Andrey G Zaraisky - Publications

Publications (56)

XB-PERS-2911

Publications By Andrey G Zaraisky

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The Molecular Mechanism of Body Axis Induction in Lampreys May Differ from That in Amphibians., Ermakova GV, Kucheryavyy AV, Zaraisky AG, Bayramov AV., Int J Mol Sci. February 19, 2024; 25 (4):
Mechanical Tensions Regulate Gene Expression in the Xenopus laevis Axial Tissues., Eroshkin FM, Fefelova EA, Bredov DV, Orlov EE, Kolyupanova NM, Mazur AM, Sokolov AS, Zhigalova NA, Prokhortchouk EB, Nesterenko AM, Zaraisky AG., Int J Mol Sci. January 10, 2024; 25 (2):
Wide-scale identification of novel/eliminated genes responsible for evolutionary transformations., Lyubetsky VA, Rubanov LI, Tereshina MB, Ivanova AS, Araslanova KR, Uroshlev LA, Goremykina GI, Yang JR, Kanovei VG, Zverkov OA, Shitikov AD, Korotkova DD, Zaraisky AG., Biol Direct. August 11, 2023; 18 (1): 45.
Insulin Receptor-Related Receptor Regulates the Rate of Early Development in Xenopus laevis., Korotkova DD, Gantsova EA, Goryashchenko AS, Eroshkin FM, Serova OV, Sokolov AS, Sharko F, Zhenilo SV, Martynova NY, Petrenko AG, Zaraisky AG, Deyev IE., Int J Mol Sci. August 17, 2022; 23 (16):
The Cytoskeletal Protein Zyxin Inhibits Retinoic Acid Signaling by Destabilizing the Maternal mRNA of the RXRγ Nuclear Receptor., Parshina EA, Orlov EE, Zaraisky AG, Martynova NY., Int J Mol Sci. May 17, 2022; 23 (10):
Targeted search for scaling genes reveals matrixmetalloproteinase 3 as a scaler of the dorsal-ventral pattern in Xenopus laevis embryos., Orlov EE, Nesterenko AM, Korotkova DD, Parshina EA, Martynova NY, Zaraisky AG., Dev Cell. January 10, 2022; 57 (1): 95-111.e12.
Protocol for separation of the nuclear and the cytoplasmic fractions of Xenopus laevis embryonic cells for studying protein shuttling., Martynova NY, Parshina EA, Zaraisky AG., STAR Protoc. April 21, 2021; 2 (2): 100449.
Using RNA-binding proteins for immunoprecipitation of mRNAs from Xenopus laevis embryos., Martynova NY, Parshina EA, Zaraisky AG., STAR Protoc. April 21, 2021; 2 (2): 100552.
The Secreted Protein Disulfide Isomerase Ag1 Lost by Ancestors of Poorly Regenerating Vertebrates Is Required for Xenopus laevis Tail Regeneration., Ivanova AS, Tereshina MB, Araslanova KR, Martynova NY, Zaraisky AG., Front Cell Dev Biol. January 1, 2021; 9 738940.
Cytoskeletal Protein Zyxin Inhibits the Activity of Genes Responsible for Embryonic Stem Cell Status., Parshina EA, Eroshkin FM, Оrlov EE, Gyoeva FK, Shokhina AG, Staroverov DB, Belousov VV, Zhigalova NA, Prokhortchouk EB, Zaraisky AG, Martynova NY., Cell Rep. November 17, 2020; 33 (7): 108396.
Bioinformatics Screening of Genes Specific for Well-Regenerating Vertebrates Reveals c-answer, a Regulator of Brain Development and Regeneration., Korotkova DD, Lyubetsky VA, Ivanova AS, Rubanov LI, Seliverstov AV, Zverkov OA, Martynova NY, Nesterenko AM, Tereshina MB, Peshkin L, Zaraisky AG., Cell Rep. October 22, 2019; 29 (4): 1027-1040.e6.
Agr2-interacting Prod1-like protein Tfp4 from Xenopus laevis is necessary for early forebrain and eye development as well as for the tadpole appendage regeneration., Tereshina MB, Ivanova AS, Eroshkin FM, Korotkova DD, Nesterenko AM, Bayramov AV, Solovieva EA, Parshina EA, Orlov EE, Martynova NY, Zaraisky AG., Genesis. May 1, 2019; 57 (5): e23293.
