Robert M. Grainger - Publications

Publications (89)

XB-PERS-562

Publications By Robert M. Grainger

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Erratum: Best Practices for Xenopus tropicalis Husbandry., Nakayama T, Grainger RM., Cold Spring Harb Protoc. July 5, 2023; 2023 (7): pdb.err108386.
Preparation of Intact Nuclei for Single-Nucleus Omics Using Frozen Cell Suspensions from Mutant Embryos of Xenopus tropicalis., Nakayama T, Roubroeks JAY, Veenstra GJC, Grainger RM., Cold Spring Harb Protoc. December 1, 2022; 2022 (12): 641-652.
Gynogenetic Production of Embryos in Xenopus tropicalis Using a Cold Shock Procedure: Rapid Screening Method for Gene Editing Phenotypes., Nakayama T, Cox A, Howell M, Grainger RM., Cold Spring Harb Protoc. December 1, 2022; 2022 (12): 616-623.
Homology-Directed Repair by CRISPR-Cas9 Mutagenesis in Xenopus Using Long Single-Stranded Donor DNA Templates via Simple Microinjection of Embryos., Nakayama T, Grainger RM, Cha SW., Cold Spring Harb Protoc. December 1, 2022; 2022 (12): 606-615.
Best Practices for Xenopus tropicalis Husbandry., Nakayama T, Grainger RM., Cold Spring Harb Protoc. October 25, 2022;
Genetics and Gene Editing Methods in Xenopus laevis and Xenopus tropicalis., Guille M, Grainger R., Cold Spring Harb Protoc. October 25, 2022;
Production of Transgenic F0 Animals and Permanent Lines by Sperm Nuclear Transplantation in Xenopus tropicalis., Nakayama T, Gray J, Grainger RM., Cold Spring Harb Protoc. October 25, 2022;
Modeling Human Genetic Disorders with CRISPR Technologies in Xenopus., Willsey HR, Guille M, Grainger RM., Cold Spring Harb Protoc. March 1, 2022; 2022 (3):
Elucidating the framework for specification and determination of the embryonic retina., Louie SH, Fisher M, Grainger RM., Exp Cell Res. December 15, 2020; 397 (2): 112316.
Simple embryo injection of long single-stranded donor templates with the CRISPR/Cas9 system leads to homology-directed repair in Xenopus tropicalis and Xenopus laevis., Nakayama T, Grainger RM, Cha SW., Genesis. June 1, 2020; 58 (6): e23366.
Special Considerations for Making Explants and Transplants with Xenopus tropicalis., Fisher M, Grainger RM., Cold Spring Harb Protoc. June 3, 2019; 2019 (6):
no privacy, a Xenopus tropicalis mutant, is a model of human Hermansky-Pudlak Syndrome and allows visualization of internal organogenesis during tadpole development., Nakayama T, Nakajima K, Cox A, Fisher M, Howell M, Fish MB, Yaoita Y, Grainger RM., Dev Biol. June 15, 2017; 426 (2): 472-486.
Functional Cloning Using a Xenopus Oocyte Expression System., Plautz CZ, Williams HC, Grainger RM., J Vis Exp. January 30, 2016; (107): e53518.
Xenopus pax6 mutants affect eye development and other organ systems, and have phenotypic similarities to human aniridia patients., Nakayama T, Fisher M, Nakajima K, Odeleye AO, Zimmerman KB, Fish MB, Yaoita Y, Chojnowski JL, Lauderdale JD, Netland PA, Grainger RM., Dev Biol. December 15, 2015; 408 (2): 328-44.
Early stages of induction of anterior head ectodermal properties in Xenopus embryos are mediated by transcriptional cofactor ldb1., Plautz CZ, Zirkle BE, Deshotel MJ, Grainger RM., Dev Dyn. December 1, 2014; 243 (12): 1606-18.
Xenopus mutant reveals necessity of rax for specifying the eye field which otherwise forms tissue with telencephalic and diencephalic character., Fish MB, Nakayama T, Fisher M, Hirsch N, Cox A, Reeder R, Carruthers S, Hall A, Stemple DL, Grainger RM., Dev Biol. November 15, 2014; 395 (2): 317-330.
Cas9-based genome editing in Xenopus tropicalis., Nakayama T, Blitz IL, Fish MB, Odeleye AO, Manohar S, Cho KW, Grainger RM., Methods Enzymol. January 1, 2014; 546 355-75.
Simple and efficient CRISPR/Cas9-mediated targeted mutagenesis in Xenopus tropicalis., Nakayama T, Fish MB, Fisher M, Oomen-Hajagos J, Thomsen GH, Grainger RM., Genesis. December 1, 2013; 51 (12): 835-43.
Defining progressive stages in the commitment process leading to embryonic lens formation., Jin H, Fisher M, Grainger RM., Genesis. October 1, 2012; 50 (10): 728-40.
Simple, fast, tissue-specific bacterial artificial chromosome transgenesis in Xenopus., Fish MB, Nakayama T, Grainger RM., Genesis. March 1, 2012; 50 (3): 307-15.
Roles of ADAM13-regulated Wnt activity in early Xenopus eye development., Wei S, Xu G, Bridges LC, Williams P, Nakayama T, Shah A, Grainger RM, White JM, DeSimone DW., Dev Biol. March 1, 2012; 363 (1): 147-54.
Development of Xenopus resource centers: the National Xenopus Resource and the European Xenopus Resource Center., Pearl EJ, Grainger RM, Guille M, Horb ME., Genesis. March 1, 2012; 50 (3): 155-63.
