Papers associated with primary germ layer (and foxa1)

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	A single-cell, time-resolved profiling of Xenopus mucociliary epithelium reveals nonhierarchical model of development., Lee J., Sci Adv. April 7, 2023; 9 (14): eadd5745.
	Retinoic acid control of pax8 during renal specification of Xenopus pronephros involves hox and meis3., Durant-Vesga J., Dev Biol. January 1, 2023; 493 17-28.
	The homeodomain transcription factor Ventx2 regulates respiratory progenitor cell number and differentiation timing during Xenopus lung development., Rankin SA, Rankin SA., Dev Growth Differ. September 1, 2022; 64 (7): 347-361.
	Mapping single-cell atlases throughout Metazoa unravels cell type evolution., Tarashansky AJ., Elife. May 4, 2021; 10
	Combinatorial transcription factor activities on open chromatin induce embryonic heterogeneity in vertebrates., Bright AR., EMBO J. May 3, 2021; 40 (9): e104913.
	Xenopus epidermal and endodermal epithelia as models for mucociliary epithelial evolution, disease, and metaplasia., Walentek P., Genesis. February 1, 2021; 59 (1-2): e23406.
	Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endoderm gene regulatory network., Mukherjee S., Elife. September 7, 2020; 9
	ΔN-Tp63 Mediates Wnt/β-Catenin-Induced Inhibition of Differentiation in Basal Stem Cells of Mucociliary Epithelia., Haas M., Cell Rep. September 24, 2019; 28 (13): 3338-3352.e6.
	Timing is everything: Reiterative Wnt, BMP and RA signaling regulate developmental competence during endoderm organogenesis., Rankin SA, Rankin SA., Dev Biol. February 1, 2018; 434 (1): 121-132.
	Manipulating and Analyzing Cell Type Composition of the Xenopus Mucociliary Epidermis., Walentek P., Methods Mol Biol. January 1, 2018; 1865 251-263.
	A catalog of Xenopus tropicalis transcription factors and their regional expression in the early gastrula stage embryo., Blitz IL., Dev Biol. June 15, 2017; 426 (2): 409-417.
	The role of nitric oxide during embryonic epidermis development of Xenopus laevis., Tomankova S., Biol Open. June 15, 2017; 6 (6): 862-871.
	A gene regulatory program controlling early Xenopus mesendoderm formation: Network conservation and motifs., Charney RM., Semin Cell Dev Biol. June 1, 2017; 66 12-24.
	What we can learn from a tadpole about ciliopathies and airway diseases: Using systems biology in Xenopus to study cilia and mucociliary epithelia., Walentek P., Genesis. January 1, 2017; 55 (1-2):
	A Retinoic Acid-Hedgehog Cascade Coordinates Mesoderm-Inducing Signals and Endoderm Competence during Lung Specification., Rankin SA, Rankin SA., Cell Rep. June 28, 2016; 16 (1): 66-78.
	Ptbp1 and Exosc9 knockdowns trigger skin stability defects through different pathways., Noiret M., Dev Biol. January 15, 2016; 409 (2): 489-501.
	ATP4a is required for development and function of the Xenopus mucociliary epidermis - a potential model to study proton pump inhibitor-associated pneumonia., Walentek P., Dev Biol. December 15, 2015; 408 (2): 292-304.
	BMP signalling controls the construction of vertebrate mucociliary epithelia., Cibois M., Development. July 1, 2015; 142 (13): 2352-63.
	Hhex and Cer1 mediate the Sox17 pathway for cardiac mesoderm formation in embryonic stem cells., Liu Y., Stem Cells. June 1, 2014; 32 (6): 1515-26.
	A secretory cell type develops alongside multiciliated cells, ionocytes and goblet cells, and provides a protective, anti-infective function in the frog embryonic mucociliary epidermis., Dubaissi E., Development. April 1, 2014; 141 (7): 1514-25.
	A novel serotonin-secreting cell type regulates ciliary motility in the mucociliary epidermis of Xenopus tadpoles., Walentek P., Development. April 1, 2014; 141 (7): 1526-33.
