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Differential nuclear import sets the timing of protein access to the embryonic genome. , Nguyen T, Costa EJ, Deibert T, Reyes J, Keber FC, Tomschik M , Stadlmeier M, Gupta M, Kumar CK, Cruz ER, Amodeo A , Gatlin JC , Wühr M ., Nat Commun. October 6, 2022; 13 (1): 5887.
Side projections of double-helical DNA: example of binding patterns of DNA in the complex with factor TFIIIA. , Chirgadze YN, Boshkova EA, Yakovlev AV, Ivanov VV., J Biomol Struct Dyn. October 1, 2019; 37 (17): 4433-4436.
In vitro chromatin templates to study nucleotide excision repair. , Liu X., DNA Repair (Amst). December 1, 2015; 36 68-76.
Small ubiquitin-like modifier (SUMO)-mediated repression of the Xenopus Oocyte 5 S rRNA genes. , Malik MQ, Bertke MM, Huber PW ., J Biol Chem. December 19, 2014; 289 (51): 35468-81.
Structure, function and regulation of Transcription Factor IIIA: From Xenopus to Arabidopsis. , Layat E, Probst AV, Tourmente S., Biochim Biophys Acta. January 1, 2013; 1829 (3-4): 274-82.
Zinc finger proteins and the 3D organization of chromosomes. , Feinauer CJ, Hofmann A, Goldt S, Liu L, Máté G, Heermann DW., Adv Protein Chem Struct Biol. January 1, 2013; 90 67-117.
Visualizing protein interactions involved in the formation of the 42S RNP storage particle of Xenopus oocytes. , Schneider H, Dabauvalle MC , Wilken N, Scheer U., Biol Cell. May 26, 2010; 102 (8): 469-78.
An RNA aptamer with high affinity and broad specificity for zinc finger proteins. , Weiss TC, Zhai GG, Bhatia SS, Romaniuk PJ., Biochemistry. March 30, 2010; 49 (12): 2732-40.
An RNA aptamer with high affinity and high specificity for the 5S RNA binding zinc finger proteins TFIIIA and p43. , Weiss TC, Zhai GG, Romaniuk PJ., Biochemistry. March 2, 2010; 49 (8): 1755-65.
The discovery of zinc fingers and their development for practical applications in gene regulation and genome manipulation. , Klug A., Q Rev Biophys. February 1, 2010; 43 (1): 1-21.
Mechanisms of inhibition of zinc-finger transcription factors by selenium compounds ebselen and selenite. , Larabee JL, Hocker JR, Hanas JS., J Inorg Biochem. March 1, 2009; 103 (3): 419-26.
Use of a reporter gene assay in yeast for genetic analysis of DNA-protein interactions. , Setzer DR , Schulman DB, Gunther CV, Bumbulis MJ., Methods Mol Biol. January 1, 2009; 543 219-41.
The human monocytic leukemia zinc finger histone acetyltransferase domain contains DNA-binding activity implicated in chromatin targeting. , Holbert MA, Sikorski T, Carten J, Snowflack D, Hodawadekar S, Marmorstein R., J Biol Chem. December 14, 2007; 282 (50): 36603-13.
Induced fit and "lock and key" recognition of 5S RNA by zinc fingers of transcription factor IIIA. , Lee BM, Xu J, Clarkson BK, Martinez-Yamout MA, Dyson HJ, Case DA, Gottesfeld JM, Wright PE., J Mol Biol. March 17, 2006; 357 (1): 275-91.
Mechanisms of aurothiomalate-Cys2His2 zinc finger interactions. , Larabee JL, Hocker JR, Hanas JS., Chem Res Toxicol. December 1, 2005; 18 (12): 1943-54.
A peroxisome proliferator response elements regulatory system in xenopus oocytes and its application. , Yan J, Fan CL, Wo XD, Gao LP., Chin Med J (Engl). August 20, 2005; 118 (16): 1362-7.
