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| obsolete anatomical site | undefined | Deprecated |
| obsolete archencephalic region | undefined | Deprecated |
| obsolete caudal notochord | NF stage 12.5 to NF stage 66 | Deprecated |
| obsolete cortex | undefined | Deprecated |
| obsolete deep (mesenchymal) layer | undefined | Deprecated |
| obsolete deuterencephalic region | undefined | Deprecated |
| obsolete ear placode | undefined | Deprecated |
| obsolete fore epipodium | undefined | Deprecated |
| obsolete fore mesopodium | undefined | Deprecated |
| obsolete fore metapodium | undefined | Deprecated |
| obsolete fore propodium | undefined | Deprecated |
| obsolete germ line cell | NF stage 40 to death | Deprecated |
| obsolete glomerus | undefined | Deprecated |
| obsolete hind epipodium | undefined | Deprecated |
| obsolete hind mesopodium | undefined | Deprecated |
| obsolete hind metapodium | undefined | Deprecated |
| obsolete hind propodium | undefined | Deprecated |
| obsolete larval structure | undefined | Deprecated |
| obsolete left eye | NF stage 28 to death | Deprecated |
| obsolete left forelimb | NF stage 55 to death | Deprecated |
| obsolete left hindlimb | NF stage 55 to death | Deprecated |
| obsolete left inner ear | NF stage 43 to death | Deprecated |
| obsolete left olfactory pit | NF stage 29 and 30 to NF stage 50 | Deprecated |
| obsolete left optic vesicle | NF stage 18 to NF stage 32 | Deprecated |
| obsolete left part of brain | NF stage 22 to death | Deprecated |
| obsolete left part of branchial arch skeleton | NF stage 27 to death | Deprecated |
| obsolete loop of Henle | undefined | Deprecated |
| obsolete neural fold | undefined | Deprecated |
| obsolete olfactory apparatus | undefined | Deprecated |
| obsolete pronephric capsule | undefined | Deprecated |
| obsolete pronephric nephron segment S1 | undefined | Deprecated |
| obsolete pronephros | undefined | Deprecated |
| obsolete renal distal convoluted tubule | undefined | Deprecated |
| obsolete renal proximal convoluted tubule | undefined | Deprecated |
| obsolete right eye | NF stage 28 to death | Deprecated |
| obsolete right forelimb | NF stage 55 to death | Deprecated |
| obsolete right hindlimb | NF stage 55 to death | Deprecated |
| obsolete right inner ear | NF stage 43 to death | Deprecated |
| obsolete right olfactory pit | NF stage 29 and 30 to NF stage 50 | Deprecated |
| obsolete right optic vesicle | NF stage 18 to NF stage 32 | Deprecated |
| obsolete right part of brain | NF stage 22 to death | Deprecated |
| obsolete right part of branchial arch skeleton | NF stage 27 to death | Deprecated |
| obsolete rostral notochord | NF stage 12.5 to NF stage 66 | Deprecated |
| obsolete secondary vessel | undefined | Deprecated |
| obsolete spinal cord neuron | undefined | Deprecated |
| obsolete sucker | unspecified stage to NF stage 48 | Deprecated |
| obsolete superficial (epithelial) layer | undefined | Deprecated |
| occipital lateral line | NF stage 37 and 38 to death | |
| occipital region | NF stage 45 to death | |
| occipitovertebral artery | NF stage 41 to death |
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