Peter Nemes - Publications

Publications (34)

XB-PERS-3111

Publications By Peter Nemes

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Cell lineage-guided mass spectrometry reveals increased energy metabolism and reactive oxygen species in the vertebrate organizer., Baxi AB, Li J, Quach VM, Pade LR, Moody SA, Nemes P., Proc Natl Acad Sci U S A. February 6, 2024; 121 (6): e2311625121.
Dilute to Enrich for Deeper Proteomics: A Yolk-Depleted Carrier for Limited Populations of Embryonic (Frog) Cells., Pade LR, Lombard-Banek C, Li J, Nemes P., J Proteome Res. February 2, 2024; 23 (2): 692-703.
Time-resolved quantitative proteomic analysis of the developing Xenopus otic vesicle reveals putative congenital hearing loss candidates., Baxi AB, Nemes P, Moody SA., iScience. September 15, 2023; 26 (9): 107665.
Cell-Lineage Guided Mass Spectrometry Proteomics in the Developing (Frog) Embryo., Baxi AB, Pade LR, Nemes P., J Vis Exp. April 21, 2022; (182):
Capillary Electrophoresis Mass Spectrometry for Scalable Single-Cell Proteomics., Shen B, Pade LR, Choi SB, Muñoz-LLancao P, Manzini MC, Nemes P., Front Chem. January 1, 2022; 10 863979.
Single-Cell Mass Spectrometry of Metabolites and Proteins for Systems and Functional Biology., Portero EP, Pade L, Li J, Choi SB, Nemes P., Neuromethods. January 1, 2022; 184 87-114.
*In Vivo Subcellular Mass Spectrometry Enables Proteo-Metabolomic Single-Cell Systems Biology in a Chordate Embryo Developing to a Normally Behaving Tadpole (X. laevis).*, Lombard-Banek C, Li J, Portero EP, Onjiko RM, Singer CD, Plotnick DO, Al Shabeeb RQ, Nemes P., Angew Chem Int Ed Engl. June 1, 2021; 60 (23): 12852-12858.*
Altering metabolite distribution at Xenopus cleavage stages affects left-right gene expression asymmetries., Onjiko RM, Nemes P, Moody SA., Genesis. June 1, 2021; 59 (5-6): e23418.
Mass spectrometry based proteomics for developmental neurobiology in the amphibian Xenopus laevis., Baxi AB, Pade LR, Nemes P., Curr Top Dev Biol. January 1, 2021; 145 205-231.
Trace, Machine Learning of Signal Images for Trace-Sensitive Mass Spectrometry: A Case Study from Single-Cell Metabolomics., Liu Z, Portero EP, Jian Y, Zhao Y, Onjiko RM, Zeng C, Nemes P., Anal Chem. May 7, 2019; 91 (9): 5768-5776.
Microsampling Capillary Electrophoresis Mass Spectrometry Enables Single-Cell Proteomics in Complex Tissues: Developing Cell Clones in Live Xenopus laevis and Zebrafish Embryos., Lombard-Banek C, Moody SA, Manzini MC, Nemes P., Anal Chem. April 2, 2019; 91 (7): 4797-4805.
Dual cationic-anionic profiling of metabolites in a single identified cell in a live Xenopus laevis embryo by microprobe CE-ESI-MS., Portero EP, Nemes P., Analyst. January 28, 2019; 144 (3): 892-900.
Single-cell proteomics in complex tissues using microprobe capillary electrophoresis mass spectrometry., Lombard-Banek C, Choi SB, Nemes P., Methods Enzymol. January 1, 2019; 628 263-292.
Proteomic Characterization of the Neural Ectoderm Fated Cell Clones in the Xenopus laevis Embryo by High-Resolution Mass Spectrometry., Baxi AB, Lombard-Banek C, Moody SA, Nemes P., ACS Chem Neurosci. August 15, 2018; 9 (8): 2064-2073.
Microprobe Capillary Electrophoresis Mass Spectrometry for Single-cell Metabolomics in Live Frog (Xenopus laevis) Embryos., Onjiko RM, Portero EP, Moody SA, Nemes P., J Vis Exp. December 22, 2017; (130):
Metabolic Comparison of Dorsal versus Ventral Cells Directly in the Live 8-cell Frog Embryo by Microprobe Single-cell CE-ESI-MS., Onjiko RM, Plotnick DO, Moody SA, Nemes P., Anal Methods. September 14, 2017; 9 (34): 4964-4970.
In Situ Microprobe Single-Cell Capillary Electrophoresis Mass Spectrometry: Metabolic Reorganization in Single Differentiating Cells in the Live Vertebrate (Xenopus laevis) Embryo., Onjiko RM, Portero EP, Moody SA, Nemes P., Anal Chem. July 5, 2017; 89 (13): 7069-7076.
