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Summary Stage Literature (2217) Attributions Wiki
XB-STAGE-7

Papers associated with gastrula stage

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Ingression-type cell migration drives vegetal endoderm internalisation in the Xenopus gastrula., Wen JW, Winklbauer R., Elife. August 10, 2017; 6   


An analysis of MyoD-dependent transcription using CRISPR/Cas9 gene targeting in Xenopus tropicalis embryos., McQueen C, Pownall ME., Mech Dev. August 1, 2017; 146 1-9.   


Nodal/Activin Pathway is a Conserved Neural Induction Signal in Chordates., Le Petillon Y, Luxardi G, Scerbo P, Cibois M, Leon A, Subirana L, Irimia M, Kodjabachian L, Escriva H, Bertrand S., Nat Ecol Evol. August 1, 2017; 1 (8): 1192-1200.   


ZC4H2 stabilizes Smads to enhance BMP signalling, which is involved in neural development in Xenopus., Ma P, Ren B, Yang X, Sun B, Liu X, Kong Q, Li C, Mao B., Open Biol. August 1, 2017; 7 (8):   


Sorting at embryonic boundaries requires high heterotypic interfacial tension., Canty L, Zarour E, Kashkooli L, François P, Fagotto F., Nat Commun. July 31, 2017; 8 (1): 157.   


H3K4 Methylation-Dependent Memory of Somatic Cell Identity Inhibits Reprogramming and Development of Nuclear Transfer Embryos., Hörmanseder E, Simeone A, Allen GE, Bradshaw CR, Figlmüller M, Gurdon J, Jullien J., Cell Stem Cell. July 6, 2017; 21 (1): 135-143.e6.   


Id genes are essential for early heart formation., Cunningham TJ, Yu MS, McKeithan WL, Spiering S, Carrette F, Huang CT, Bushway PJ, Tierney M, Albini S, Giacca M, Mano M, Puri PL, Sacco A, Ruiz-Lozano P, Riou JF, Umbhauer M, Duester G, Mercola M, Colas AR., Genes Dev. July 1, 2017; 31 (13): 1325-1338.   


Lineage commitment of embryonic cells involves MEK1-dependent clearance of pluripotency regulator Ventx2., Scerbo P, Marchal L, Kodjabachian L., Elife. June 27, 2017; 6   


Genome-wide analysis of dorsal and ventral transcriptomes of the Xenopus laevis gastrula., Ding Y, Colozza G, Zhang K, Moriyama Y, Ploper D, Sosa EA, Benitez MDJ, De Robertis EM., Dev Biol. June 15, 2017; 426 (2): 176-187.   


Genome-wide identification of Wnt/β-catenin transcriptional targets during Xenopus gastrulation., Kjolby RAS, Harland RM., Dev Biol. June 15, 2017; 426 (2): 165-175.   


Identification of new regulators of embryonic patterning and morphogenesis in Xenopus gastrulae by RNA sequencing., Popov IK, Kwon T, Crossman DK, Crowley MR, Wallingford JB, Chang C., Dev Biol. June 15, 2017; 426 (2): 429-441.   


Developmentally regulated long non-coding RNAs in Xenopus tropicalis., Forouzmand E, Owens NDL, Blitz IL, Paraiso KD, Khokha MK, Gilchrist MJ, Xie X, Cho KWY., Dev Biol. June 15, 2017; 426 (2): 401-408.   


A catalog of Xenopus tropicalis transcription factors and their regional expression in the early gastrula stage embryo., Blitz IL, Paraiso KD, Patrushev I, Chiu WTY, Cho KWY, Gilchrist MJ., Dev Biol. June 15, 2017; 426 (2): 409-417.   


Identification and comparative analyses of Siamois cluster genes in Xenopus laevis and tropicalis., Haramoto Y, Saijyo T, Tanaka T, Furuno N, Suzuki A, Ito Y, Kondo M, Taira M, Takahashi S., Dev Biol. June 15, 2017; 426 (2): 374-383.   


Heterochromatic histone modifications at transposons in Xenopus tropicalis embryos., van Kruijsbergen I, Hontelez S, Elurbe DM, van Heeringen SJ, Huynen MA, Veenstra GJC., Dev Biol. June 15, 2017; 426 (2): 460-471.

High variability of expression profiles of homeologous genes for Wnt, Hh, Notch, and Hippo signaling pathways in Xenopus laevis., Michiue T, Yamamoto T, Yasuoka Y, Goto T, Ikeda T, Nagura K, Nakayama T, Taira M, Kinoshita T., Dev Biol. June 15, 2017; 426 (2): 270-290.   