Isolation of DNA from red blood cells in Xenopus., Sive HL, Grainger RM, Harland RM., Cold Spring Harb Protoc. January 1, 2012; 2012 (1): 129-32.
Comparative genomics-based identification and analysis of cis-regulatory elements., Ogino H, Ochi H, Uchiyama C, Louie S, Grainger RM., Methods Mol Biol. January 1, 2012; 917 245-63.
Xenopus tropicalis as a model organism for genetics and genomics: past, present, and future., Grainger RM., Methods Mol Biol. January 1, 2012; 917 3-15.
Xenopus research: metamorphosed by genetics and genomics., Harland RM, Grainger RM., Trends Genet. December 1, 2011; 27 (12): 507-15.
Microinjection of RNA and preparation of secreted proteins from Xenopus oocytes., Sive HL, Grainger RM, Harland RM., Cold Spring Harb Protoc. December 1, 2010; 2010 (12): pdb.prot5538.
Calibration of the injection volume for microinjection of Xenopus oocytes and embryos., Sive HL, Grainger RM, Harland RM., Cold Spring Harb Protoc. December 1, 2010; 2010 (12): pdb.prot5537.
Microinjection of Xenopus oocytes., Sive HL, Grainger RM, Harland RM., Cold Spring Harb Protoc. December 1, 2010; 2010 (12): pdb.prot5536.
Defolliculation of Xenopus oocytes., Sive HL, Grainger RM, Harland RM., Cold Spring Harb Protoc. December 1, 2010; 2010 (12): pdb.prot5535.
Isolation of Xenopus oocytes., Sive HL, Grainger RM, Harland RM., Cold Spring Harb Protoc. December 1, 2010; 2010 (12): pdb.prot5534.
Microinjection of Xenopus embryos., Sive HL, Grainger RM, Harland RM., Cold Spring Harb Protoc. December 1, 2010; 2010 (12): pdb.ip81.
The genome of the Western clawed frog Xenopus tropicalis., Hellsten U, Harland RM, Gilchrist MJ, Hendrix D, Jurka J, Kapitonov V, Ovcharenko I, Putnam NH, Shu S, Taher L, Blitz IL, Blumberg B, Dichmann DS, Dubchak I, Amaya E, Detter JC, Fletcher R, Gerhard DS, Goodstein D, Graves T, Grigoriev IV, Grimwood J, Kawashima T, Lindquist E, Lucas SM, Mead PE, Mitros T, Ogino H, Ohta Y, Poliakov AV, Pollet N, Robert J, Salamov A, Sater AK, Schmutz J, Terry A, Vize PD, Warren WC, Wells D, Wills A, Wilson RK, Zimmerman LB, Zorn AM, Grainger R, Grammer T, Khokha MK, Richardson PM, Rokhsar DS., Science. April 30, 2010; 328 (5978): 633-6.
Convergence of a head-field selector Otx2 and Notch signaling: a mechanism for lens specification., Ogino H, Fisher M, Grainger RM., Development. January 1, 2008; 135 (2): 249-58.
Wnt/beta-catenin signaling has an essential role in the initiation of limb regeneration., Yokoyama H, Ogino H, Stoick-Cooper CL, Grainger RM, Moon RT., Dev Biol. June 1, 2007; 306 (1): 170-8.
Microdissection: Explant and Transplant Assays in Xenopus laevis., Sive HL, Grainger RM, Harland RM., CSH Protoc. June 1, 2007; 2007 pdb.top10.
Cortical Isolation from Xenopus laevis Oocytes and Eggs., Sive HL, Grainger RM, Harland RM., CSH Protoc. June 1, 2007; 2007 pdb.prot4753.
Dissection of Tightly Adhering Xenopus laevis Tissues by Trypsin Treatment., Sive HL, Grainger RM, Harland RM., CSH Protoc. June 1, 2007; 2007 pdb.prot4752.
Transplantation of Xenopus laevis Lens Ectoderm., Sive HL, Grainger RM, Harland RM., CSH Protoc. June 1, 2007; 2007 pdb.prot4751.
Xenopus laevis Einstecks., Sive HL, Grainger RM, Harland RM., CSH Protoc. June 1, 2007; 2007 pdb.prot4750.
Xenopus laevis Keller Explants., Sive HL, Grainger RM, Harland RM., CSH Protoc. June 1, 2007; 2007 pdb.prot4749.
Xenopus laevis Animal Cap/Dorsal Mesoderm Conjugates., Sive HL, Grainger RM, Harland RM., CSH Protoc. June 1, 2007; 2007 pdb.prot4748.
Xenopus laevis Animal Cap/Vegetal Endoderm Conjugates., Sive HL, Grainger RM, Harland RM., CSH Protoc. June 1, 2007; 2007 pdb.prot4747.
Ectodermal (Animal Cap) Layer Separations in Xenopus laevis., Sive HL, Grainger RM, Harland RM., CSH Protoc. June 1, 2007; 2007 pdb.prot4746.
Dissociation and Reaggregation of Xenopus laevis Animal Caps., Sive HL, Grainger RM, Harland RM., CSH Protoc. June 1, 2007; 2007 pdb.prot4745.
Animal Cap Isolation from Xenopus laevis., Sive HL, Grainger RM, Harland RM., CSH Protoc. June 1, 2007; 2007 pdb.prot4744.
Housing and Feeding of Xenopus laevis., Sive HL, Grainger RM, Harland RM., CSH Protoc. May 1, 2007; 2007 pdb.top8.
Xenopus laevis In Vitro Fertilization and Natural Mating Methods., Sive HL, Grainger RM, Harland RM., CSH Protoc. May 1, 2007; 2007 pdb.prot4737.
Xenopus laevis Egg Collection., Sive HL, Grainger RM, Harland RM., CSH Protoc. May 1, 2007; 2007 pdb.prot4736.
Isolating Xenopus laevis Testes., Sive HL, Grainger RM, Harland RM., CSH Protoc. May 1, 2007; 2007 pdb.prot4735.

