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Solubility phase transition of maternal RNAs during vertebrate oocyte-to- embryo transition. , Hwang H, Chen S, Ma M, Divyanshi, Fan HC, Borwick E, Böke E , Mei W, Yang J ., Dev Cell. December 4, 2023; 58 (23): 2776-2788.e5.
Uncovering the mesendoderm gene regulatory network through multi-omic data integration. , Jansen C, Paraiso KD , Zhou JJ , Blitz IL , Fish MB, Charney RM , Cho JS, Yasuoka Y , Sudou N , Bright AR, Wlizla M , Veenstra GJC , Taira M , Zorn AM , Mortazavi A, Cho KWY., Cell Rep. February 15, 2022; 38 (7): 110364.
The DNA-to- cytoplasm ratio broadly activates zygotic gene expression in Xenopus. , Jukam D , Kapoor RR, Straight AF , Skotheim JM., Curr Biol. October 11, 2021; 31 (19): 4269-4281.e8.
Modeling endoderm development and disease in Xenopus. , Edwards NA , Zorn AM ., Curr Top Dev Biol. January 1, 2021; 145 61-90.
Endodermal Maternal Transcription Factors Establish Super-Enhancers during Zygotic Genome Activation. , Paraiso KD , Blitz IL , Coley M, Cheung J, Sudou N , Taira M , Cho KWY ., Cell Rep. June 4, 2019; 27 (10): 2962-2977.e5.
The Wnt inhibitor Dkk1 is required for maintaining the normal cardiac differentiation program in Xenopus laevis. , Guo Y, Dorn T, Kühl SJ , Linnemann A, Rothe M, Pfister AS, Vainio S, Laugwitz KL, Moretti A, Kühl M ., Dev Biol. May 1, 2019; 449 (1): 1-13.
Increasing complexity: Mechanical guidance and feedback loops as a basis for self-organization in morphogenesis. , Bredov D, Volodyaev I., Biosystems. November 1, 2018; 173 133-156.
Serine Threonine Kinase Receptor-Associated Protein Deficiency Impairs Mouse Embryonic Stem Cells Lineage Commitment Through CYP26A1-Mediated Retinoic Acid Homeostasis. , Jin L, Chang C , Pawlik KM, Datta A, Johnson LM, Vu T, Napoli JL, Datta PK., Stem Cells. September 1, 2018; 36 (9): 1368-1379.
Genome-wide transcriptomics analysis identifies sox7 and sox18 as specifically regulated by gata4 in cardiomyogenesis. , Afouda BA , Lynch AT , de Paiva Alves E, Hoppler S ., Dev Biol. February 1, 2018; 434 (1): 108-120.
Genome-wide transcriptomics analysis of genes regulated by GATA4, 5 and 6 during cardiomyogenesis in Xenopus laevis. , Afouda BA , Lynch AT , de Paiva Alves E, Hoppler S ., Data Brief. January 17, 2018; 17 559-563.
Frizzled-7 is required for Xenopus heart development. , Abu-Elmagd M, Mulvaney J, Wheeler GN ., Biol Open. December 15, 2017; 6 (12): 1861-1868.
Genome-wide identification of thyroid hormone receptor targets in the remodeling intestine during Xenopus tropicalis metamorphosis. , Fu L, Das B, Matsuura K, Fujimoto K , Heimeier RA, Shi YB , Shi YB ., Sci Rep. July 25, 2017; 7 (1): 6414.
H3K4 Methylation-Dependent Memory of Somatic Cell Identity Inhibits Reprogramming and Development of Nuclear Transfer Embryos. , Hörmanseder E , Simeone A, Allen GE, Bradshaw CR , Figlmüller M, Gurdon J , Jullien J ., Cell Stem Cell. July 6, 2017; 21 (1): 135-143.e6.
A gene regulatory program controlling early Xenopus mesendoderm formation: Network conservation and motifs. , Charney RM , Paraiso KD , Blitz IL , Cho KWY., Semin Cell Dev Biol. June 1, 2017; 66 12-24.
A Retinoic Acid- Hedgehog Cascade Coordinates Mesoderm-Inducing Signals and Endoderm Competence during Lung Specification. , Rankin SA , Rankin SA , Han L , McCracken KW, Kenny AP , Anglin CT, Grigg EA, Crawford CM, Wells JM , Shannon JM, Zorn AM ., Cell Rep. June 28, 2016; 16 (1): 66-78.