The phosphatase Pgam5 antagonizes Wnt/β-Catenin signaling in embryonic anterior-posterior axis patterning., Rauschenberger V, Bernkopf DB, Krenn S, Jalal K, Heller J, Behrens J, Gentzel M, Schambony A., Development. June 15, 2017; 144 (12): 2234-2247.   


A gene regulatory program controlling early Xenopus mesendoderm formation: Network conservation and motifs., Charney RM, Paraiso KD, Blitz IL, Cho KWY., Semin Cell Dev Biol. June 1, 2017; 66 12-24.   


Brg1 chromatin remodeling ATPase balances germ layer patterning by amplifying the transcriptional burst at midblastula transition., Wagner G, Singhal N, Nicetto D, Straub T, Kremmer E, Rupp RAW., PLoS Genet. May 12, 2017; 13 (5): e1006757.   


FGF and canonical Wnt signaling cooperate to induce paraxial mesoderm from tailbud neuromesodermal progenitors through regulation of a two-step epithelial to mesenchymal transition., Goto H, Kimmey SC, Row RH, Matus DQ, Martin BL., Development. April 15, 2017; 144 (8): 1412-1424.

Spemann organizer transcriptome induction by early beta-catenin, Wnt, Nodal, and Siamois signals in Xenopus laevis., Ding Y, Ploper D, Sosa EA, Colozza G, Moriyama Y, Benitez MD, Zhang K, Merkurjev D, De Robertis EM., Proc Natl Acad Sci U S A. April 11, 2017; 114 (15): E3081-E3090.   


Chromatin tethering to the nuclear envelope by nuclear actin filaments: a novel role of the actin cytoskeleton in the Xenopus blastula., Oda H, Shirai N, Ura N, Ohsumi K, Iwabuchi M., Genes Cells. April 1, 2017; 22 (4): 376-391.   


Automated mitotic spindle tracking suggests a link between spindle dynamics, spindle orientation, and anaphase onset in epithelial cells., Larson ME, Bement WM., Mol Biol Cell. March 15, 2017; 28 (6): 746-759.   


A novel role of the organizer gene Goosecoid as an inhibitor of Wnt/PCP-mediated convergent extension in Xenopus and mouse., Ulmer B, Tingler M, Kurz S, Maerker M, Andre P, Mönch D, Campione M, Deißler K, Lewandoski M, Thumberger T, Schweickert A, Fainsod A, Steinbeißer H, Blum M., Sci Rep. February 21, 2017; 7 43010.   


Ubiquitin C-terminal hydrolase37 regulates Tcf7 DNA binding for the activation of Wnt signalling., Han W, Lee H, Lee H, Han JK., Sci Rep. February 15, 2017; 7 42590.   


Histone H3 Lysine 27 Trimethylation Leads to Loss of Mesendodermal Competence During Gastrulation in Zebrafish Ectodermal Cells., Shiomi T, Muto A, Hozumi S, Kimura H, Kikuchi Y., Zoolog Sci. February 1, 2017; 34 (1): 64-71.

Tbx2 regulates anterior neural specification by repressing FGF signaling pathway., Cho GS, Park DS, Choi SC, Han JK., Dev Biol. January 15, 2017; 421 (2): 183-193.   


Analysis of Cell Size in the Gastrula of Ten Frog Species Reveals a Correlation of Egg with Cell Sizes, and a Conserved Pattern of Small Cells in the Marginal Zone., Vargas A, Del Pino EM., J Exp Zool B Mol Dev Evol. January 1, 2017; 328 (1-2): 88-96.

Nemo-like kinase 1 (Nlk1) and paraxial protocadherin (PAPC) cooperatively control Xenopus gastrulation through regulation of Wnt/planar cell polarity (PCP) signaling., Kumar R, Ciprianidis A, Theiß S, Steinbeißer H, Kaufmann LT., Differentiation. January 1, 2017; 93 27-38.   


Xenopus as a model for studies in mechanical stress and cell division., Stooke-Vaughan GA, Davidson LA, Davidson LA, Woolner S., Genesis. January 1, 2017; 55 (1-2):   

Tools for live imaging of active Rho GTPases in Xenopus., Stephenson RE, Miller AL, Miller AL., Genesis. January 1, 2017; 55 (1-2):   


Genome-wide analysis of canonical Wnt target gene regulation in Xenopus tropicalis challenges β-catenin paradigm., Nakamura Y, Hoppler S., Genesis. January 1, 2017; 55 (1-2):   


Functional differences between Tcf1 isoforms in early Xenopus development., Roël G, Van Den Broek O, Destrée O., Int J Dev Biol. January 1, 2017; 61 (1-2): 29-34.   