Genetically encodable bioluminescent system from fungi., Kotlobay AA, Sarkisyan KS, Mokrushina YA, Marcet-Houben M, Serebrovskaya EO, Markina NM, Gonzalez Somermeyer L, Gorokhovatsky AY, Vvedensky A, Purtov KV, Petushkov VN, Rodionova NS, Chepurnyh TV, Fakhranurova LI, Guglya EB, Ziganshin R, Tsarkova AS, Kaskova ZM, Shender V, Abakumov M, Abakumova TO, Povolotskaya IS, Eroshkin FM, Zaraisky AG, Mishin AS, Dolgov SV, Mitiouchkina TY, Kopantzev EP, Waldenmaier HE, Oliveira AG, Oba Y, Barsova E, Bogdanova EA, Gabaldón T, Stevani CV, Lukyanov S, Smirnov IV, Gitelson JI, Kondrashov FA, Yampolsky IV., Proc Natl Acad Sci U S A. December 11, 2018; 115 (50): 12728-12732.
The cytoskeletal protein Zyxin interacts with the zinc-finger transcription factor Zic1 and plays the role of a scaffold for Gli1 and Zic1 interactions during early development of Xenopus laevis., Martynova NY, Parshina EA, Ermolina LV, Zaraisky AG., Biochem Biophys Res Commun. September 26, 2018; 504 (1): 251-256.
Ras-dva small GTPases lost during evolution of amniotes regulate regeneration in anamniotes., Ivanova AS, Korotkova DD, Ermakova GV, Martynova NY, Zaraisky AG, Tereshina MB., Sci Rep. August 29, 2018; 8 (1): 13035.
HMG-box factor SoxD/Sox15 and homeodomain-containing factor Xanf1/Hesx1 directly interact and regulate the expression of Xanf1/Hesx1 during early forebrain development in Xenopus laevis., Martynova NY, Eroshkin FM, Оrlov EE, Zaraisky AG., Gene. January 5, 2018; 638 52-59.
Noggin4 is a long-range inhibitor of Wnt8 signalling that regulates head development in Xenopus laevis., Eroshkin FM, Nesterenko AM, Borodulin AV, Martynova NY, Ermakova GV, Gyoeva FK, Orlov EE, Belogurov AA, Lukyanov KA, Bayramov AV, Zaraisky AG., Sci Rep. January 22, 2016; 6 23049.
[Secreted Protein Noggin4 Participates in the Formation of Forebrain Structures in Xenopus laevis by Inhibiting the Wnt/Beta-Catenin Signaling Pathway]., Bayramov AV, Eroshkin FM, Borodulin AV, Yu Martynova N, Ermakova GV, Zaraisky AG., Ontogenez. January 1, 2016; 47 (4): 229-34.
Affinity of the heparin binding motif of Noggin1 to heparan sulfate and its visualization in the embryonic tissues., Nesterenko AM, Orlov EE, Ermakova GV, Ivanov IA, Semenyuk PI, Orlov VN, Martynova NY, Zaraisky AG., Biochem Biophys Res Commun. December 4, 2015; 468 (1-2): 331-6.
Fluorescent ratiometric pH indicator SypHer2: Applications in neuroscience and regenerative biology., Matlashov ME, Bogdanova YA, Ermakova GV, Mishina NM, Ermakova YG, Nikitin ES, Balaban PM, Okabe S, Lukyanov S, Enikolopov G, Zaraisky AG, Belousov VV., Biochim Biophys Acta. November 1, 2015; 1850 (11): 2318-28.
Method for quantitative analysis of nonsense-mediated mRNA decay at the single cell level., Pereverzev AP, Gurskaya NG, Ermakova GV, Kudryavtseva EI, Markina NM, Kotlobay AA, Lukyanov SA, Zaraisky AG, Lukyanov KA., Sci Rep. January 12, 2015; 5 7729.
[The Point Mutation in NOGGIN2 Protein That Enhances Its Ability to Bind Activin]., Eroshkin FM, Fedina NV, Martynova NY, Bayramov AV, Zaraisky AG., Bioorg Khim. January 1, 2015; 41 (6): 749-51.
Ras-dva1 small GTPase regulates telencephalon development in Xenopus laevis embryos by controlling Fgf8 and Agr signaling at the anterior border of the neural plate., Tereshina MB, Ermakova GV, Ivanova AS, Zaraisky AG., Biol Open. March 15, 2014; 3 (3): 192-203.