Erratum: Best Practices for Xenopus tropicalis Husbandry., Nakayama T, Grainger RM., Cold Spring Harb Protoc. July 5, 2023; 2023 (7): pdb.err108386.

Preparation of Intact Nuclei for Single-Nucleus Omics Using Frozen Cell Suspensions from Mutant Embryos of Xenopus tropicalis., Nakayama T, Roubroeks JAY, Veenstra GJC, Grainger RM., Cold Spring Harb Protoc. December 1, 2022; 2022 (12): 641-652.

Gynogenetic Production of Embryos in Xenopus tropicalis Using a Cold Shock Procedure: Rapid Screening Method for Gene Editing Phenotypes., Nakayama T, Cox A, Howell M, Grainger RM., Cold Spring Harb Protoc. December 1, 2022; 2022 (12): 616-623.

Homology-Directed Repair by CRISPR-Cas9 Mutagenesis in Xenopus Using Long Single-Stranded Donor DNA Templates via Simple Microinjection of Embryos., Nakayama T, Grainger RM, Cha SW., Cold Spring Harb Protoc. December 1, 2022; 2022 (12): 606-615.

Best Practices for Xenopus tropicalis Husbandry., Nakayama T, Grainger RM., Cold Spring Harb Protoc. October 25, 2022;

Genetics and Gene Editing Methods in Xenopus laevis and Xenopus tropicalis., Guille M, Grainger R., Cold Spring Harb Protoc. October 25, 2022;

Production of Transgenic F0 Animals and Permanent Lines by Sperm Nuclear Transplantation in Xenopus tropicalis., Nakayama T, Gray J, Grainger RM., Cold Spring Harb Protoc. October 25, 2022;

Modeling Human Genetic Disorders with CRISPR Technologies in Xenopus., Willsey HR, Guille M, Grainger RM., Cold Spring Harb Protoc. March 1, 2022; 2022 (3):

Elucidating the framework for specification and determination of the embryonic retina., Louie SH, Fisher M, Grainger RM., Exp Cell Res. December 15, 2020; 397 (2): 112316.

Simple embryo injection of long single-stranded donor templates with the CRISPR/Cas9 system leads to homology-directed repair in Xenopus tropicalis and Xenopus laevis., Nakayama T, Grainger RM, Cha SW., Genesis. June 1, 2020; 58 (6): e23366.

