Papers associated with primary germ layer (and grn)

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	Quantitative analysis of transcriptome dynamics provides novel insights into developmental state transitions., Johnson K., BMC Genomics. October 23, 2022; 23 (1): 723.
	Uncovering the mesendoderm gene regulatory network through multi-omic data integration., Jansen C., Cell Rep. February 15, 2022; 38 (7): 110364.
	Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endoderm gene regulatory network., Mukherjee S., Elife. September 7, 2020; 9
	Gene Regulatory Networks Governing the Generation and Regeneration of Blood., Ciau-Uitz A., J Comput Biol. July 1, 2019; 26 (7): 719-725.
	Etv6 activates vegfa expression through positive and negative transcriptional regulatory networks in Xenopus embryos., Li L., Nat Commun. March 6, 2019; 10 (1): 1083.
	The neural border: Induction, specification and maturation of the territory that generates neural crest cells., Pla P., Dev Biol. December 1, 2018; 444 Suppl 1 S36-S46.
	PFKFB4 control of AKT signaling is essential for premigratory and migratory neural crest formation., Figueiredo AL., Development. November 15, 2017; 144 (22): 4183-4194.
	Dissecting BMP signaling input into the gene regulatory networks driving specification of the blood stem cell lineage., Kirmizitas A., Proc Natl Acad Sci U S A. June 6, 2017; 114 (23): 5814-5821.
	A gene regulatory program controlling early Xenopus mesendoderm formation: Network conservation and motifs., Charney RM., Semin Cell Dev Biol. June 1, 2017; 66 12-24.
	Multicellular Mathematical Modelling of Mesendoderm Formation in Amphibians., Brown LE., Bull Math Biol. March 1, 2016; 78 (3): 436-67.
	Gene regulatory networks governing lung specification., Rankin SA, Rankin SA., J Cell Biochem. August 1, 2014; 115 (8): 1343-50.
	Two different network topologies yield bistability in models of mesoderm and anterior mesendoderm specification in amphibians., Brown LE., J Theor Biol. July 21, 2014; 353 67-77.
	MiR-142-3p controls the specification of definitive hemangioblasts during ontogeny., Nimmo R., Dev Cell. August 12, 2013; 26 (3): 237-49.
	VEGFA-dependent and -independent pathways synergise to drive Scl expression and initiate programming of the blood stem cell lineage in Xenopus., Ciau-Uitz A., Development. June 1, 2013; 140 (12): 2632-42.
	sfrp1 promotes cardiomyocyte differentiation in Xenopus via negative-feedback regulation of Wnt signalling., Gibb N., Development. April 1, 2013; 140 (7): 1537-49.
	Induction of the neural crest state: control of stem cell attributes by gene regulatory, post-transcriptional and epigenetic interactions., Prasad MS., Dev Biol. June 1, 2012; 366 (1): 10-21.
	The LIM adaptor protein LMO4 is an essential regulator of neural crest development., Ochoa SD., Dev Biol. January 15, 2012; 361 (2): 313-25.
	Conservation and diversification of an ancestral chordate gene regulatory network for dorsoventral patterning., Kozmikova I., PLoS One. February 3, 2011; 6 (2): e14650.
	A conserved mechanism for vertebrate mesoderm specification in urodele amphibians and mammals., Swiers G., Dev Biol. July 1, 2010; 343 (1-2): 138-52.
	Notch signaling, wt1 and foxc2 are key regulators of the podocyte gene regulatory network in Xenopus., White JT., Development. June 1, 2010; 137 (11): 1863-73.
	Olfactory and lens placode formation is controlled by the hedgehog-interacting protein (Xhip) in Xenopus., Cornesse Y., Dev Biol. January 15, 2005; 277 (2): 296-315.
	Exploration of the extracellular space by a large-scale secretion screen in the early Xenopus embryo., Pera EM., Int J Dev Biol. January 1, 2005; 49 (7): 781-96.
	A genetic regulatory network for Xenopus mesendoderm formation., Loose M., Dev Biol. July 15, 2004; 271 (2): 467-78.

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