The cytoskeletal protein Zyxin inhibits Shh signaling during the CNS patterning in Xenopus laevis through interaction with the transcription factor Gli1., Martynova NY, Ermolina LV, Ermakova GV, Eroshkin FM, Gyoeva FK, Baturina NS, Zaraisky AG., Dev Biol. August 1, 2013; 380 (1): 37-48.
Agr genes, missing in amniotes, are involved in the body appendages regeneration in frog tadpoles., Ivanova AS, Tereshina MB, Ermakova GV, Belousov VV, Zaraisky AG., Sci Rep. January 1, 2013; 3 1279.
Noggin4 expression during chick embryonic development., Borodulin AV, Eroshkin FM, Bayramov AV, Zaraisky AG., Int J Dev Biol. January 1, 2012; 56 (5): 403-6.
A monomeric red fluorescent protein with low cytotoxicity., Shemiakina II, Ermakova GV, Cranfill PJ, Baird MA, Evans RA, Souslova EA, Staroverov DB, Gorokhovatsky AY, Putintseva EV, Gorodnicheva TV, Chepurnykh TV, Strukova L, Lukyanov S, Zaraisky AG, Davidson MW, Chudakov DM, Shcherbo D., Nat Commun. January 1, 2012; 3 1204.
Novel functions of Noggin proteins: inhibition of Activin/Nodal and Wnt signaling., Bayramov AV, Eroshkin FM, Martynova NY, Ermakova GV, Solovieva EA, Zaraisky AG., Development. December 1, 2011; 138 (24): 5345-56.
Light-induced blockage of cell division with a chromatin-targeted phototoxic fluorescent protein., Serebrovskaya EO, Gorodnicheva TV, Ermakova GV, Solovieva EA, Sharonov GV, Zagaynova EV, Chudakov DM, Lukyanov S, Zaraisky AG, Lukyanov KA., Biochem J. April 1, 2011; 435 (1): 65-71.
Expression patterns of genes encoding small GTPases Ras-dva-1 and Ras-dva-2 in the Xenopus laevis tadpoles., Tereshina MB, Bayramov AV, Zaraisky AG., Gene Expr Patterns. January 1, 2011; 11 (1-2): 156-61.
Near-infrared fluorescent proteins., Shcherbo D, Shemiakina II, Ryabova AV, Luker KE, Schmidt BT, Souslova EA, Gorodnicheva TV, Strukova L, Shidlovskiy KM, Britanova OV, Zaraisky AG, Lukyanov KA, Loschenov VB, Luker GD, Chudakov DM., Nat Methods. October 1, 2010; 7 (10): 827-9.
Far-red fluorescent tags for protein imaging in living tissues., Shcherbo D, Murphy CS, Ermakova GV, Solovieva EA, Chepurnykh TV, Shcheglov AS, Verkhusha VV, Pletnev VZ, Hazelwood KL, Roche PM, Lukyanov S, Zaraisky AG, Davidson MW, Chudakov DM., Biochem J. March 15, 2009; 418 (3): 567-74.
The LIM-domain protein Zyxin binds the homeodomain factor Xanf1/Hesx1 and modulates its activity in the anterior neural plate of Xenopus laevis embryo., Martynova NY, Eroshkin FM, Ermolina LV, Ermakova GV, Korotaeva AL, Smurova KM, Gyoeva FK, Zaraisky AG., Dev Dyn. March 1, 2008; 237 (3): 736-49.
[Transcriptional factor Xanf1 interacts with the focal adhesion protein zyxin in the early development of the Xenopus laevis brain], Martynova NY, Ermolina LV, Eroshkin FM, Gioeva FK, Zaraisky AG., Bioorg Khim. January 1, 2008; 34 (4): 573-6.
Bright far-red fluorescent protein for whole-body imaging., Shcherbo D, Merzlyak EM, Chepurnykh TV, Fradkov AF, Ermakova GV, Solovieva EA, Lukyanov KA, Bogdanova EA, Zaraisky AG, Lukyanov S, Chudakov DM., Nat Methods. September 1, 2007; 4 (9): 741-6.
The homeodomain factor Xanf represses expression of genes in the presumptive rostral forebrain that specify more caudal brain regions., Ermakova GV, Solovieva EA, Martynova NY, Zaraisky AG., Dev Biol. July 15, 2007; 307 (2): 483-97.
