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Summary Expression Phenotypes Gene Literature (91) GO Terms (12) Nucleotides (174) Proteins (66) Interactants (808) Wiki
XB-GENEPAGE-484864

Papers associated with sox17b.1



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20 paper(s) referencing morpholinos

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Retinoic acid control of pax8 during renal specification of Xenopus pronephros involves hox and meis3., Durant-Vesga J, Suzuki N, Ochi H, Le Bouffant R, Eschstruth A, Ogino H, Umbhauer M, Riou JF., Dev Biol. January 1, 2023; 493 17-28.                  


Genetically programmed retinoic acid deficiency during gastrulation phenocopies most known developmental defects due to acute prenatal alcohol exposure in FASD., Petrelli B, Oztürk A, Pind M, Ayele H, Fainsod A, Hicks GG., Front Cell Dev Biol. January 1, 2023; 11 1208279.                    


Regulation of gene expression downstream of a novel Fgf/Erk pathway during Xenopus development., Cowell LM, King M, West H, Broadsmith M, Genever P, Pownall ME, Isaacs HV., PLoS One. January 1, 2023; 18 (10): e0286040.                                  


Membrane potential drives the exit from pluripotency and cell fate commitment via calcium and mTOR., Sempou E, Kostiuk V, Zhu J, Cecilia Guerra M, Tyan L, Hwang W, Camacho-Aguilar E, Caplan MJ, Zenisek D, Warmflash A, Owens NDL, Khokha MK., Nat Commun. November 5, 2022; 13 (1): 6681.                                            


Quantitative analysis of transcriptome dynamics provides novel insights into developmental state transitions., Johnson K, Freedman S, Braun R, LaBonne C., BMC Genomics. October 23, 2022; 23 (1): 723.                                  


Uncovering the mesendoderm gene regulatory network through multi-omic data integration., Jansen C, Paraiso KD, Zhou JJ, Blitz IL, Fish MB, Charney RM, Cho JS, Yasuoka Y, Sudou N, Bright AR, Wlizla M, Veenstra GJC, Taira M, Zorn AM, Mortazavi A, Cho KWY., Cell Rep. February 15, 2022; 38 (7): 110364.                            


Abnormal left-right organizer and laterality defects in Xenopus embryos after formin inhibitor SMIFH2 treatment., Petri N, Nordbrink R, Tsikolia N, Kremnyov S., PLoS One. January 1, 2022; 17 (11): e0275164.        


Huntingtin CAG expansion impairs germ layer patterning in synthetic human 2D gastruloids through polarity defects., Galgoczi S, Ruzo A, Markopoulos C, Yoney A, Phan-Everson T, Li S, Haremaki T, Metzger JJ, Etoc F, Brivanlou AH., Development. October 1, 2021; 148 (19):               


Combinatorial transcription factor activities on open chromatin induce embryonic heterogeneity in vertebrates., Bright AR, van Genesen S, Li Q, Grasso A, Frölich S, van der Sande M, van Heeringen SJ, Veenstra GJC., EMBO J. May 3, 2021; 40 (9): e104913.                        


Dusp1 modulates activin/smad2 mediated germ layer specification via FGF signal inhibition in Xenopus embryos., Umair Z, Kumar S, Rafiq K, Kumar V, Reman ZU, Lee SH, Kim S, Lee JY, Lee U, Kim J., Anim Cells Syst (Seoul). November 27, 2020; 24 (6): 359-370.            


Hes5.9 Coordinate FGF and Notch Signaling to Modulate Gastrulation via Regulating Cell Fate Specification and Cell Migration in Xenopus tropicalis., Huang X, Zhang L, Yang S, Zhang Y, Wu M, Chen P., Genes (Basel). November 18, 2020; 11 (11):                   


Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endoderm gene regulatory network., Mukherjee S, Chaturvedi P, Rankin SA, Rankin SA, Fish MB, Wlizla M, Paraiso KD, MacDonald M, Chen X, Weirauch MT, Blitz IL, Cho KW, Zorn AM., Elife. September 7, 2020; 9                           


Endodermal Maternal Transcription Factors Establish Super-Enhancers during Zygotic Genome Activation., Paraiso KD, Blitz IL, Coley M, Cheung J, Sudou N, Taira M, Cho KWY., Cell Rep. June 4, 2019; 27 (10): 2962-2977.e5.                          


Liver Specification in the Absence of Cardiac Differentiation Revealed by Differential Sensitivity to Wnt/β Catenin Pathway Activation., Haworth K, Samuel L, Black S, Kirilenko P, Latinkic B., Front Physiol. January 1, 2019; 10 155.              


Serine Threonine Kinase Receptor-Associated Protein Deficiency Impairs Mouse Embryonic Stem Cells Lineage Commitment Through CYP26A1-Mediated Retinoic Acid Homeostasis., Jin L, Chang C, Pawlik KM, Datta A, Johnson LM, Vu T, Napoli JL, Datta PK., Stem Cells. September 1, 2018; 36 (9): 1368-1379.                      