Early ketamine exposure results in cardiac enlargement and heart dysfunction in Xenopus embryos. , Guo R, Liu G , Du M, Shi Y , Shi Y , Jiang P, Liu X, Liu L, Liu J , Xu Y , Xu Y ., BMC Anesthesiol. April 18, 2016; 16 23.
Xenopus as a model system for studying pancreatic development and diabetes. , Kofent J, Spagnoli FM ., Semin Cell Dev Biol. March 1, 2016; 51 106-16.
Predicting Variabilities in Cardiac Gene Expression with a Boolean Network Incorporating Uncertainty. , Grieb M, Burkovski A, Sträng JE, Kraus JM, Groß A, Palm G, Kühl M , Kestler HA., PLoS One. July 16, 2015; 10 (7): e0131832.
At new heights - endodermal lineages in development and disease. , Ober EA, Grapin-Botton A., Development. June 1, 2015; 142 (11): 1912-1917.
E2a is necessary for Smad2/3-dependent transcription and the direct repression of lefty during gastrulation. , Wills AE , Baker JC ., Dev Cell. February 9, 2015; 32 (3): 345-57.
The alternative splicing regulator Tra2b is required for somitogenesis and regulates splicing of an inhibitory Wnt11b isoform. , Dichmann DS , Walentek P , Harland RM ., Cell Rep. February 3, 2015; 10 (4): 527-36.
Genome-wide view of TGFβ/ Foxh1 regulation of the early mesendoderm program. , Chiu WT , Charney Le R, Blitz IL , Fish MB, Li Y, Biesinger J, Xie X, Cho KW ., Development. December 1, 2014; 141 (23): 4537-47.
Gene regulatory networks governing lung specification. , Rankin SA , Rankin SA , Zorn AM ., J Cell Biochem. August 1, 2014; 115 (8): 1343-50.
Comparative analysis reveals distinct and overlapping functions of Mef2c and Mef2d during cardiogenesis in Xenopus laevis. , Guo Y, Kühl SJ , Pfister AS, Cizelsky W, Denk S, Beer-Molz L, Kühl M ., PLoS One. January 17, 2014; 9 (1): e87294.
Inference of the Xenopus tropicalis embryonic regulatory network and spatial gene expression patterns. , Zheng Z, Christley S, Chiu WT , Blitz IL , Xie X, Cho KW , Nie Q., BMC Syst Biol. January 8, 2014; 8 3.
Atypical protein kinase C couples cell sorting with primitive endoderm maturation in the mouse blastocyst. , Saiz N, Grabarek JB, Sabherwal N , Papalopulu N , Plusa B., Development. November 1, 2013; 140 (21): 4311-22.
sfrp1 promotes cardiomyocyte differentiation in Xenopus via negative-feedback regulation of Wnt signalling. , Gibb N , Lavery DL, Hoppler S ., Development. April 1, 2013; 140 (7): 1537-49.
Two novel GATA6 mutations cause childhood-onset diabetes mellitus, pancreas malformation and congenital heart disease. , Gong M, Simaite D, Kühnen P, Heldmann M, Spagnoli F , Blankenstein O, Hübner N, Hussain K, Raile K., Horm Res Paediatr. January 1, 2013; 79 (4): 250-6.
Inhibition of heart formation by lithium is an indirect result of the disruption of tissue organization within the embryo. , Martin LK, Bratoeva M, Mezentseva NV, Bernanke JM, Remond MC, Ramsdell AF, Eisenberg CA, Eisenberg LM., Dev Growth Differ. February 1, 2012; 54 (2): 153-66.
Different requirements for GATA factors in cardiogenesis are mediated by non-canonical Wnt signaling. , Afouda BA , Hoppler S ., Dev Dyn. March 1, 2011; 240 (3): 649-62.
Identification and characterization of alternative promoters of zebrafish Rtn-4/ Nogo genes in cultured cells and zebrafish embryos. , Chen YC , Wu BK, Chu CY, Cheng CH, Han HW, Chen GD, Lee MT, Hwang PP, Kawakami K, Chang CC , Huang CJ., Nucleic Acids Res. August 1, 2010; 38 (14): 4635-50.