Structural basis for the fast maturation of Arthropoda green fluorescent protein., Evdokimov AG, Pokross ME, Egorov NS, Zaraisky AG, Yampolsky IV, Merzlyak EM, Shkoporov AN, Sander I, Lukyanov KA, Chudakov DM., EMBO Rep. October 1, 2006; 7 (10): 1006-12.
Hydroxyproline-based DNA mimics provide an efficient gene silencing in vitro and in vivo., Efimov VA, Birikh KR, Staroverov DB, Lukyanov SA, Tereshina MB, Zaraisky AG, Chakhmakhcheva OG., Nucleic Acids Res. May 2, 2006; 34 (8): 2247-57.
Ras-dva, a member of novel family of small GTPases, is required for the anterior ectoderm patterning in the Xenopus laevis embryo., Tereshina MB, Zaraisky AG, Novoselov VV., Development. February 1, 2006; 133 (3): 485-94.
Multiple noggins in vertebrate genome: cloning and expression of noggin2 and noggin4 in Xenopus laevis., Eroshkin FM, Ermakova GV, Bayramov AV, Zaraisky AG., Gene Expr Patterns. January 1, 2006; 6 (2): 180-6.
The homeodomain-containing transcription factor X-nkx-5.1 inhibits expression of the homeobox gene Xanf-1 during the Xenopus laevis forebrain development., Bayramov AV, Martynova NY, Eroshkin FM, Ermakova GV, Zaraisky AG., Mech Dev. December 1, 2004; 121 (12): 1425-41.
Patterning the forebrain: FoxA4a/Pintallavis and Xvent2 determine the posterior limit of Xanf1 expression in the neural plate., Martynova N, Eroshkin F, Ermakova G, Bayramov A, Gray J, Grainger R, Zaraisky A., Development. May 1, 2004; 131 (10): 2329-38.
High stability of Discosoma DsRed as compared to Aequorea EGFP., Verkhusha VV, Kuznetsova IM, Stepanenko OV, Zaraisky AG, Shavlovsky MM, Turoverov KK, Uversky VN., Biochemistry. July 8, 2003; 42 (26): 7879-84.
Expression zones of three novel genes abut the developing anterior neural plate of Xenopus embryo., Novoselov VV, Alexandrova EM, Ermakova GV, Zaraisky AG., Gene Expr Patterns. May 1, 2003; 3 (2): 225-30.
Kindling fluorescent proteins for precise in vivo photolabeling., Chudakov DM, Belousov VV, Zaraisky AG, Novoselov VV, Staroverov DB, Zorov DB, Lukyanov S, Lukyanov KA., Nat Biotechnol. February 1, 2003; 21 (2): 191-4.
Analysis of DsRed Mutants. Space around the fluorophore accelerates fluorescence development., Terskikh AV, Fradkov AF, Zaraisky AG, Kajava AV, Angres B., J Biol Chem. March 8, 2002; 277 (10): 7633-6.
Characterization of cis-regulatory elements of the homeobox gene Xanf-1., Eroshkin F, Kazanskaya O, Martynova N, Zaraisky A., Gene. February 20, 2002; 285 (1-2): 279-86.
Subcellular localization and targeting of glucocorticoid receptor protein fusions expressed in transgenic Arabidopsis thaliana., Brockmann B, Smith MW, Zaraisky AG, Harrison K, Okada K, Kamiya Y., Plant Cell Physiol. September 1, 2001; 42 (9): 942-51.
Fluorescent proteins from nonbioluminescent Anthozoa species., Matz MV, Fradkov AF, Labas YA, Savitsky AP, Zaraisky AG, Markelov ML, Lukyanov SA., Nat Biotechnol. October 1, 1999; 17 (10): 969-73.
The homeobox gene, Xanf-1, can control both neural differentiation and patterning in the presumptive anterior neurectoderm of the Xenopus laevis embryo., Ermakova GV, Alexandrova EM, Kazanskaya OV, Vasiliev OL, Smith MW, Zaraisky AG., Development. October 1, 1999; 126 (20): 4513-23.