	Inference of the Xenopus tropicalis embryonic regulatory network and spatial gene expression patterns., Zheng Z., BMC Syst Biol. January 8, 2014; 8 3.
	Suppression of Bmp4 signaling by the zinc-finger repressors Osr1 and Osr2 is required for Wnt/β-catenin-mediated lung specification in Xenopus., Rankin SA, Rankin SA., Development. August 1, 2012; 139 (16): 3010-20.
	Waif1/5T4 inhibits Wnt/β-catenin signaling and activates noncanonical Wnt pathways by modifying LRP6 subcellular localization., Kagermeier-Schenk B., Dev Cell. December 13, 2011; 21 (6): 1129-43.
	A revised model of Xenopus dorsal midline development: differential and separable requirements for Notch and Shh signaling., Peyrot SM., Dev Biol. April 15, 2011; 352 (2): 254-66.
	Specification of ion transport cells in the Xenopus larval skin., Quigley IK., Development. February 1, 2011; 138 (4): 705-14.
	Appl1 is essential for the survival of Xenopus pancreas, duodenum, and stomach progenitor cells., Wen L., Dev Dyn. August 1, 2010; 239 (8): 2198-207.
	Identification of novel ciliogenesis factors using a new in vivo model for mucociliary epithelial development., Hayes JM., Dev Biol. December 1, 2007; 312 (1): 115-30.
	Neural crests are actively precluded from the anterior neural fold by a novel inhibitory mechanism dependent on Dickkopf1 secreted by the prechordal mesoderm., Carmona-Fontaine C., Dev Biol. September 15, 2007; 309 (2): 208-21.
	Accelerated gene evolution and subfunctionalization in the pseudotetraploid frog Xenopus laevis., Hellsten U., BMC Biol. July 25, 2007; 5 31.
	Combined ectopic expression of Pdx1 and Ptf1a/p48 results in the stable conversion of posterior endoderm into endocrine and exocrine pancreatic tissue., Afelik S., Genes Dev. June 1, 2006; 20 (11): 1441-6.
	Global analysis of the transcriptional network controlling Xenopus endoderm formation., Sinner D., Development. May 1, 2006; 133 (10): 1955-66.
	Genomic profiling of mixer and Sox17beta targets during Xenopus endoderm development., Dickinson K., Dev Dyn. February 1, 2006; 235 (2): 368-81.
	Identification of novel genes affecting mesoderm formation and morphogenesis through an enhanced large scale functional screen in Xenopus., Chen JA., Mech Dev. March 1, 2005; 122 (3): 307-31.
	Global analysis of RAR-responsive genes in the Xenopus neurula using cDNA microarrays., Arima K., Dev Dyn. February 1, 2005; 232 (2): 414-31.
	Of Fox and Frogs: Fox (fork head/winged helix) transcription factors in Xenopus development., Pohl BS., Gene. January 3, 2005; 344 21-32.
	Sox17 and beta-catenin cooperate to regulate the transcription of endodermal genes., Sinner D., Development. July 1, 2004; 131 (13): 3069-80.
	Molecular components of the endoderm specification pathway in Xenopus tropicalis., D'Souza A., Dev Dyn. January 1, 2003; 226 (1): 118-27.
	Ras-mediated FGF signaling is required for the formation of posterior but not anterior neural tissue in Xenopus laevis., Ribisi S., Dev Biol. November 1, 2000; 227 (1): 183-96.
	Endoderm patterning by the notochord: development of the hypochord in Xenopus., Cleaver O., Development. February 1, 2000; 127 (4): 869-79.
	Hepatocyte nuclear factor 3 relieves chromatin-mediated repression of the alpha-fetoprotein gene., Crowe AJ., J Biol Chem. August 27, 1999; 274 (35): 25113-20.
	XFKH2, a Xenopus HNF-3 alpha homologue, exhibits both activin-inducible and autonomous phases of expression in early embryos., Bolce ME., Dev Biol. December 1, 1993; 160 (2): 413-23.
	Sequential expression of HNF-3 beta and HNF-3 alpha by embryonic organizing centers: the dorsal lip/node, notochord and floor plate., Ruiz i Altaba A., Mech Dev. December 1, 1993; 44 (2-3): 91-108.

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