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Xenopus laevis FGF receptor substrate 3 (XFrs3) is important for eye development and mediates Pax6 expression in lens placode through its Shp2-binding sites. , Kim YJ, Bahn M, Kim YH, Shin JY, Cheong SW, Ju BG, Kim WS, Yeo CY., Dev Biol. January 1, 2015; 397 (1): 129-39.
E2a is necessary for Smad2/3-dependent transcription and the direct repression of lefty during gastrulation. , Wills AE , Baker JC ., Dev Cell. February 9, 2015; 32 (3): 345-57.
Temporally coordinated signals progressively pattern the anteroposterior and dorsoventral body axes. , Tuazon FB, Mullins MC., Semin Cell Dev Biol. June 1, 2015; 42 118-33.
Kdm2a/b Lysine Demethylases Regulate Canonical Wnt Signaling by Modulating the Stability of Nuclear β-Catenin. , Lu L, Gao Y, Zhang Z , Cao Q, Zhang X, Zou J, Cao Y ., Dev Cell. June 22, 2015; 33 (6): 660-74.
Small C-terminal Domain Phosphatase 3 Dephosphorylates the Linker Sites of Receptor-regulated Smads (R-Smads) to Ensure Transforming Growth Factor β (TGFβ)-mediated Germ Layer Induction in Xenopus Embryos. , Sun G , Hu Z, Min Z, Yan X, Guan Z, Su H, Fu Y, Ma X, Chen YG , Zhang MQ, Tao Q , Wu W., J Biol Chem. July 10, 2015; 290 (28): 17239-49.
Specification of anteroposterior axis by combinatorial signaling during Xenopus development. , Carron C, Shi DL ., Wiley Interdiscip Rev Dev Biol. January 1, 2016; 5 (2): 150-68.
Genomic integration of Wnt/ β-catenin and BMP/Smad1 signaling coordinates foregut and hindgut transcriptional programs. , Stevens ML , Chaturvedi P , Rankin SA , Rankin SA , Macdonald M, Jagannathan S, Yukawa M, Barski A, Zorn AM ., Development. April 1, 2017; 144 (7): 1283-1295.
Brg1 chromatin remodeling ATPase balances germ layer patterning by amplifying the transcriptional burst at midblastula transition. , Wagner G, Singhal N, Nicetto D, Straub T, Kremmer E, Rupp RAW ., PLoS Genet. May 12, 2017; 13 (5): e1006757.
A gene regulatory program controlling early Xenopus mesendoderm formation: Network conservation and motifs. , Charney RM , Paraiso KD , Blitz IL , Cho KWY., Semin Cell Dev Biol. June 1, 2017; 66 12-24.
Genome-wide analysis of dorsal and ventral transcriptomes of the Xenopus laevis gastrula. , Ding Y , Colozza G , Zhang K, Moriyama Y , Ploper D, Sosa EA, Benitez MDJ, De Robertis EM ., Dev Biol. June 15, 2017; 426 (2): 176-187.
Identification of new regulators of embryonic patterning and morphogenesis in Xenopus gastrulae by RNA sequencing. , Popov IK, Kwon T , Crossman DK, Crowley MR, Wallingford JB , Chang C ., Dev Biol. June 15, 2017; 426 (2): 429-441.
A catalog of Xenopus tropicalis transcription factors and their regional expression in the early gastrula stage embryo. , Blitz IL , Paraiso KD , Patrushev I , Chiu WTY , Cho KWY , Gilchrist MJ ., Dev Biol. June 15, 2017; 426 (2): 409-417.
Conservatism and variability of gene expression profiles among homeologous transcription factors in Xenopus laevis. , Watanabe M, Yasuoka Y , Mawaribuchi S, Kuretani A, Ito M, Kondo M, Ochi H , Ogino H , Fukui A , Taira M , Kinoshita T., Dev Biol. June 15, 2017; 426 (2): 301-324.
High variability of expression profiles of homeologous genes for Wnt, Hh, Notch, and Hippo signaling pathways in Xenopus laevis. , Michiue T , Yamamoto T , Yasuoka Y , Goto T , Ikeda T, Nagura K, Nakayama T , Taira M , Kinoshita T., Dev Biol. June 15, 2017; 426 (2): 270-290.
Lineage commitment of embryonic cells involves MEK1-dependent clearance of pluripotency regulator Ventx2. , Scerbo P , Marchal L, Kodjabachian L ., Elife. June 27, 2017; 6
RAPGEF5 Regulates Nuclear Translocation of β-Catenin. , Griffin JN, Del Viso F, Duncan AR, Robson A, Hwang W, Kulkarni S , Liu KJ , Liu KJ , Khokha MK ., Dev Cell. January 22, 2018; 44 (2): 248-260.e4.
ADMP controls the size of Spemann's organizer through a network of self-regulating expansion-restriction signals. , Leibovich A, Kot-Leibovich H, Ben-Zvi D, Fainsod A ., BMC Biol. January 22, 2018; 16 (1): 13.