Tbx2 is required for the suppression of mesendoderm during early Xenopus development., Teegala S, Chauhan R, Lei E, Weinstein DC., Dev Dyn. July 1, 2018; 247 (7): 903-913.                


Maternal Gdf3 is an obligatory cofactor in Nodal signaling for embryonic axis formation in zebrafish., Bisgrove BW, Su YC, Yost HJ., Elife. November 15, 2017; 6                 


Wbp2nl has a developmental role in establishing neural and non-neural ectodermal fates., Marchak A, Grant PA, Neilson KM, Datta Majumdar H, Yaklichkin S, Johnson D, Moody SA., Dev Biol. September 1, 2017; 429 (1): 213-224.                    


H3K4 Methylation-Dependent Memory of Somatic Cell Identity Inhibits Reprogramming and Development of Nuclear Transfer Embryos., Hörmanseder E, Simeone A, Allen GE, Bradshaw CR, Figlmüller M, Gurdon J, Jullien J., Cell Stem Cell. July 6, 2017; 21 (1): 135-143.e6.          


A catalog of Xenopus tropicalis transcription factors and their regional expression in the early gastrula stage embryo., Blitz IL, Paraiso KD, Patrushev I, Chiu WTY, Cho KWY, Gilchrist MJ., Dev Biol. June 15, 2017; 426 (2): 409-417.        


High variability of expression profiles of homeologous genes for Wnt, Hh, Notch, and Hippo signaling pathways in Xenopus laevis., Michiue T, Yamamoto T, Yasuoka Y, Goto T, Ikeda T, Nagura K, Nakayama T, Taira M, Kinoshita T., Dev Biol. June 15, 2017; 426 (2): 270-290.                  


The signalling receptor MCAM coordinates apical-basal polarity and planar cell polarity during morphogenesis., Gao Q, Zhang J, Wang X, Liu Y, He R, Liu X, Wang F, Feng J, Yang D, Wang Z, Meng A, Yan X., Nat Commun. June 7, 2017; 8 15279.              


A gene regulatory program controlling early Xenopus mesendoderm formation: Network conservation and motifs., Charney RM, Paraiso KD, Blitz IL, Cho KWY., Semin Cell Dev Biol. June 1, 2017; 66 12-24.    


Spemann organizer transcriptome induction by early beta-catenin, Wnt, Nodal, and Siamois signals in Xenopus laevis., Ding Y, Ploper D, Sosa EA, Colozza G, Moriyama Y, Benitez MD, Zhang K, Merkurjev D, De Robertis EM., Proc Natl Acad Sci U S A. April 11, 2017; 114 (15): E3081-E3090.                        


The Sox transcriptional factors: Functions during intestinal development in vertebrates., Fu L, Shi YB., Semin Cell Dev Biol. March 1, 2017; 63 58-67.        


Pax8 and Pax2 are specifically required at different steps of Xenopus pronephros development., Buisson I, Le Bouffant R, Futel M, Riou JF, Umbhauer M., Dev Biol. January 15, 2015; 397 (2): 175-90.                            


Carboxy terminus of GATA4 transcription factor is required for its cardiogenic activity and interaction with CDK4., Gallagher JM, Yamak A, Kirilenko P, Black S, Bochtler M, Lefebvre C, Nemer M, Latinkić BV., Mech Dev. November 1, 2014; 134 31-41.            


Sirtuin inhibitor Ex-527 causes neural tube defects, ventral edema formations, and gastrointestinal malformations in Xenopus laevis embryos., Ohata Y, Matsukawa S, Moriyama Y, Michiue T, Morimoto K, Sato Y, Kuroda H., Dev Growth Differ. August 1, 2014; 56 (6): 460-8.          


Hhex and Cer1 mediate the Sox17 pathway for cardiac mesoderm formation in embryonic stem cells., Liu Y, Kaneda R, Leja TW, Subkhankulova T, Tolmachov O, Minchiotti G, Schwartz RJ, Barahona M, Schneider MD., Stem Cells. June 1, 2014; 32 (6): 1515-26.              


Inference of the Xenopus tropicalis embryonic regulatory network and spatial gene expression patterns., Zheng Z, Christley S, Chiu WT, Blitz IL, Xie X, Cho KW, Nie Q., BMC Syst Biol. January 8, 2014; 8 3.                  


Coco regulates dorsoventral specification of germ layers via inhibition of TGFβ signalling., Bates TJ, Vonica A, Heasman J, Brivanlou AH, Bell E., Development. October 1, 2013; 140 (20): 4177-81.              


