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Summary Stage Literature (2200) Attributions Wiki
XB-STAGE-7

Papers associated with gastrula stage

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Tob1 is expressed in developing and adult gonads and is associated with the P-body marker, Dcp2., Shapouri F, Saeidi S, de Iongh RU, Casagranda F, Western PS, McLaughlin EA, Sutherland JM, Hime GR, Familari M., Cell Tissue Res. May 1, 2016; 364 (2): 443-51.

Transcription factors Mix1 and VegT, relocalization of vegt mRNA, and conserved endoderm and dorsal specification in frogs., Sudou N, Garcés-Vásconez A, López-Latorre MA, Taira M, Del Pino EM., Proc Natl Acad Sci U S A. May 17, 2016; 113 (20): 5628-33.                      

Neural transcription factors bias cleavage stage blastomeres to give rise to neural ectoderm., Gaur S, Mandelbaum M, Herold M, Majumdar HD, Neilson KM, Maynard TM, Mood K, Daar IO, Moody SA., Genesis. June 1, 2016; 54 (6): 334-49.                          

FoxH1 mediates a Grg4 and Smad2 dependent transcriptional switch in Nodal signaling during Xenopus mesoderm development., Reid CD, Steiner AB, Yaklichkin S, Lu Q, Wang S, Hennessy M, Kessler DS., Dev Biol. June 1, 2016; 414 (1): 34-44.                  

Tissue- and stage-specific Wnt target gene expression is controlled subsequent to β-catenin recruitment to cis-regulatory modules., Nakamura Y, de Paiva Alves E, Veenstra GJ, Hoppler S., Development. June 1, 2016; 143 (11): 1914-25.            

Bioelectric signalling via potassium channels: a mechanism for craniofacial dysmorphogenesis in KCNJ2-associated Andersen-Tawil Syndrome., Adams DS, Uzel SG, Akagi J, Wlodkowic D, Andreeva V, Yelick PC, Devitt-Lee A, Pare JF, Levin M., J Physiol. June 15, 2016; 594 (12): 3245-70.                              

Wide and high resolution tension measurement using FRET in embryo., Yamashita S, Tsuboi T, Ishinabe N, Kitaguchi T, Michiue T., Sci Rep. June 23, 2016; 6 28535.          

Secreted Frizzled-related Protein 2 (sFRP2) Redirects Non-canonical Wnt Signaling from Fz7 to Ror2 during Vertebrate Gastrulation., Brinkmann EM, Mattes B, Kumar R, Hagemann AI, Gradl D, Scholpp S, Steinbeisser H, Kaufmann LT, Özbek S., J Biol Chem. June 24, 2016; 291 (26): 13730-42.              

Maintenance of the Epithelial Barrier and Remodeling of Cell-Cell Junctions during Cytokinesis., Higashi T, Arnold TR, Stephenson RE, Dinshaw KM, Miller AL, Miller AL., Curr Biol. July 25, 2016; 26 (14): 1829-42.                

Syndecan4 coordinates Wnt/JNK and BMP signaling to regulate foregut progenitor development., Zhang Z, Zhang Z, Rankin SA, Rankin SA, Zorn AM., Dev Biol. August 1, 2016; 416 (1): 187-199.                                  

Nodal signalling in Xenopus: the role of Xnr5 in left/right asymmetry and heart development., Tadjuidje E, Kofron M, Mir A, Wylie C, Heasman J, Cha SW., Open Biol. August 1, 2016; 6 (8):             

Gtpbp2 is a positive regulator of Wnt signaling and maintains low levels of the Wnt negative regulator Axin., Gillis WQ, Kirmizitas A, Iwasaki Y, Ki DH, Wyrick JM, Thomsen GH., Cell Commun Signal. August 2, 2016; 14 (1): 15.              

The positive transcriptional elongation factor (P-TEFb) is required for neural crest specification., Hatch VL, Marin-Barba M, Moxon S, Ford CT, Ward NJ, Tomlinson ML, Desanlis I, Hendry AE, Hontelez S, van Kruijsbergen I, Veenstra GJ, Münsterberg AE, Wheeler GN., Dev Biol. August 15, 2016; 416 (2): 361-72.                                    

Ror2 signaling is required for local upregulation of GDF6 and activation of BMP signaling at the neural plate border., Schille C, Bayerlová M, Bleckmann A, Schambony A., Development. September 1, 2016; 143 (17): 3182-94.                          

The splicing factor SRSF1 modulates pattern formation by inhibiting transcription of tissue specific genes during embryogenesis., Lee SH, Lee HK, Lee HK, Kim C, Kim YK, Ismail T, Jeong Y, Park K, Park JW, Kwon OS, Kang BS, Lee DS, Park MJ, Park DS, Lee HS, Lee HS., Biochem Biophys Res Commun. September 2, 2016; 477 (4): 1011-1016.                