New-generation mass spectrometry expands the toolbox of cell and developmental biology., Lombard-Banek C, Portero EP, Onjiko RM, Nemes P., Genesis. January 1, 2017; 55 (1-2):
Label-free Quantification of Proteins in Single Embryonic Cells with Neural Fate in the Cleavage-Stage Frog (Xenopus laevis) Embryo using Capillary Electrophoresis Electrospray Ionization High-Resolution Mass Spectrometry (CE-ESI-HRMS)., Lombard-Banek C, Reddy S, Moody SA, Nemes P., Mol Cell Proteomics. August 1, 2016; 15 (8): 2756-68.
High-Sensitivity Mass Spectrometry for Probing Gene Translation in Single Embryonic Cells in the Early Frog (Xenopus) Embryo., Lombard-Banek C, Moody SA, Nemes P., Front Cell Dev Biol. June 24, 2016; 4 100.
Single-cell mass spectrometry with multi-solvent extraction identifies metabolic differences between left and right blastomeres in the 8-cell frog (Xenopus) embryo., Onjiko RM, Morris SE, Moody SA, Nemes P., Analyst. June 21, 2016; 141 (12): 3648-56.
Single-Cell Mass Spectrometry for Discovery Proteomics: Quantifying Translational Cell Heterogeneity in the 16-Cell Frog (Xenopus) Embryo., Lombard-Banek C, Moody SA, Nemes P., Angew Chem Int Ed Engl. February 12, 2016; 55 (7): 2454-8.
One-hour screening of adulterated heparin by simplified peroxide digestion and fast RPIP-LC-MS(2)., Li H, Wickramasekara S, Nemes P., Anal Chem. August 18, 2015; 87 (16): 8424-32.
Single-cell mass spectrometry reveals small molecules that affect cell fates in the 16-cell embryo., Onjiko RM, Moody SA, Nemes P., Proc Natl Acad Sci U S A. May 26, 2015; 112 (21): 6545-50.
Biomolecular imaging with a C60-SIMS/MALDI dual ion source hybrid mass spectrometer: instrumentation, matrix enhancement, and single cell analysis., Lanni EJ, Dunham SJ, Nemes P, Rubakhin SS, Sweedler JV., J Am Soc Mass Spectrom. November 1, 2014; 25 (11): 1897-907.
High-throughput differentiation of heparin from other glycosaminoglycans by pyrolysis mass spectrometry., Nemes P, Hoover WJ, Keire DA., Anal Chem. August 6, 2013; 85 (15): 7405-12.
Qualitative and quantitative metabolomic investigation of single neurons by capillary electrophoresis electrospray ionization mass spectrometry., Nemes P, Rubakhin SS, Aerts JT, Sweedler JV., Nat Protoc. April 1, 2013; 8 (4): 783-99.
Combining small-volume metabolomic and transcriptomic approaches for assessing brain chemistry., Knolhoff AM, Nautiyal KM, Nemes P, Kalachikov S, Morozova I, Silver R, Sweedler JV., Anal Chem. March 19, 2013; 85 (6): 3136-43.
Single-cell metabolomics: changes in the metabolome of freshly isolated and cultured neurons., Nemes P, Knolhoff AM, Rubakhin SS, Sweedler JV., ACS Chem Neurosci. October 17, 2012; 3 (10): 782-92.
Profiling metabolites and peptides in single cells., Rubakhin SS, Romanova EV, Nemes P, Sweedler JV., Nat Methods. April 1, 2011; 8 (4 Suppl): S20-9.
Atmospheric-pressure molecular imaging of biological tissues and biofilms by LAESI mass spectrometry., Nemes P, Vertes A., J Vis Exp. September 3, 2010; (43): .
Direct analysis of lipids and small metabolites in mouse brain tissue by AP IR-MALDI and reactive LAESI mass spectrometry., Shrestha B, Nemes P, Nazarian J, Hathout Y, Hoffman EP, Vertes A., Analyst. April 1, 2010; 135 (4): 751-8.
Simultaneous imaging of small metabolites and lipids in rat brain tissues at atmospheric pressure by laser ablation electrospray ionization mass spectrometry., Nemes P, Woods AS, Vertes A., Anal Chem. February 1, 2010; 82 (3): 982-8.
Laser ablation electrospray ionization for atmospheric pressure molecular imaging mass spectrometry., Nemes P, Vertes A., Methods Mol Biol. January 1, 2010; 656 159-71.