Wnt/beta-catenin signalling regulates cardiomyogenesis via GATA transcription factors. , Martin J, Afouda BA , Hoppler S ., J Anat. January 1, 2010; 216 (1): 92-107.
Comparative gene expression analysis and fate mapping studies suggest an early segregation of cardiogenic lineages in Xenopus laevis. , Gessert S, Kühl M ., Dev Biol. October 15, 2009; 334 (2): 395-408.
In vitro organogenesis from undifferentiated cells in Xenopus. , Asashima M , Ito Y , Chan T , Michiue T , Nakanishi M, Suzuki K, Hitachi K , Okabayashi K, Kondow A , Ariizumi T., Dev Dyn. June 1, 2009; 238 (6): 1309-20.
Wnt6 signaling regulates heart muscle development during organogenesis. , Lavery DL, Martin J, Turnbull YD, Hoppler S ., Dev Biol. November 15, 2008; 323 (2): 177-88.
Induction and modulation of smooth muscle differentiation in Xenopus embryonic cells. , Barillot W, Tréguer K, Faucheux C, Fédou S, Thézé N , Thiébaud P ., Dev Dyn. November 1, 2008; 237 (11): 3373-86.
GATA transcription factors integrate Wnt signalling during heart development. , Afouda BA , Martin J, Liu F, Ciau-Uitz A , Patient R , Hoppler S ., Development. October 1, 2008; 135 (19): 3185-90.
GATA4 and GATA5 are essential for heart and liver development in Xenopus embryos. , Haworth KE, Kotecha S , Mohun TJ , Latinkic BV ., BMC Dev Biol. July 28, 2008; 8 74.
Vertebrate CASTOR is required for differentiation of cardiac precursor cells at the ventral midline. , Christine KS , Conlon FL ., Dev Cell. April 1, 2008; 14 (4): 616-23.
The Gata5 target, TGIF2, defines the pancreatic region by modulating BMP signals within the endoderm. , Spagnoli FM , Brivanlou AH ., Development. February 1, 2008; 135 (3): 451-61.
Redundancy and evolution of GATA factor requirements in development of the myocardium. , Peterkin T, Gibson A, Patient R ., Dev Biol. November 15, 2007; 311 (2): 623-35.
Xenopus cDNA microarray identification of genes with endodermal organ expression. , Park EC , Hayata T, Cho KW , Han JK ., Dev Dyn. June 1, 2007; 236 (6): 1633-49.
Evolution of axis specification mechanisms in jawed vertebrates: insights from a chondrichthyan. , Coolen M, Sauka-Spengler T , Nicolle D, Le-Mentec C, Lallemand Y, Da Silva C, Plouhinec JL, Robert B, Wincker P, Shi DL , Mazan S., PLoS One. April 18, 2007; 2 (4): e374.
A role for GATA factors in Xenopus gastrulation movements. , Fletcher G, Jones GE, Patient R , Snape A., Mech Dev. October 1, 2006; 123 (10): 730-45.
Global analysis of the transcriptional network controlling Xenopus endoderm formation. , Sinner D , Kirilenko P, Rankin S , Rankin S , Wei E, Howard L, Kofron M , Heasman J , Woodland HR , Zorn AM ., Development. May 1, 2006; 133 (10): 1955-66.
Wnt5 signaling in vertebrate pancreas development. , Kim HJ , Schleiffarth JR, Jessurun J, Sumanas S, Petryk A, Lin S, Ekker SC ., BMC Biol. October 24, 2005; 3 23.
GATA4, 5 and 6 mediate TGFbeta maintenance of endodermal gene expression in Xenopus embryos. , Afouda BA , Ciau-Uitz A , Patient R ., Development. February 1, 2005; 132 (4): 763-74.
Sox17 and beta-catenin cooperate to regulate the transcription of endodermal genes. , Sinner D , Rankin S , Rankin S , Lee M, Zorn AM ., Development. July 1, 2004; 131 (13): 3069-80.
GATA-6 maintains BMP-4 and Nkx2 expression during cardiomyocyte precursor maturation. , Peterkin T, Gibson A, Patient R ., EMBO J. August 15, 2003; 22 (16): 4260-73.
Induction of cardiomyocytes by GATA4 in Xenopus ectodermal explants. , Latinkić BV, Kotecha S , Mohun TJ ., Development. August 1, 2003; 130 (16): 3865-76.