Xbra and Smad-1 cooperate to activate the transcription of neural repressor ventx1.1 in Xenopus embryos. , Kumar S , Kumar S , Umair Z, Yoon J, Lee U, Kim SC, Park JB , Lee JY , Kim J ., Sci Rep. July 30, 2018; 8 (1): 11391.
Ventx1.1 as a Direct Repressor of Early Neural Gene zic3 in Xenopus laevis. , Umair Z, Kumar S , Kim DH, Rafiq K , Kumar V , Kim S, Park JB , Lee JY , Lee U, Kim J ., Mol Cells. December 31, 2018; 41 (12): 1061-1071.
Ventx1.1 competes with a transcriptional activator Xcad2 to regulate negatively its own expression. , Kumar S , Kumar S , Umair Z, Kumar V , Lee U, Choi SC, Kim J ., BMB Rep. June 1, 2019; 52 (6): 403-408.
The Spatiotemporal Control of Zygotic Genome Activation. , Gentsch GE , Owens NDL, Smith JC ., iScience. June 28, 2019; 16 485-498.
The secreted BMP antagonist ERFE is required for the development of a functional circulatory system in Xenopus. , Melchert J, Henningfeld KA , Richts S, Lingner T, Jonigk D, Pieler T ., Dev Biol. March 15, 2020; 459 (2): 138-148.
Foxd4l1.1 negatively regulates transcription of neural repressor ventx1.1 during neuroectoderm formation in Xenopus embryos. , Kumar S , Kumar S , Umair Z, Kumar V , Kumar S , Lee U, Kim J ., Sci Rep. October 8, 2020; 10 (1): 16780.
Dusp1 modulates activin/smad2 mediated germ layer specification via FGF signal inhibition in Xenopus embryos. , Umair Z, Kumar S , Rafiq K , Kumar V , Reman ZU, Lee SH, Kim S, Lee JY , Lee U, Kim J ., Anim Cells Syst (Seoul). November 27, 2020; 24 (6): 359-370.
Combinatorial transcription factor activities on open chromatin induce embryonic heterogeneity in vertebrates. , Bright AR, van Genesen S, Li Q , Grasso A, Frölich S, van der Sande M, van Heeringen SJ, Veenstra GJC ., EMBO J. May 3, 2021; 40 (9): e104913.
Rab7 is required for mesoderm patterning and gastrulation in Xenopus. , Kreis J, Wielath FM, Vick P ., Biol Open. July 15, 2021; 10 (7):
Goosecoid Controls Neuroectoderm Specification via Dual Circuits of Direct Repression and Indirect Stimulation in Xenopus Embryos. , Umair Z, Kumar V , Goutam RS, Kumar S , Kumar S , Lee U, Kim J ., Mol Cells. October 31, 2021; 44 (10): 723-735.
Reduced Retinoic Acid Signaling During Gastrulation Induces Developmental Microcephaly. , Gur M, Bendelac-Kapon L, Shabtai Y, Pillemer G, Fainsod A ., Front Cell Dev Biol. January 1, 2022; 10 844619.
Ventx Family and Its Functional Similarities with Nanog: Involvement in Embryonic Development and Cancer Progression. , Kumar S , Kumar S , Kumar V , Li W , Kim J ., Int J Mol Sci. March 1, 2022; 23 (5):
Bmp4 Synexpression Gene, Sizzled, Transcription Is Collectively Modulated by Smad1 and Ventx1.1/Ventx2.1 in Early Xenopus Embryos. , Rehman ZU , Tayyaba F, Lee U, Kim J ., Int J Mol Sci. November 1, 2022; 23 (21):
Membrane potential drives the exit from pluripotency and cell fate commitment via calcium and mTOR. , Sempou E, Kostiuk V, Zhu J, Cecilia Guerra M, Tyan L, Hwang W, Camacho-Aguilar E, Caplan MJ, Zenisek D, Warmflash A, Owens NDL, Khokha MK ., Nat Commun. November 5, 2022; 13 (1): 6681.
Two Homeobox Transcription Factors, Goosecoid and Ventx1.1, Oppositely Regulate Chordin Transcription in Xenopus Gastrula Embryos. , Kumar V , Umair Z, Lee U, Kim J ., Cells. March 11, 2023; 12 (6):
Transmembrane protein 150b attenuates BMP signaling in the Xenopus organizer. , Keum BR, Yeo I, Koo Y, Han W, Choi SC, Kim GH , Han JK ., J Cell Physiol. August 1, 2023; 238 (8): 1850-1866.
Cdx1 and Gsc distinctly regulate the transcription of BMP4 target gene ventx3.2 by directly binding to the proximal promoter region in Xenopus gastrulae. , Goutam RS, Kumar V , Lee U, Kim J ., Mol Cells. March 23, 2024; 47 (4): 100058.