Cell lineage-guided mass spectrometry reveals increased energy metabolism and reactive oxygen species in the vertebrate organizer., Baxi AB, Li J, Quach VM, Pade LR, Moody SA, Nemes P., Proc Natl Acad Sci U S A. February 6, 2024; 121 (6): e2311625121.

Dilute to Enrich for Deeper Proteomics: A Yolk-Depleted Carrier for Limited Populations of Embryonic (Frog) Cells., Pade LR, Lombard-Banek C, Li J, Nemes P., J Proteome Res. February 2, 2024; 23 (2): 692-703.

Time-resolved quantitative proteomic analysis of the developing Xenopus otic vesicle reveals putative congenital hearing loss candidates., Baxi AB, Nemes P, Moody SA., iScience. September 15, 2023; 26 (9): 107665.

Cell-Lineage Guided Mass Spectrometry Proteomics in the Developing (Frog) Embryo., Baxi AB, Pade LR, Nemes P., J Vis Exp. April 21, 2022; (182):

Capillary Electrophoresis Mass Spectrometry for Scalable Single-Cell Proteomics., Shen B, Pade LR, Choi SB, Muñoz-LLancao P, Manzini MC, Nemes P., Front Chem. January 1, 2022; 10 863979.

Single-Cell Mass Spectrometry of Metabolites and Proteins for Systems and Functional Biology., Portero EP, Pade L, Li J, Choi SB, Nemes P., Neuromethods. January 1, 2022; 184 87-114.

In Vivo Subcellular Mass Spectrometry Enables Proteo-Metabolomic Single-Cell Systems Biology in a Chordate Embryo Developing to a Normally Behaving Tadpole (X. laevis)*., Lombard-Banek C, Li J, Portero EP, Onjiko RM, Singer CD, Plotnick DO, Al Shabeeb RQ, Nemes P., Angew Chem Int Ed Engl. June 1, 2021; 60 (23): 12852-12858.

Altering metabolite distribution at Xenopus cleavage stages affects left-right gene expression asymmetries., Onjiko RM, Nemes P, Moody SA., Genesis. June 1, 2021; 59 (5-6): e23418.

Mass spectrometry based proteomics for developmental neurobiology in the amphibian Xenopus laevis., Baxi AB, Pade LR, Nemes P., Curr Top Dev Biol. January 1, 2021; 145 205-231.

Trace, Machine Learning of Signal Images for Trace-Sensitive Mass Spectrometry: A Case Study from Single-Cell Metabolomics., Liu Z, Portero EP, Jian Y, Zhao Y, Onjiko RM, Zeng C, Nemes P., Anal Chem. May 7, 2019; 91 (9): 5768-5776.

Microsampling Capillary Electrophoresis Mass Spectrometry Enables Single-Cell Proteomics in Complex Tissues: Developing Cell Clones in Live Xenopus laevis and Zebrafish Embryos., Lombard-Banek C, Moody SA, Manzini MC, Nemes P., Anal Chem. April 2, 2019; 91 (7): 4797-4805.

Dual cationic-anionic profiling of metabolites in a single identified cell in a live Xenopus laevis embryo by microprobe CE-ESI-MS., Portero EP, Nemes P., Analyst. January 28, 2019; 144 (3): 892-900.

Single-cell proteomics in complex tissues using microprobe capillary electrophoresis mass spectrometry., Lombard-Banek C, Choi SB, Nemes P., Methods Enzymol. January 1, 2019; 628 263-292.

Proteomic Characterization of the Neural Ectoderm Fated Cell Clones in the Xenopus laevis Embryo by High-Resolution Mass Spectrometry., Baxi AB, Lombard-Banek C, Moody SA, Nemes P., ACS Chem Neurosci. August 15, 2018; 9 (8): 2064-2073.

Microprobe Capillary Electrophoresis Mass Spectrometry for Single-cell Metabolomics in Live Frog (Xenopus laevis) Embryos., Onjiko RM, Portero EP, Moody SA, Nemes P., J Vis Exp. December 22, 2017; (130):

Metabolic Comparison of Dorsal versus Ventral Cells Directly in the Live 8-cell Frog Embryo by Microprobe Single-cell CE-ESI-MS., Onjiko RM, Plotnick DO, Moody SA, Nemes P., Anal Methods. September 14, 2017; 9 (34): 4964-4970.

In Situ Microprobe Single-Cell Capillary Electrophoresis Mass Spectrometry: Metabolic Reorganization in Single Differentiating Cells in the Live Vertebrate (Xenopus laevis) Embryo., Onjiko RM, Portero EP, Moody SA, Nemes P., Anal Chem. July 5, 2017; 89 (13): 7069-7076.