Special Considerations for Making Explants and Transplants with Xenopus tropicalis., Fisher M, Grainger RM., Cold Spring Harb Protoc. June 3, 2019; 2019 (6):

no privacy, a Xenopus tropicalis mutant, is a model of human Hermansky-Pudlak Syndrome and allows visualization of internal organogenesis during tadpole development., Nakayama T, Nakajima K, Cox A, Fisher M, Howell M, Fish MB, Yaoita Y, Grainger RM., Dev Biol. June 15, 2017; 426 (2): 472-486.

Functional Cloning Using a Xenopus Oocyte Expression System., Plautz CZ, Williams HC, Grainger RM., J Vis Exp. January 30, 2016; (107): e53518.

Xenopus pax6 mutants affect eye development and other organ systems, and have phenotypic similarities to human aniridia patients., Nakayama T, Fisher M, Nakajima K, Odeleye AO, Zimmerman KB, Fish MB, Yaoita Y, Chojnowski JL, Lauderdale JD, Netland PA, Grainger RM., Dev Biol. December 15, 2015; 408 (2): 328-44.

Early stages of induction of anterior head ectodermal properties in Xenopus embryos are mediated by transcriptional cofactor ldb1., Plautz CZ, Zirkle BE, Deshotel MJ, Grainger RM., Dev Dyn. December 1, 2014; 243 (12): 1606-18.

Xenopus mutant reveals necessity of rax for specifying the eye field which otherwise forms tissue with telencephalic and diencephalic character., Fish MB, Nakayama T, Fisher M, Hirsch N, Cox A, Reeder R, Carruthers S, Hall A, Stemple DL, Grainger RM., Dev Biol. November 15, 2014; 395 (2): 317-330.

Cas9-based genome editing in Xenopus tropicalis., Nakayama T, Blitz IL, Fish MB, Odeleye AO, Manohar S, Cho KW, Grainger RM., Methods Enzymol. January 1, 2014; 546 355-75.

Simple and efficient CRISPR/Cas9-mediated targeted mutagenesis in Xenopus tropicalis., Nakayama T, Fish MB, Fisher M, Oomen-Hajagos J, Thomsen GH, Grainger RM., Genesis. December 1, 2013; 51 (12): 835-43.

Defining progressive stages in the commitment process leading to embryonic lens formation., Jin H, Fisher M, Grainger RM., Genesis. October 1, 2012; 50 (10): 728-40.

Simple, fast, tissue-specific bacterial artificial chromosome transgenesis in Xenopus., Fish MB, Nakayama T, Grainger RM., Genesis. March 1, 2012; 50 (3): 307-15.

Roles of ADAM13-regulated Wnt activity in early Xenopus eye development., Wei S, Xu G, Bridges LC, Williams P, Nakayama T, Shah A, Grainger RM, White JM, DeSimone DW., Dev Biol. March 1, 2012; 363 (1): 147-54.

Development of Xenopus resource centers: the National Xenopus Resource and the European Xenopus Resource Center., Pearl EJ, Grainger RM, Guille M, Horb ME., Genesis. March 1, 2012; 50 (3): 155-63.

Isolation of DNA from red blood cells in Xenopus., Sive HL, Grainger RM, Harland RM., Cold Spring Harb Protoc. January 1, 2012; 2012 (1): 129-32.

Comparative genomics-based identification and analysis of cis-regulatory elements., Ogino H, Ochi H, Uchiyama C, Louie S, Grainger RM., Methods Mol Biol. January 1, 2012; 917 245-63.

Xenopus tropicalis as a model organism for genetics and genomics: past, present, and future., Grainger RM., Methods Mol Biol. January 1, 2012; 917 3-15.

Xenopus research: metamorphosed by genetics and genomics., Harland RM, Grainger RM., Trends Genet. December 1, 2011; 27 (12): 507-15.

Microinjection of RNA and preparation of secreted proteins from Xenopus oocytes., Sive HL, Grainger RM, Harland RM., Cold Spring Harb Protoc. December 1, 2010; 2010 (12): pdb.prot5538.

Calibration of the injection volume for microinjection of Xenopus oocytes and embryos., Sive HL, Grainger RM, Harland RM., Cold Spring Harb Protoc. December 1, 2010; 2010 (12): pdb.prot5537.

Microinjection of Xenopus oocytes., Sive HL, Grainger RM, Harland RM., Cold Spring Harb Protoc. December 1, 2010; 2010 (12): pdb.prot5536.