ADHFe1: a novel enzyme involved in retinoic acid-dependent Hox activation., Shabtai Y, Shukrun N, Fainsod A., Int J Dev Biol. January 1, 2017; 61 (3-4-5): 303-310.   


FoxD1 protein interacts with Wnt and BMP signaling to differentially pattern mesoderm and neural tissue., Polevoy H, Malyarova A, Fonar Y, Elias S, Frank D., Int J Dev Biol. January 1, 2017; 61 (3-4-5): 293-302.   


Expression of the ALK1 family of type I BMP/ADMP receptors during gastrula stages in Xenopus embryos., Leibovich A, Steinbeißer H, Fainsod A., Int J Dev Biol. January 1, 2017; 61 (6-7): 465-470.   


Apolipoprotein C-I mediates Wnt/Ctnnb1 signaling during neural border formation and is required for neural crest development., Yokota C, Åstrand C, Takahashi S, Hagey DW, Stenman JM., Int J Dev Biol. January 1, 2017; 61 (6-7): 415-425.   


Bioelectric regulation of innate immune system function in regenerating and intact Xenopus laevis., Paré JF, Martyniuk CJ, Levin M., NPJ Regen Med. January 1, 2017; 2 15.   


[Morphomechanical Factors in Gastrulation Process and Differentiation of Embryonic Tissue of Xenopus laevis]., Vasilegina YI, Kremnev SV, Nikishin DA., Ontogenez. January 1, 2017; 48 (1): 39-45.

[Role of Mechano-Dependent Cell Movements in the Establishment of Spatial Organization of Axial Rudiments in Xenopus laevis Embryos]., Bredov DV, Evstifeeva AU., Ontogenez. January 1, 2017; 48 (1): 21-7.

The MLL/Setd1b methyltransferase is required for the Spemann's organizer gene activation in Xenopus., Lin H, Min Z, Tao Q, Tao Q., Mech Dev. November 1, 2016; 142 1-9.   


Tril targets Smad7 for degradation to allow hematopoietic specification in Xenopus embryos., Green YS, Kwon S, Mimoto MS, Xie Y, Christian JL., Development. November 1, 2016; 143 (21): 4016-4026.   


Reversible optogenetic control of kinase activity during differentiation and embryonic development., Krishnamurthy VV, Khamo JS, Mei W, Turgeon AJ, Ashraf HM, Mondal P, Patel DB, Risner N, Cho EE, Yang J, Zhang K., Development. November 1, 2016; 143 (21): 4085-4094.   


EphA7 modulates apical constriction of hindbrain neuroepithelium during neurulation in Xenopus., Wang X, Sun J, Li C, Mao B., Biochem Biophys Res Commun. October 28, 2016; 479 (4): 759-765.   


Expression of ribosomopathy genes during Xenopus tropicalis embryogenesis., Robson A, Owens ND, Baserga SJ, Khokha MK, Griffin JN., BMC Dev Biol. October 26, 2016; 16 (1): 38.   


The histone methyltransferase Setd7 promotes pancreatic progenitor identity., Kofent J, Zhang J, Spagnoli FM., Development. October 1, 2016; 143 (19): 3573-3581.   


Chronic effects of triclosan on embryonic development of Chinese toad, Bufo gargarizans., Chai L, Wang H, Zhao H, Deng H., Ecotoxicology. October 1, 2016; 25 (8): 1600-1608.

The E3 ubiquitin ligase Hace1 is required for early embryonic development in Xenopus laevis., Iimura A, Yamazaki F, Suzuki T, Endo T, Nishida E, Kusakabe M., BMC Dev Biol. September 21, 2016; 16 (1): 31.   


Capsaicin inhibits the Wnt/β-catenin signaling pathway by down-regulating PP2A., Park DS, Yoon GH, Lee HS, Choi SC., Biochem Biophys Res Commun. September 9, 2016; 478 (1): 455-461.   


The splicing factor SRSF1 modulates pattern formation by inhibiting transcription of tissue specific genes during embryogenesis., Lee SH, Lee HK, Lee HK, Kim C, Kim YK, Ismail T, Jeong Y, Park K, Park JW, Kwon OS, Kang BS, Lee DS, Park MJ, Park DS, Lee HS, Lee HS., Biochem Biophys Res Commun. September 2, 2016; 477 (4): 1011-1016.   

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