New-generation mass spectrometry expands the toolbox of cell and developmental biology., Lombard-Banek C, Portero EP, Onjiko RM, Nemes P., Genesis. January 1, 2017; 55 (1-2):

Label-free Quantification of Proteins in Single Embryonic Cells with Neural Fate in the Cleavage-Stage Frog (Xenopus laevis) Embryo using Capillary Electrophoresis Electrospray Ionization High-Resolution Mass Spectrometry (CE-ESI-HRMS)., Lombard-Banek C, Reddy S, Moody SA, Nemes P., Mol Cell Proteomics. August 1, 2016; 15 (8): 2756-68.

High-Sensitivity Mass Spectrometry for Probing Gene Translation in Single Embryonic Cells in the Early Frog (Xenopus) Embryo., Lombard-Banek C, Moody SA, Nemes P., Front Cell Dev Biol. June 24, 2016; 4 100.

Single-cell mass spectrometry with multi-solvent extraction identifies metabolic differences between left and right blastomeres in the 8-cell frog (Xenopus) embryo., Onjiko RM, Morris SE, Moody SA, Nemes P., Analyst. June 21, 2016; 141 (12): 3648-56.

Single-Cell Mass Spectrometry for Discovery Proteomics: Quantifying Translational Cell Heterogeneity in the 16-Cell Frog (Xenopus) Embryo., Lombard-Banek C, Moody SA, Nemes P., Angew Chem Int Ed Engl. February 12, 2016; 55 (7): 2454-8.

One-hour screening of adulterated heparin by simplified peroxide digestion and fast RPIP-LC-MS(2)., Li H, Wickramasekara S, Nemes P., Anal Chem. August 18, 2015; 87 (16): 8424-32.

Single-cell mass spectrometry reveals small molecules that affect cell fates in the 16-cell embryo., Onjiko RM, Moody SA, Nemes P., Proc Natl Acad Sci U S A. May 26, 2015; 112 (21): 6545-50.

Biomolecular imaging with a C60-SIMS/MALDI dual ion source hybrid mass spectrometer: instrumentation, matrix enhancement, and single cell analysis., Lanni EJ, Dunham SJ, Nemes P, Rubakhin SS, Sweedler JV., J Am Soc Mass Spectrom. November 1, 2014; 25 (11): 1897-907.

High-throughput differentiation of heparin from other glycosaminoglycans by pyrolysis mass spectrometry., Nemes P, Hoover WJ, Keire DA., Anal Chem. August 6, 2013; 85 (15): 7405-12.

Qualitative and quantitative metabolomic investigation of single neurons by capillary electrophoresis electrospray ionization mass spectrometry., Nemes P, Rubakhin SS, Aerts JT, Sweedler JV., Nat Protoc. April 1, 2013; 8 (4): 783-99.

Combining small-volume metabolomic and transcriptomic approaches for assessing brain chemistry., Knolhoff AM, Nautiyal KM, Nemes P, Kalachikov S, Morozova I, Silver R, Sweedler JV., Anal Chem. March 19, 2013; 85 (6): 3136-43.

Single-cell metabolomics: changes in the metabolome of freshly isolated and cultured neurons., Nemes P, Knolhoff AM, Rubakhin SS, Sweedler JV., ACS Chem Neurosci. October 17, 2012; 3 (10): 782-92.

Profiling metabolites and peptides in single cells., Rubakhin SS, Romanova EV, Nemes P, Sweedler JV., Nat Methods. April 1, 2011; 8 (4 Suppl): S20-9.

Atmospheric-pressure molecular imaging of biological tissues and biofilms by LAESI mass spectrometry., Nemes P, Vertes A., J Vis Exp. September 3, 2010; (43): .

Direct analysis of lipids and small metabolites in mouse brain tissue by AP IR-MALDI and reactive LAESI mass spectrometry., Shrestha B, Nemes P, Nazarian J, Hathout Y, Hoffman EP, Vertes A., Analyst. April 1, 2010; 135 (4): 751-8.

Simultaneous imaging of small metabolites and lipids in rat brain tissues at atmospheric pressure by laser ablation electrospray ionization mass spectrometry., Nemes P, Woods AS, Vertes A., Anal Chem. February 1, 2010; 82 (3): 982-8.

Laser ablation electrospray ionization for atmospheric pressure molecular imaging mass spectrometry., Nemes P, Vertes A., Methods Mol Biol. January 1, 2010; 656 159-71.

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