal fate in the dorsal neural tube. , Hanotel J, Bessodes N, Thélie A, Hedderich M, Parain K , Van Driessche B, Brandão Kde O, Kricha S, Jorgensen MC, Grapin-Botton A, Serup P, Van Lint C, Perron M , Pieler T , Henningfeld KA , Bellefroid EJ ., Dev Biol. February 15, 2014; 386 (2): 340-57.
Quantitative proteomics of Xenopus laevis embryos: expression kinetics of nearly 4000 proteins during early development. , Sun L, Bertke MM, Champion MM , Zhu G, Huber PW , Dovichi NJ ., Sci Rep. February 26, 2014; 4 4365.
A distinct switch in interactions of the histone H4 tail domain upon salt-dependent folding of nucleosome arrays. , Pepenella S, Murphy KJ, Hayes JJ., J Biol Chem. September 26, 2014; 289 (39): 27342-27351.
Histone titration against the genome sets the DNA-to- cytoplasm threshold for the Xenopus midblastula transition. , Amodeo AA , Jukam D , Straight AF , Skotheim JM., Proc Natl Acad Sci U S A. March 10, 2015; 112 (10): E1086-95.
HDAC1 Regulates the Proliferation of Radial Glial Cells in the Developing Xenopus Tectum. , Tao Y, Ruan H, Guo X, Li L, Shen W., PLoS One. March 16, 2015; 10 (3): e0120118.
A cell-free CENP-A assembly system defines the chromatin requirements for centromere maintenance. , Westhorpe FG, Fuller CJ, Straight AF ., J Cell Biol. June 22, 2015; 209 (6): 789-801.
FoxD1 protein interacts with Wnt and BMP signaling to differentially pattern mesoderm and neural tissue. , Polevoy H, Malyarova A, Fonar Y, Elias S, Frank D ., Int J Dev Biol. January 1, 2017; 61 (3-4-5): 293-302.
Role of remodeling and spacing factor 1 in histone H2A ubiquitination-mediated gene silencing. , Zhang Z , Zhang Z , Jones AE, Wu W, Kim J , Kang Y, Bi X, Gu Y, Popov IK, Renfrow MB, Vassylyeva MN, Vassylyev DG, Giles KE, Chen D, Kumar A, Fan Y, Tong Y, Liu CF, An W, Chang C , Luo J, Chow LT, Wang H., Proc Natl Acad Sci U S A. September 19, 2017; 114 (38): E7949-E7958.
The secreted BMP antagonist ERFE is required for the development of a functional circulatory system in Xenopus. , Melchert J, Henningfeld KA , Richts S, Lingner T, Jonigk D, Pieler T ., Dev Biol. March 15, 2020; 459 (2): 138-148.
Stem cell development involves divergent thyroid hormone receptor subtype expression and epigenetic modifications in the Xenopus metamorphosing intestine. , Hasebe T , Fujimoto K , Buchholz DR , Ishizuya-Oka A ., Gen Comp Endocrinol. June 1, 2020; 292 113441.