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Summary Anatomy Item Literature (6278) Expression Attributions Wiki
XB-ANAT-475

Papers associated with primary germ layer (and mix1)

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Regulation of gene expression downstream of a novel Fgf/Erk pathway during Xenopus development., Cowell LM., PLoS One. January 1, 2023; 18 (10): e0286040.                                  

Membrane potential drives the exit from pluripotency and cell fate commitment via calcium and mTOR., Sempou E., Nat Commun. November 5, 2022; 13 (1): 6681.                                            

Quantitative analysis of transcriptome dynamics provides novel insights into developmental state transitions., Johnson K., BMC Genomics. October 23, 2022; 23 (1): 723.                                  

HMCES modulates the transcriptional regulation of nodal/activin and BMP signaling in mESCs., Liang T., Cell Rep. July 12, 2022; 40 (2): 111038.                              

Temporal transcriptomic profiling reveals dynamic changes in gene expression of Xenopus animal cap upon activin treatment., Satou-Kobayashi Y., Sci Rep. July 15, 2021; 11 (1): 14537.          

Combinatorial transcription factor activities on open chromatin induce embryonic heterogeneity in vertebrates., Bright AR., EMBO J. May 3, 2021; 40 (9): e104913.                        

Segregation of brain and organizer precursors is differentially regulated by Nodal signaling at blastula stage., Castro Colabianchi AM., Biol Open. February 25, 2021; 10 (2):                 

Dusp1 modulates activin/smad2 mediated germ layer specification via FGF signal inhibition in Xenopus embryos., Umair Z., Anim Cells Syst (Seoul). November 27, 2020; 24 (6): 359-370.            

Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endoderm gene regulatory network., Mukherjee S., Elife. September 7, 2020; 9                           

Endodermal Maternal Transcription Factors Establish Super-Enhancers during Zygotic Genome Activation., Paraiso KD., Cell Rep. June 4, 2019; 27 (10): 2962-2977.e5.                          

A catalog of Xenopus tropicalis transcription factors and their regional expression in the early gastrula stage embryo., Blitz IL., Dev Biol. June 15, 2017; 426 (2): 409-417.        

A gene regulatory program controlling early Xenopus mesendoderm formation: Network conservation and motifs., Charney RM., Semin Cell Dev Biol. June 1, 2017; 66 12-24.    

Transcription factors Mix1 and VegT, relocalization of vegt mRNA, and conserved endoderm and dorsal specification in frogs., Sudou N., Proc Natl Acad Sci U S A. May 17, 2016; 113 (20): 5628-33.                      

Genome-wide view of TGFβ/Foxh1 regulation of the early mesendoderm program., Chiu WT., Development. December 1, 2014; 141 (23): 4537-47.                                  

Gtpbp2 is required for BMP signaling and mesoderm patterning in Xenopus embryos., Kirmizitas A., Dev Biol. August 15, 2014; 392 (2): 358-67.                                

Inference of the Xenopus tropicalis embryonic regulatory network and spatial gene expression patterns., Zheng Z., BMC Syst Biol. January 8, 2014; 8 3.                  

The Xenopus Tgfbi is required for embryogenesis through regulation of canonical Wnt signalling., Wang F., Dev Biol. July 1, 2013; 379 (1): 16-27.                            

Optimal histone H3 to linker histone H1 chromatin ratio is vital for mesodermal competence in Xenopus., Lim CY., Development. February 1, 2013; 140 (4): 853-60.                                              

Klf4 is required for germ-layer differentiation and body axis patterning during Xenopus embryogenesis., Cao Q., Development. November 1, 2012; 139 (21): 3950-61.                  

Signaling crosstalk between TGFβ and Dishevelled/Par1b., Mamidi A., Cell Death Differ. October 1, 2012; 19 (10): 1689-97.                    

Conservation and evolutionary divergence in the activity of receptor-regulated smads., Sorrentino GM., Evodevo. October 1, 2012; 3 (1): 22.              

Self-regulation of the head-inducing properties of the Spemann organizer., Inui M., Proc Natl Acad Sci U S A. September 18, 2012; 109 (38): 15354-9.                            

The Mix family of homeobox genes--key regulators of mesendoderm formation during vertebrate development., Pereira LA., Dev Biol. July 15, 2012; 367 (2): 163-77.        

A developmental requirement for HIRA-dependent H3.3 deposition revealed at gastrulation in Xenopus., Szenker E., Cell Rep. June 28, 2012; 1 (6): 730-40.                                      

Dynamic in vivo binding of transcription factors to cis-regulatory modules of cer and gsc in the stepwise formation of the Spemann-Mangold organizer., Sudou N., Development. May 1, 2012; 139 (9): 1651-61.                  