The Molecular Mechanism of Body Axis Induction in Lampreys May Differ from That in Amphibians., Ermakova GV, Kucheryavyy AV, Zaraisky AG, Bayramov AV., Int J Mol Sci. February 19, 2024; 25 (4):

Mechanical Tensions Regulate Gene Expression in the Xenopus laevis Axial Tissues., Eroshkin FM, Fefelova EA, Bredov DV, Orlov EE, Kolyupanova NM, Mazur AM, Sokolov AS, Zhigalova NA, Prokhortchouk EB, Nesterenko AM, Zaraisky AG., Int J Mol Sci. January 10, 2024; 25 (2):

Wide-scale identification of novel/eliminated genes responsible for evolutionary transformations., Lyubetsky VA, Rubanov LI, Tereshina MB, Ivanova AS, Araslanova KR, Uroshlev LA, Goremykina GI, Yang JR, Kanovei VG, Zverkov OA, Shitikov AD, Korotkova DD, Zaraisky AG., Biol Direct. August 11, 2023; 18 (1): 45.

Insulin Receptor-Related Receptor Regulates the Rate of Early Development in Xenopus laevis., Korotkova DD, Gantsova EA, Goryashchenko AS, Eroshkin FM, Serova OV, Sokolov AS, Sharko F, Zhenilo SV, Martynova NY, Petrenko AG, Zaraisky AG, Deyev IE., Int J Mol Sci. August 17, 2022; 23 (16):

The Cytoskeletal Protein Zyxin Inhibits Retinoic Acid Signaling by Destabilizing the Maternal mRNA of the RXRγ Nuclear Receptor., Parshina EA, Orlov EE, Zaraisky AG, Martynova NY., Int J Mol Sci. May 17, 2022; 23 (10):

Targeted search for scaling genes reveals matrixmetalloproteinase 3 as a scaler of the dorsal-ventral pattern in Xenopus laevis embryos., Orlov EE, Nesterenko AM, Korotkova DD, Parshina EA, Martynova NY, Zaraisky AG., Dev Cell. January 10, 2022; 57 (1): 95-111.e12.

Protocol for separation of the nuclear and the cytoplasmic fractions of Xenopus laevis embryonic cells for studying protein shuttling., Martynova NY, Parshina EA, Zaraisky AG., STAR Protoc. April 21, 2021; 2 (2): 100449.

Using RNA-binding proteins for immunoprecipitation of mRNAs from Xenopus laevis embryos., Martynova NY, Parshina EA, Zaraisky AG., STAR Protoc. April 21, 2021; 2 (2): 100552.

The Secreted Protein Disulfide Isomerase Ag1 Lost by Ancestors of Poorly Regenerating Vertebrates Is Required for Xenopus laevis Tail Regeneration., Ivanova AS, Tereshina MB, Araslanova KR, Martynova NY, Zaraisky AG., Front Cell Dev Biol. January 1, 2021; 9 738940.

Cytoskeletal Protein Zyxin Inhibits the Activity of Genes Responsible for Embryonic Stem Cell Status., Parshina EA, Eroshkin FM, Оrlov EE, Gyoeva FK, Shokhina AG, Staroverov DB, Belousov VV, Zhigalova NA, Prokhortchouk EB, Zaraisky AG, Martynova NY., Cell Rep. November 17, 2020; 33 (7): 108396.

Bioinformatics Screening of Genes Specific for Well-Regenerating Vertebrates Reveals c-answer, a Regulator of Brain Development and Regeneration., Korotkova DD, Lyubetsky VA, Ivanova AS, Rubanov LI, Seliverstov AV, Zverkov OA, Martynova NY, Nesterenko AM, Tereshina MB, Peshkin L, Zaraisky AG., Cell Rep. October 22, 2019; 29 (4): 1027-1040.e6.

Agr2-interacting Prod1-like protein Tfp4 from Xenopus laevis is necessary for early forebrain and eye development as well as for the tadpole appendage regeneration., Tereshina MB, Ivanova AS, Eroshkin FM, Korotkova DD, Nesterenko AM, Bayramov AV, Solovieva EA, Parshina EA, Orlov EE, Martynova NY, Zaraisky AG., Genesis. May 1, 2019; 57 (5): e23293.