TBX3 Directs Cell-Fate Decision toward Mesendoderm., Weidgang CE, Russell R, Tata PR, Kühl SJ, Illing A, Müller M, Lin Q, Brunner C, Boeckers TM, Bauer K, Kartikasari AE, Guo Y, Radenz M, Bernemann C, Weiß M, Seufferlein T, Zenke M, Iacovino M, Kyba M, Schöler HR, Kühl M, Liebau S, Kleger A., Stem Cell Reports. August 29, 2013; 1 (3): 248-65.                


Lin28 proteins are required for germ layer specification in Xenopus., Faas L, Warrander FC, Maguire R, Ramsbottom SA, Quinn D, Genever P, Isaacs HV., Development. March 1, 2013; 140 (5): 976-86.                      


Suv4-20h histone methyltransferases promote neuroectodermal differentiation by silencing the pluripotency-associated Oct-25 gene., Nicetto D, Hahn M, Jung J, Schneider TD, Straub T, David R, Schotta G, Rupp RA., PLoS Genet. January 1, 2013; 9 (1): e1003188.                                                                


Klf4 is required for germ-layer differentiation and body axis patterning during Xenopus embryogenesis., Cao Q, Zhang X, Lu L, Yang L, Gao J, Gao Y, Ma H, Cao Y., Development. November 1, 2012; 139 (21): 3950-61.                  


The Mix family of homeobox genes--key regulators of mesendoderm formation during vertebrate development., Pereira LA, Wong MS, Mei Lim S, Stanley EG, Elefanty AG., Dev Biol. July 15, 2012; 367 (2): 163-77.        


fus/TLS orchestrates splicing of developmental regulators during gastrulation., Dichmann DS, Harland RM., Genes Dev. June 15, 2012; 26 (12): 1351-63.                        


Dynamic in vivo binding of transcription factors to cis-regulatory modules of cer and gsc in the stepwise formation of the Spemann-Mangold organizer., Sudou N, Yamamoto S, Ogino H, Taira M., Development. May 1, 2012; 139 (9): 1651-61.                  


Cell movements of the deep layer of non-neural ectoderm underlie complete neural tube closure in Xenopus., Morita H, Kajiura-Kobayashi H, Takagi C, Yamamoto TS, Nonaka S, Ueno N., Development. April 1, 2012; 139 (8): 1417-26.                        


KDEL tagging: a method for generating dominant-negative inhibitors of the secretion of TGF-beta superfamily proteins., Matsukawa S, Moriyama Y, Hayata T, Sasaki H, Ito Y, Asashima M, Kuroda H., Int J Dev Biol. January 1, 2012; 56 (5): 351-6.        


Expression analysis of the polypyrimidine tract binding protein (PTBP1) and its paralogs PTBP2 and PTBP3 during Xenopus tropicalis embryogenesis., Noiret M, Audic Y, Hardy S., Int J Dev Biol. January 1, 2012; 56 (9): 747-53.          


HEB and E2A function as SMAD/FOXH1 cofactors., Yoon SJ, Wills AE, Chuong E, Gupta R, Baker JC., Genes Dev. August 1, 2011; 25 (15): 1654-61.            


Geminin cooperates with Polycomb to restrain multi-lineage commitment in the early embryo., Lim JW, Hummert P, Mills JC, Kroll KL., Development. January 1, 2011; 138 (1): 33-44.                    


A conserved mechanism for vertebrate mesoderm specification in urodele amphibians and mammals., Swiers G, Chen YH, Johnson AD, Loose M., Dev Biol. July 1, 2010; 343 (1-2): 138-52.                              


Identification of a novel negative regulator of activin/nodal signaling in mesendodermal formation of Xenopus embryos., Cheong SM, Kim H, Han JK., J Biol Chem. June 19, 2009; 284 (25): 17052-60.                        


CDK9/cyclin complexes modulate endoderm induction by direct interaction with Mix.3/mixer., Zhu H, Doherty JR, Kuliyev E, Mead PE., Dev Dyn. June 1, 2009; 238 (6): 1346-57.      


Sox17 facilitates the differentiation of mouse embryonic stem cells into primitive and definitive endoderm in vitro., Qu XB, Pan J, Zhang C, Huang SY., Dev Growth Differ. September 1, 2008; 50 (7): 585-93.


Bmp signaling is necessary and sufficient for ventrolateral endoderm specification in Xenopus., Wills A, Dickinson K, Khokha M, Baker JC., Dev Dyn. August 1, 2008; 237 (8): 2177-86.      


Cephalic hedgehog expression is regulated directly by Sox17 in endoderm development of Xenopus laevis., Yagi Y, Ito Y, Kuhara S, Tashiro K., Cytotechnology. June 1, 2008; 57 (2): 151-9.


The role of FGF signaling in the establishment and maintenance of mesodermal gene expression in Xenopus., Fletcher RB, Harland RM., Dev Dyn. May 1, 2008; 237 (5): 1243-54.            

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