Mutations in TFIIIA that increase stability of the TFIIIA-5 S rRNA gene complex: unusual effects on the kinetics of complex assembly and dissociation. , Brady KL, Ponnampalam SN, Bumbulis MJ, Setzer DR ., J Biol Chem. July 22, 2005; 280 (29): 26743-50.
The core histone N-terminal tail domains negatively regulate binding of transcription factor IIIA to a nucleosome containing a 5S RNA gene via a novel mechanism. , Yang Z, Zheng C, Thiriet C, Hayes JJ., Mol Cell Biol. January 1, 2005; 25 (1): 241-9.
Zn-, Cd-, and Pb-transcription factor IIIA: properties, DNA binding, and comparison with TFIIIA-finger 3 metal complexes. , Huang M, Krepkiy D, Hu W , Petering DH., J Inorg Biochem. May 1, 2004; 98 (5): 775-85.
Signals and receptors for the nuclear transport of TFIIIA in Xenopus oocytes. , Wischnewski J, Rudt F, Pieler T ., Eur J Cell Biol. March 1, 2004; 83 (2): 55-66.
Restricted specificity of Xenopus TFIIIA for transcription of somatic 5S rRNA genes. , Ghose R, Malik M, Huber PW ., Mol Cell Biol. March 1, 2004; 24 (6): 2467-77.
Structural features of transcription factor IIIA bound to a nucleosome in solution. , Vitolo JM, Yang Z, Basavappa R, Hayes JJ., Mol Cell Biol. January 1, 2004; 24 (2): 697-707.
Binding of zinc finger protein transcription factor IIIA to its cognate DNA sequence with single UV photoproducts at specific sites and its effect on DNA repair. , Kwon Y, Smerdon MJ., J Biol Chem. November 14, 2003; 278 (46): 45451-9.
Crystal structure of a zinc-finger-RNA complex reveals two modes of molecular recognition. , Lu D, Searles MA, Klug A., Nature. November 6, 2003; 426 (6962): 96-100.
Isolation of the B3 transcription factor of the Xenopus TFIIIA gene. , Griffin D, Penberthy WT, Lum H, Stein RW, Taylor WL ., Gene. August 14, 2003; 313 179-88.
Cobalt-substituted zinc finger 3 of transcription factor IIIA: interactions with cognate DNA detected by (31)P ENDOR spectroscopy. , Walsby CJ, Krepkiy D, Petering DH, Hoffman BM., J Am Chem Soc. June 25, 2003; 125 (25): 7502-3.
Xenopus transcription factor IIIA and the 5S nucleosome: development of a useful in vitro system. , Yang Z, Hayes JJ., Biochem Cell Biol. June 1, 2003; 81 (3): 177-84.
VgRBP71 stimulates cleavage at a polyadenylation signal in Vg1 mRNA, resulting in the removal of a cis-acting element that represses translation. , Kolev NG, Huber PW ., Mol Cell. March 1, 2003; 11 (3): 745-55.
The Xenopus B2 factor involved in TFIIIA gene regulation is closely related to Sp1 and interacts in a complex with USF. , Penberthy WT, Griffin D, Hall RK, Taylor WL ., Gene. February 27, 2003; 305 (2): 205-15.
Inhibition of zinc finger protein-DNA interactions by sodium selenite. , Larabee JL, Hocker JR, Hanas RJ, Kahn FM, Hanas JS., Biochem Pharmacol. December 15, 2002; 64 (12): 1757-65.
A homolog of FBP2/ KSRP binds to localized mRNAs in Xenopus oocytes. , Kroll TT , Zhao WM , Jiang C, Huber PW ., Development. December 1, 2002; 129 (24): 5609-19.
Having it both ways: transcription factors that bind DNA and RNA. , Cassiday LA, Maher LJ., Nucleic Acids Res. October 1, 2002; 30 (19): 4118-26.
Additivity of interactions of zinc finger motifs in specific recognition of RNA. , Giel-Pietraszuk M, Barciszewska MZ., J Biochem. April 1, 2002; 131 (4): 571-8.