Genetically encodable bioluminescent system from fungi., Kotlobay AA, Sarkisyan KS, Mokrushina YA, Marcet-Houben M, Serebrovskaya EO, Markina NM, Gonzalez Somermeyer L, Gorokhovatsky AY, Vvedensky A, Purtov KV, Petushkov VN, Rodionova NS, Chepurnyh TV, Fakhranurova LI, Guglya EB, Ziganshin R, Tsarkova AS, Kaskova ZM, Shender V, Abakumov M, Abakumova TO, Povolotskaya IS, Eroshkin FM, Zaraisky AG, Mishin AS, Dolgov SV, Mitiouchkina TY, Kopantzev EP, Waldenmaier HE, Oliveira AG, Oba Y, Barsova E, Bogdanova EA, Gabaldón T, Stevani CV, Lukyanov S, Smirnov IV, Gitelson JI, Kondrashov FA, Yampolsky IV., Proc Natl Acad Sci U S A. December 11, 2018; 115 (50): 12728-12732.

The cytoskeletal protein Zyxin interacts with the zinc-finger transcription factor Zic1 and plays the role of a scaffold for Gli1 and Zic1 interactions during early development of Xenopus laevis., Martynova NY, Parshina EA, Ermolina LV, Zaraisky AG., Biochem Biophys Res Commun. September 26, 2018; 504 (1): 251-256.

Ras-dva small GTPases lost during evolution of amniotes regulate regeneration in anamniotes., Ivanova AS, Korotkova DD, Ermakova GV, Martynova NY, Zaraisky AG, Tereshina MB., Sci Rep. August 29, 2018; 8 (1): 13035.

HMG-box factor SoxD/Sox15 and homeodomain-containing factor Xanf1/Hesx1 directly interact and regulate the expression of Xanf1/Hesx1 during early forebrain development in Xenopus laevis., Martynova NY, Eroshkin FM, Оrlov EE, Zaraisky AG., Gene. January 5, 2018; 638 52-59.

Noggin4 is a long-range inhibitor of Wnt8 signalling that regulates head development in Xenopus laevis., Eroshkin FM, Nesterenko AM, Borodulin AV, Martynova NY, Ermakova GV, Gyoeva FK, Orlov EE, Belogurov AA, Lukyanov KA, Bayramov AV, Zaraisky AG., Sci Rep. January 22, 2016; 6 23049.

[Secreted Protein Noggin4 Participates in the Formation of Forebrain Structures in Xenopus laevis by Inhibiting the Wnt/Beta-Catenin Signaling Pathway]., Bayramov AV, Eroshkin FM, Borodulin AV, Yu Martynova N, Ermakova GV, Zaraisky AG., Ontogenez. January 1, 2016; 47 (4): 229-34.

Affinity of the heparin binding motif of Noggin1 to heparan sulfate and its visualization in the embryonic tissues., Nesterenko AM, Orlov EE, Ermakova GV, Ivanov IA, Semenyuk PI, Orlov VN, Martynova NY, Zaraisky AG., Biochem Biophys Res Commun. December 4, 2015; 468 (1-2): 331-6.

Fluorescent ratiometric pH indicator SypHer2: Applications in neuroscience and regenerative biology., Matlashov ME, Bogdanova YA, Ermakova GV, Mishina NM, Ermakova YG, Nikitin ES, Balaban PM, Okabe S, Lukyanov S, Enikolopov G, Zaraisky AG, Belousov VV., Biochim Biophys Acta. November 1, 2015; 1850 (11): 2318-28.

Method for quantitative analysis of nonsense-mediated mRNA decay at the single cell level., Pereverzev AP, Gurskaya NG, Ermakova GV, Kudryavtseva EI, Markina NM, Kotlobay AA, Lukyanov SA, Zaraisky AG, Lukyanov KA., Sci Rep. January 12, 2015; 5 7729.

[The Point Mutation in NOGGIN2 Protein That Enhances Its Ability to Bind Activin]., Eroshkin FM, Fedina NV, Martynova NY, Bayramov AV, Zaraisky AG., Bioorg Khim. January 1, 2015; 41 (6): 749-51.