Defolliculation of Xenopus oocytes., Sive HL, Grainger RM, Harland RM., Cold Spring Harb Protoc. December 1, 2010; 2010 (12): pdb.prot5535.

Isolation of Xenopus oocytes., Sive HL, Grainger RM, Harland RM., Cold Spring Harb Protoc. December 1, 2010; 2010 (12): pdb.prot5534.

Microinjection of Xenopus embryos., Sive HL, Grainger RM, Harland RM., Cold Spring Harb Protoc. December 1, 2010; 2010 (12): pdb.ip81.

The genome of the Western clawed frog Xenopus tropicalis., Hellsten U, Harland RM, Gilchrist MJ, Hendrix D, Jurka J, Kapitonov V, Ovcharenko I, Putnam NH, Shu S, Taher L, Blitz IL, Blumberg B, Dichmann DS, Dubchak I, Amaya E, Detter JC, Fletcher R, Gerhard DS, Goodstein D, Graves T, Grigoriev IV, Grimwood J, Kawashima T, Lindquist E, Lucas SM, Mead PE, Mitros T, Ogino H, Ohta Y, Poliakov AV, Pollet N, Robert J, Salamov A, Sater AK, Schmutz J, Terry A, Vize PD, Warren WC, Wells D, Wills A, Wilson RK, Zimmerman LB, Zorn AM, Grainger R, Grammer T, Khokha MK, Richardson PM, Rokhsar DS., Science. April 30, 2010; 328 (5978): 633-6.

Convergence of a head-field selector Otx2 and Notch signaling: a mechanism for lens specification., Ogino H, Fisher M, Grainger RM., Development. January 1, 2008; 135 (2): 249-58.

Wnt/beta-catenin signaling has an essential role in the initiation of limb regeneration., Yokoyama H, Ogino H, Stoick-Cooper CL, Grainger RM, Moon RT., Dev Biol. June 1, 2007; 306 (1): 170-8.

Microdissection: Explant and Transplant Assays in Xenopus laevis., Sive HL, Grainger RM, Harland RM., CSH Protoc. June 1, 2007; 2007 pdb.top10.

Cortical Isolation from Xenopus laevis Oocytes and Eggs., Sive HL, Grainger RM, Harland RM., CSH Protoc. June 1, 2007; 2007 pdb.prot4753.

Dissection of Tightly Adhering Xenopus laevis Tissues by Trypsin Treatment., Sive HL, Grainger RM, Harland RM., CSH Protoc. June 1, 2007; 2007 pdb.prot4752.

Transplantation of Xenopus laevis Lens Ectoderm., Sive HL, Grainger RM, Harland RM., CSH Protoc. June 1, 2007; 2007 pdb.prot4751.

Xenopus laevis Einstecks., Sive HL, Grainger RM, Harland RM., CSH Protoc. June 1, 2007; 2007 pdb.prot4750.

Xenopus laevis Keller Explants., Sive HL, Grainger RM, Harland RM., CSH Protoc. June 1, 2007; 2007 pdb.prot4749.

Xenopus laevis Animal Cap/Dorsal Mesoderm Conjugates., Sive HL, Grainger RM, Harland RM., CSH Protoc. June 1, 2007; 2007 pdb.prot4748.

Xenopus laevis Animal Cap/Vegetal Endoderm Conjugates., Sive HL, Grainger RM, Harland RM., CSH Protoc. June 1, 2007; 2007 pdb.prot4747.

Ectodermal (Animal Cap) Layer Separations in Xenopus laevis., Sive HL, Grainger RM, Harland RM., CSH Protoc. June 1, 2007; 2007 pdb.prot4746.

Dissociation and Reaggregation of Xenopus laevis Animal Caps., Sive HL, Grainger RM, Harland RM., CSH Protoc. June 1, 2007; 2007 pdb.prot4745.

Animal Cap Isolation from Xenopus laevis., Sive HL, Grainger RM, Harland RM., CSH Protoc. June 1, 2007; 2007 pdb.prot4744.

Housing and Feeding of Xenopus laevis., Sive HL, Grainger RM, Harland RM., CSH Protoc. May 1, 2007; 2007 pdb.top8.

Xenopus laevis In Vitro Fertilization and Natural Mating Methods., Sive HL, Grainger RM, Harland RM., CSH Protoc. May 1, 2007; 2007 pdb.prot4737.

Xenopus laevis Egg Collection., Sive HL, Grainger RM, Harland RM., CSH Protoc. May 1, 2007; 2007 pdb.prot4736.

Isolating Xenopus laevis Testes., Sive HL, Grainger RM, Harland RM., CSH Protoc. May 1, 2007; 2007 pdb.prot4735.

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