Phosphorylation of Xenopus transcription factor IIIA by an oocyte protein kinase CK2. , Westmark CJ, Ghose R, Huber PW ., Biochem J. March 1, 2002; 362 (Pt 2): 375-82.
DNA methylation at promoter regions regulates the timing of gene activation in Xenopus laevis embryos. , Stancheva I , El-Maarri O, Walter J, Niveleau A, Meehan RR ., Dev Biol. March 1, 2002; 243 (1): 155-65.
cDNA cloning, DNA binding, and evolution of mammalian transcription factor IIIA. , Hanas JS, Hocker JR, Cheng YG, Lerner MR, Brackett DJ, Lightfoot SA, Hanas RJ, Madhusudhan KT, Moreland RJ., Gene. January 9, 2002; 282 (1-2): 43-52.
Mercuric ion inhibition of eukaryotic transcription factor binding to DNA. , Rodgers JS, Hocker JR, Hanas RJ, Nwosu EC, Hanas JS., Biochem Pharmacol. June 15, 2001; 61 (12): 1543-50.
Contribution of individual amino acids to the nucleic acid binding activities of the Xenopus zinc finger proteins TFIIIIA and p43. , Hamilton TB, Turner J, Barilla K, Romaniuk PJ., Biochemistry. May 22, 2001; 40 (20): 6093-101.
Design of polyzinc finger peptides with structured linkers. , Moore M, Choo Y, Klug A., Proc Natl Acad Sci U S A. February 13, 2001; 98 (4): 1432-6.
The third zinc finger of TFIIIA stabilizes a hairpin structure of the non-coding strand in the internal control region of 5S RNA gene. , Miura T, Okada A, Kaneta M, Urayama Y, Takeuchi H., J Inorg Biochem. November 1, 2000; 82 (1-4): 207-13.
The role of the central zinc fingers of transcription factor IIIA in binding to 5 S RNA. , Searles MA, Lu D, Klug A., J Mol Biol. August 4, 2000; 301 (1): 47-60.
Identification of a transcription factor IIIA-interacting protein. , Moreland RJ, Dresser ME, Rodgers JS, Roe BA, Conaway JW, Conaway RC, Hanas JS., Nucleic Acids Res. May 1, 2000; 28 (9): 1986-93.
The H3-H4 N-terminal tail domains are the primary mediators of transcription factor IIIA access to 5S DNA within a nucleosome. , Vitolo JM, Thiriet C, Hayes JJ., Mol Cell Biol. March 1, 2000; 20 (6): 2167-75.
Cadmium and lead interactions with transcription factor IIIA from Xenopus laevis: a model for zinc finger protein reactions with toxic metal ions and metallothionein. , Petering DH, Huang M, Moteki S, Shaw CF., Mar Environ Res. January 1, 2000; 50 (1-5): 89-92.
Energetics of the specific binding interaction of the first three zinc fingers of the transcription factor TFIIIA with its cognate DNA sequence. , Liggins JR, Privalov PL., Proteins. January 1, 2000; Suppl 4 50-62.
Assembly of the nuclear transcription and processing machinery: Cajal bodies (coiled bodies) and transcriptosomes. , Gall JG , Bellini M , Wu Z, Murphy C., Mol Biol Cell. December 1, 1999; 10 (12): 4385-402.
A feedback loop coupling 5 S rRNA synthesis to accumulation of a ribosomal protein. , Pittman RH, Andrews MT, Setzer DR ., J Biol Chem. November 19, 1999; 274 (47): 33198-201.
Lead inhibition of DNA-binding mechanism of Cys(2)His(2) zinc finger proteins. , Hanas JS, Rodgers JS, Bantle JA, Cheng YG., Mol Pharmacol. November 1, 1999; 56 (5): 982-8.
Nuclear export in plants. Use of geminivirus movement proteins for a cell-based export assay. , Ward BM, Lazarowitz SG., Plant Cell. July 1, 1999; 11 (7): 1267-76.
How do linker histones mediate differential gene expression? , Crane-Robinson C., Bioessays. May 1, 1999; 21 (5): 367-71.