Ras-dva1 small GTPase regulates telencephalon development in Xenopus laevis embryos by controlling Fgf8 and Agr signaling at the anterior border of the neural plate., Tereshina MB, Ermakova GV, Ivanova AS, Zaraisky AG., Biol Open. March 15, 2014; 3 (3): 192-203.

The cytoskeletal protein Zyxin inhibits Shh signaling during the CNS patterning in Xenopus laevis through interaction with the transcription factor Gli1., Martynova NY, Ermolina LV, Ermakova GV, Eroshkin FM, Gyoeva FK, Baturina NS, Zaraisky AG., Dev Biol. August 1, 2013; 380 (1): 37-48.

Agr genes, missing in amniotes, are involved in the body appendages regeneration in frog tadpoles., Ivanova AS, Tereshina MB, Ermakova GV, Belousov VV, Zaraisky AG., Sci Rep. January 1, 2013; 3 1279.

Noggin4 expression during chick embryonic development., Borodulin AV, Eroshkin FM, Bayramov AV, Zaraisky AG., Int J Dev Biol. January 1, 2012; 56 (5): 403-6.

A monomeric red fluorescent protein with low cytotoxicity., Shemiakina II, Ermakova GV, Cranfill PJ, Baird MA, Evans RA, Souslova EA, Staroverov DB, Gorokhovatsky AY, Putintseva EV, Gorodnicheva TV, Chepurnykh TV, Strukova L, Lukyanov S, Zaraisky AG, Davidson MW, Chudakov DM, Shcherbo D., Nat Commun. January 1, 2012; 3 1204.

Novel functions of Noggin proteins: inhibition of Activin/Nodal and Wnt signaling., Bayramov AV, Eroshkin FM, Martynova NY, Ermakova GV, Solovieva EA, Zaraisky AG., Development. December 1, 2011; 138 (24): 5345-56.

Light-induced blockage of cell division with a chromatin-targeted phototoxic fluorescent protein., Serebrovskaya EO, Gorodnicheva TV, Ermakova GV, Solovieva EA, Sharonov GV, Zagaynova EV, Chudakov DM, Lukyanov S, Zaraisky AG, Lukyanov KA., Biochem J. April 1, 2011; 435 (1): 65-71.

Expression patterns of genes encoding small GTPases Ras-dva-1 and Ras-dva-2 in the Xenopus laevis tadpoles., Tereshina MB, Bayramov AV, Zaraisky AG., Gene Expr Patterns. January 1, 2011; 11 (1-2): 156-61.

Near-infrared fluorescent proteins., Shcherbo D, Shemiakina II, Ryabova AV, Luker KE, Schmidt BT, Souslova EA, Gorodnicheva TV, Strukova L, Shidlovskiy KM, Britanova OV, Zaraisky AG, Lukyanov KA, Loschenov VB, Luker GD, Chudakov DM., Nat Methods. October 1, 2010; 7 (10): 827-9.

Far-red fluorescent tags for protein imaging in living tissues., Shcherbo D, Murphy CS, Ermakova GV, Solovieva EA, Chepurnykh TV, Shcheglov AS, Verkhusha VV, Pletnev VZ, Hazelwood KL, Roche PM, Lukyanov S, Zaraisky AG, Davidson MW, Chudakov DM., Biochem J. March 15, 2009; 418 (3): 567-74.

The LIM-domain protein Zyxin binds the homeodomain factor Xanf1/Hesx1 and modulates its activity in the anterior neural plate of Xenopus laevis embryo., Martynova NY, Eroshkin FM, Ermolina LV, Ermakova GV, Korotaeva AL, Smurova KM, Gyoeva FK, Zaraisky AG., Dev Dyn. March 1, 2008; 237 (3): 736-49.

[Transcriptional factor Xanf1 interacts with the focal adhesion protein zyxin in the early development of the Xenopus laevis brain], Martynova NY, Ermolina LV, Eroshkin FM, Gioeva FK, Zaraisky AG., Bioorg Khim. January 1, 2008; 34 (4): 573-6.

Bright far-red fluorescent protein for whole-body imaging., Shcherbo D, Merzlyak EM, Chepurnykh TV, Fradkov AF, Ermakova GV, Solovieva EA, Lukyanov KA, Bogdanova EA, Zaraisky AG, Lukyanov S, Chudakov DM., Nat Methods. September 1, 2007; 4 (9): 741-6.