Capsaicin inhibits the Wnt/β-catenin signaling pathway by down-regulating PP2A., Park DS, Yoon GH, Lee HS, Choi SC., Biochem Biophys Res Commun. September 9, 2016; 478 (1): 455-461.              

The E3 ubiquitin ligase Hace1 is required for early embryonic development in Xenopus laevis., Iimura A, Yamazaki F, Suzuki T, Endo T, Nishida E, Kusakabe M., BMC Dev Biol. September 21, 2016; 16 (1): 31.                    

The histone methyltransferase Setd7 promotes pancreatic progenitor identity., Kofent J, Zhang J, Spagnoli FM., Development. October 1, 2016; 143 (19): 3573-3581.                        

Chronic effects of triclosan on embryonic development of Chinese toad, Bufo gargarizans., Chai L, Wang H, Zhao H, Deng H., Ecotoxicology. October 1, 2016; 25 (8): 1600-1608.

Expression of ribosomopathy genes during Xenopus tropicalis embryogenesis., Robson A, Owens ND, Baserga SJ, Khokha MK, Griffin JN., BMC Dev Biol. October 26, 2016; 16 (1): 38.                                      

EphA7 modulates apical constriction of hindbrain neuroepithelium during neurulation in Xenopus., Wang X, Sun J, Li C, Mao B., Biochem Biophys Res Commun. October 28, 2016; 479 (4): 759-765.        

The MLL/Setd1b methyltransferase is required for the Spemann's organizer gene activation in Xenopus., Lin H, Min Z, Tao Q, Tao Q., Mech Dev. November 1, 2016; 142 1-9.              

Tril targets Smad7 for degradation to allow hematopoietic specification in Xenopus embryos., Green YS, Kwon S, Mimoto MS, Xie Y, Christian JL., Development. November 1, 2016; 143 (21): 4016-4026.                            

Reversible optogenetic control of kinase activity during differentiation and embryonic development., Krishnamurthy VV, Khamo JS, Mei W, Turgeon AJ, Ashraf HM, Mondal P, Patel DB, Risner N, Cho EE, Yang J, Zhang K., Development. November 1, 2016; 143 (21): 4085-4094.          

Analysis of Cell Size in the Gastrula of Ten Frog Species Reveals a Correlation of Egg with Cell Sizes, and a Conserved Pattern of Small Cells in the Marginal Zone., Vargas A, Del Pino EM., J Exp Zool B Mol Dev Evol. January 1, 2017; 328 (1-2): 88-96.

Nemo-like kinase 1 (Nlk1) and paraxial protocadherin (PAPC) cooperatively control Xenopus gastrulation through regulation of Wnt/planar cell polarity (PCP) signaling., Kumar R, Ciprianidis A, Theiß S, Steinbeißer H, Kaufmann LT., Differentiation. January 1, 2017; 93 27-38.                            

Xenopus as a model for studies in mechanical stress and cell division., Stooke-Vaughan GA, Davidson LA, Davidson LA, Woolner S., Genesis. January 1, 2017; 55 (1-2):   

Tools for live imaging of active Rho GTPases in Xenopus., Stephenson RE, Miller AL, Miller AL., Genesis. January 1, 2017; 55 (1-2):       

Genome-wide analysis of canonical Wnt target gene regulation in Xenopus tropicalis challenges β-catenin paradigm., Nakamura Y, Hoppler S., Genesis. January 1, 2017; 55 (1-2):         

Functional differences between Tcf1 isoforms in early Xenopus development., Roël G, Van Den Broek O, Destrée O., Int J Dev Biol. January 1, 2017; 61 (1-2): 29-34.          

ADHFe1: a novel enzyme involved in retinoic acid-dependent Hox activation., Shabtai Y, Shukrun N, Fainsod A., Int J Dev Biol. January 1, 2017; 61 (3-4-5): 303-310.                  

FoxD1 protein interacts with Wnt and BMP signaling to differentially pattern mesoderm and neural tissue., Polevoy H, Malyarova A, Fonar Y, Elias S, Frank D., Int J Dev Biol. January 1, 2017; 61 (3-4-5): 293-302.              

Expression of the ALK1 family of type I BMP/ADMP receptors during gastrula stages in Xenopus embryos., Leibovich A, Steinbeißer H, Fainsod A., Int J Dev Biol. January 1, 2017; 61 (6-7): 465-470.            