KDEL tagging: a method for generating dominant-negative inhibitors of the secretion of TGF-beta superfamily proteins., Matsukawa S., Int J Dev Biol. January 1, 2012; 56 (5): 351-6.        

A gene regulatory network controlling hhex transcription in the anterior endoderm of the organizer., Rankin SA, Rankin SA., Dev Biol. March 15, 2011; 351 (2): 297-310.                            

Identification of a novel negative regulator of activin/nodal signaling in mesendodermal formation of Xenopus embryos., Cheong SM., J Biol Chem. June 19, 2009; 284 (25): 17052-60.                        

Oct25 represses transcription of nodal/activin target genes by interaction with signal transducers during Xenopus gastrulation., Cao Y., J Biol Chem. December 5, 2008; 283 (49): 34168-77.                

Mix.1/2-dependent control of FGF availability during gastrulation is essential for pronephros development in Xenopus., Colas A., Dev Biol. August 15, 2008; 320 (2): 351-65.                  

Control of gastrula cell motility by the Goosecoid/Mix.1/ Siamois network: basic patterns and paradoxical effects., Luu O., Dev Dyn. May 1, 2008; 237 (5): 1307-20.

Expression of Siamois and Twin in the blastula Chordin/Noggin signaling center is required for brain formation in Xenopus laevis embryos., Ishibashi H., Mech Dev. January 1, 2008; 125 (1-2): 58-66.              

Mouse homologues of Shisa antagonistic to Wnt and Fgf signalings., Furushima K., Dev Biol. June 15, 2007; 306 (2): 480-92.  

Negative regulation of Activin/Nodal signaling by SRF during Xenopus gastrulation., Yun CH., Development. February 1, 2007; 134 (4): 769-77.              

Xenopus glucose transporter 1 (xGLUT1) is required for gastrulation movement in Xenopus laevis., Suzawa K., Int J Dev Biol. January 1, 2007; 51 (3): 183-90.              

Xenopus Dab2 is required for embryonic angiogenesis., Cheong SM., BMC Dev Biol. December 19, 2006; 6 63.                  

Amino terminal tyrosine phosphorylation of human MIXL1., Guo W., J Mol Signal. December 5, 2006; 1 6.          

A role for GATA factors in Xenopus gastrulation movements., Fletcher G., Mech Dev. October 1, 2006; 123 (10): 730-45.    

Global analysis of the transcriptional network controlling Xenopus endoderm formation., Sinner D., Development. May 1, 2006; 133 (10): 1955-66.              

Determination of the minimal domains of Mix.3/Mixer required for endoderm development., Doherty JR., Mech Dev. January 1, 2006; 123 (1): 56-66.                  

Germ-layer specification and control of cell growth by Ectodermin, a Smad4 ubiquitin ligase., Dupont S., Cell. April 8, 2005; 121 (1): 87-99.                                  

The ARID domain protein dril1 is necessary for TGF(beta) signaling in Xenopus embryos., Callery EM., Dev Biol. February 15, 2005; 278 (2): 542-59.                              

Shisa promotes head formation through the inhibition of receptor protein maturation for the caudalizing factors, Wnt and FGF., Yamamoto A., Cell. January 28, 2005; 120 (2): 223-35.                      

Patterning and tissue movements in a novel explant preparation of the marginal zone of Xenopus laevis., Davidson LA., Gene Expr Patterns. July 1, 2004; 4 (4): 457-66.        

Selective degradation of excess Ldb1 by Rnf12/RLIM confers proper Ldb1 expression levels and Xlim-1/Ldb1 stoichiometry in Xenopus organizer functions., Hiratani I., Development. September 1, 2003; 130 (17): 4161-75.                    

Molecular components of the endoderm specification pathway in Xenopus tropicalis., D'Souza A., Dev Dyn. January 1, 2003; 226 (1): 118-27.                            

Molecular regulation of vertebrate early endoderm development., Shivdasani RA., Dev Biol. September 15, 2002; 249 (2): 191-203.      

Effects of heterodimerization and proteolytic processing on Derrière and Nodal activity: implications for mesoderm induction in Xenopus., Eimon PM., Development. July 1, 2002; 129 (13): 3089-103.          

A human Mix-like homeobox gene MIXL shows functional similarity to Xenopus Mix.1., Guo W., Blood. July 1, 2002; 100 (1): 89-95.

The role of a Williams-Beuren syndrome-associated helix-loop-helix domain-containing transcription factor in activin/nodal signaling., Ring C., Genes Dev. April 1, 2002; 16 (7): 820-35.    

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