The homeodomain factor Xanf represses expression of genes in the presumptive rostral forebrain that specify more caudal brain regions., Ermakova GV, Solovieva EA, Martynova NY, Zaraisky AG., Dev Biol. July 15, 2007; 307 (2): 483-97.

Structural basis for the fast maturation of Arthropoda green fluorescent protein., Evdokimov AG, Pokross ME, Egorov NS, Zaraisky AG, Yampolsky IV, Merzlyak EM, Shkoporov AN, Sander I, Lukyanov KA, Chudakov DM., EMBO Rep. October 1, 2006; 7 (10): 1006-12.

Hydroxyproline-based DNA mimics provide an efficient gene silencing in vitro and in vivo., Efimov VA, Birikh KR, Staroverov DB, Lukyanov SA, Tereshina MB, Zaraisky AG, Chakhmakhcheva OG., Nucleic Acids Res. May 2, 2006; 34 (8): 2247-57.

Ras-dva, a member of novel family of small GTPases, is required for the anterior ectoderm patterning in the Xenopus laevis embryo., Tereshina MB, Zaraisky AG, Novoselov VV., Development. February 1, 2006; 133 (3): 485-94.

Multiple noggins in vertebrate genome: cloning and expression of noggin2 and noggin4 in Xenopus laevis., Eroshkin FM, Ermakova GV, Bayramov AV, Zaraisky AG., Gene Expr Patterns. January 1, 2006; 6 (2): 180-6.

The homeodomain-containing transcription factor X-nkx-5.1 inhibits expression of the homeobox gene Xanf-1 during the Xenopus laevis forebrain development., Bayramov AV, Martynova NY, Eroshkin FM, Ermakova GV, Zaraisky AG., Mech Dev. December 1, 2004; 121 (12): 1425-41.

Patterning the forebrain: FoxA4a/Pintallavis and Xvent2 determine the posterior limit of Xanf1 expression in the neural plate., Martynova N, Eroshkin F, Ermakova G, Bayramov A, Gray J, Grainger R, Zaraisky A., Development. May 1, 2004; 131 (10): 2329-38.

High stability of Discosoma DsRed as compared to Aequorea EGFP., Verkhusha VV, Kuznetsova IM, Stepanenko OV, Zaraisky AG, Shavlovsky MM, Turoverov KK, Uversky VN., Biochemistry. July 8, 2003; 42 (26): 7879-84.

Expression zones of three novel genes abut the developing anterior neural plate of Xenopus embryo., Novoselov VV, Alexandrova EM, Ermakova GV, Zaraisky AG., Gene Expr Patterns. May 1, 2003; 3 (2): 225-30.

Kindling fluorescent proteins for precise in vivo photolabeling., Chudakov DM, Belousov VV, Zaraisky AG, Novoselov VV, Staroverov DB, Zorov DB, Lukyanov S, Lukyanov KA., Nat Biotechnol. February 1, 2003; 21 (2): 191-4.

Analysis of DsRed Mutants. Space around the fluorophore accelerates fluorescence development., Terskikh AV, Fradkov AF, Zaraisky AG, Kajava AV, Angres B., J Biol Chem. March 8, 2002; 277 (10): 7633-6.

Characterization of cis-regulatory elements of the homeobox gene Xanf-1., Eroshkin F, Kazanskaya O, Martynova N, Zaraisky A., Gene. February 20, 2002; 285 (1-2): 279-86.

Subcellular localization and targeting of glucocorticoid receptor protein fusions expressed in transgenic Arabidopsis thaliana., Brockmann B, Smith MW, Zaraisky AG, Harrison K, Okada K, Kamiya Y., Plant Cell Physiol. September 1, 2001; 42 (9): 942-51.

Fluorescent proteins from nonbioluminescent Anthozoa species., Matz MV, Fradkov AF, Labas YA, Savitsky AP, Zaraisky AG, Markelov ML, Lukyanov SA., Nat Biotechnol. October 1, 1999; 17 (10): 969-73.

The homeobox gene, Xanf-1, can control both neural differentiation and patterning in the presumptive anterior neurectoderm of the Xenopus laevis embryo., Ermakova GV, Alexandrova EM, Kazanskaya OV, Vasiliev OL, Smith MW, Zaraisky AG., Development. October 1, 1999; 126 (20): 4513-23.

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