Apolipoprotein C-I mediates Wnt/Ctnnb1 signaling during neural border formation and is required for neural crest development., Yokota C, Åstrand C, Takahashi S, Hagey DW, Stenman JM., Int J Dev Biol. January 1, 2017; 61 (6-7): 415-425.                      

Bioelectric regulation of innate immune system function in regenerating and intact Xenopus laevis., Paré JF, Martyniuk CJ, Levin M., NPJ Regen Med. January 1, 2017; 2 15.              

[Morphomechanical Factors in Gastrulation Process and Differentiation of Embryonic Tissue of Xenopus laevis]., Vasilegina YI, Kremnev SV, Nikishin DA., Ontogenez. January 1, 2017; 48 (1): 39-45.

[Role of Mechano-Dependent Cell Movements in the Establishment of Spatial Organization of Axial Rudiments in Xenopus laevis Embryos]., Bredov DV, Evstifeeva AU., Ontogenez. January 1, 2017; 48 (1): 21-7.

Tbx2 regulates anterior neural specification by repressing FGF signaling pathway., Cho GS, Park DS, Choi SC, Han JK., Dev Biol. January 15, 2017; 421 (2): 183-193.              

Histone H3 Lysine 27 Trimethylation Leads to Loss of Mesendodermal Competence During Gastrulation in Zebrafish Ectodermal Cells., Shiomi T, Muto A, Hozumi S, Kimura H, Kikuchi Y., Zoolog Sci. February 1, 2017; 34 (1): 64-71.

Ubiquitin C-terminal hydrolase37 regulates Tcf7 DNA binding for the activation of Wnt signalling., Han W, Lee H, Lee H, Han JK., Sci Rep. February 15, 2017; 7 42590.                        

A novel role of the organizer gene Goosecoid as an inhibitor of Wnt/PCP-mediated convergent extension in Xenopus and mouse., Ulmer B, Tingler M, Kurz S, Maerker M, Andre P, Mönch D, Campione M, Deißler K, Lewandoski M, Thumberger T, Schweickert A, Fainsod A, Steinbeißer H, Blum M., Sci Rep. February 21, 2017; 7 43010.                  

Automated mitotic spindle tracking suggests a link between spindle dynamics, spindle orientation, and anaphase onset in epithelial cells., Larson ME, Bement WM., Mol Biol Cell. March 15, 2017; 28 (6): 746-759.                          

Chromatin tethering to the nuclear envelope by nuclear actin filaments: a novel role of the actin cytoskeleton in the Xenopus blastula., Oda H, Shirai N, Ura N, Ohsumi K, Iwabuchi M., Genes Cells. April 1, 2017; 22 (4): 376-391.              

Spemann organizer transcriptome induction by early beta-catenin, Wnt, Nodal, and Siamois signals in Xenopus laevis., Ding Y, Ploper D, Sosa EA, Colozza G, Moriyama Y, Benitez MD, Zhang K, Merkurjev D, De Robertis EM., Proc Natl Acad Sci U S A. April 11, 2017; 114 (15): E3081-E3090.                        

FGF and canonical Wnt signaling cooperate to induce paraxial mesoderm from tailbud neuromesodermal progenitors through regulation of a two-step epithelial to mesenchymal transition., Goto H, Kimmey SC, Row RH, Matus DQ, Martin BL., Development. April 15, 2017; 144 (8): 1412-1424.

Brg1 chromatin remodeling ATPase balances germ layer patterning by amplifying the transcriptional burst at midblastula transition., Wagner G, Singhal N, Nicetto D, Straub T, Kremmer E, Rupp RAW., PLoS Genet. May 12, 2017; 13 (5): e1006757.                                    

A gene regulatory program controlling early Xenopus mesendoderm formation: Network conservation and motifs., Charney RM, Paraiso KD, Blitz IL, Cho KWY., Semin Cell Dev Biol. June 1, 2017; 66 12-24.    

Genome-wide analysis of dorsal and ventral transcriptomes of the Xenopus laevis gastrula., Ding Y, Colozza G, Zhang K, Moriyama Y, Ploper D, Sosa EA, Benitez MDJ, De Robertis EM., Dev Biol. June 15, 2017; 426 (2): 176-187.                                  

Genome-wide identification of Wnt/β-catenin transcriptional targets during Xenopus gastrulation., Kjolby RAS, Harland RM., Dev Biol. June 15, 2017; 426 (2): 165-175.                                    

Identification of new regulators of embryonic patterning and morphogenesis in Xenopus gastrulae by RNA sequencing., Popov IK, Kwon T, Crossman DK, Crowley MR, Wallingford JB, Chang C., Dev Biol. June 15, 2017; 426 (2): 429-441.                    

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