Papers associated with primary germ layer (and sox17b.1)

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	Retinoic acid control of pax8 during renal specification of Xenopus pronephros involves hox and meis3., Durant-Vesga J., Dev Biol. January 1, 2023; 493 17-28.
	Genetically programmed retinoic acid deficiency during gastrulation phenocopies most known developmental defects due to acute prenatal alcohol exposure in FASD., Petrelli B., Front Cell Dev Biol. January 1, 2023; 11 1208279.
	Regulation of gene expression downstream of a novel Fgf/Erk pathway during Xenopus development., Cowell LM., PLoS One. January 1, 2023; 18 (10): e0286040.
	Membrane potential drives the exit from pluripotency and cell fate commitment via calcium and mTOR., Sempou E., Nat Commun. November 5, 2022; 13 (1): 6681.
	Quantitative analysis of transcriptome dynamics provides novel insights into developmental state transitions., Johnson K., BMC Genomics. October 23, 2022; 23 (1): 723.
	Uncovering the mesendoderm gene regulatory network through multi-omic data integration., Jansen C., Cell Rep. February 15, 2022; 38 (7): 110364.
	Abnormal left-right organizer and laterality defects in Xenopus embryos after formin inhibitor SMIFH2 treatment., Petri N., PLoS One. January 1, 2022; 17 (11): e0275164.
	Huntingtin CAG expansion impairs germ layer patterning in synthetic human 2D gastruloids through polarity defects., Galgoczi S., Development. October 1, 2021; 148 (19):
	Combinatorial transcription factor activities on open chromatin induce embryonic heterogeneity in vertebrates., Bright AR., EMBO J. May 3, 2021; 40 (9): e104913.
	Dusp1 modulates activin/smad2 mediated germ layer specification via FGF signal inhibition in Xenopus embryos., Umair Z., Anim Cells Syst (Seoul). November 27, 2020; 24 (6): 359-370.
	Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endoderm gene regulatory network., Mukherjee S., Elife. September 7, 2020; 9
	Endodermal Maternal Transcription Factors Establish Super-Enhancers during Zygotic Genome Activation., Paraiso KD., Cell Rep. June 4, 2019; 27 (10): 2962-2977.e5.
	Liver Specification in the Absence of Cardiac Differentiation Revealed by Differential Sensitivity to Wnt/β Catenin Pathway Activation., Haworth K., Front Physiol. January 1, 2019; 10 155.
	Tbx2 is required for the suppression of mesendoderm during early Xenopus development., Teegala S., Dev Dyn. July 1, 2018; 247 (7): 903-913.
	Maternal Gdf3 is an obligatory cofactor in Nodal signaling for embryonic axis formation in zebrafish., Bisgrove BW., Elife. November 15, 2017; 6
	Wbp2nl has a developmental role in establishing neural and non-neural ectodermal fates., Marchak A., Dev Biol. September 1, 2017; 429 (1): 213-224.
	H3K4 Methylation-Dependent Memory of Somatic Cell Identity Inhibits Reprogramming and Development of Nuclear Transfer Embryos., Hörmanseder E., Cell Stem Cell. July 6, 2017; 21 (1): 135-143.e6.
	A catalog of Xenopus tropicalis transcription factors and their regional expression in the early gastrula stage embryo., Blitz IL., Dev Biol. June 15, 2017; 426 (2): 409-417.
	A gene regulatory program controlling early Xenopus mesendoderm formation: Network conservation and motifs., Charney RM., Semin Cell Dev Biol. June 1, 2017; 66 12-24.
	Spemann organizer transcriptome induction by early beta-catenin, Wnt, Nodal, and Siamois signals in Xenopus laevis., Ding Y., Proc Natl Acad Sci U S A. April 11, 2017; 114 (15): E3081-E3090.
	Pax8 and Pax2 are specifically required at different steps of Xenopus pronephros development., Buisson I., Dev Biol. January 15, 2015; 397 (2): 175-90.
	Carboxy terminus of GATA4 transcription factor is required for its cardiogenic activity and interaction with CDK4., Gallagher JM., Mech Dev. November 1, 2014; 134 31-41.
	Sirtuin inhibitor Ex-527 causes neural tube defects, ventral edema formations, and gastrointestinal malformations in Xenopus laevis embryos., Ohata Y., Dev Growth Differ. August 1, 2014; 56 (6): 460-8.
	Hhex and Cer1 mediate the Sox17 pathway for cardiac mesoderm formation in embryonic stem cells., Liu Y., Stem Cells. June 1, 2014; 32 (6): 1515-26.
	Inference of the Xenopus tropicalis embryonic regulatory network and spatial gene expression patterns., Zheng Z., BMC Syst Biol. January 8, 2014; 8 3.
	Coco regulates dorsoventral specification of germ layers via inhibition of TGFβ signalling., Bates TJ., Development. October 1, 2013; 140 (20): 4177-81.
	TBX3 Directs Cell-Fate Decision toward Mesendoderm., Weidgang CE., Stem Cell Reports. August 29, 2013; 1 (3): 248-65.
	Lin28 proteins are required for germ layer specification in Xenopus., Faas L., Development. March 1, 2013; 140 (5): 976-86.
	Suv4-20h histone methyltransferases promote neuroectodermal differentiation by silencing the pluripotency-associated Oct-25 gene., Nicetto D., PLoS Genet. January 1, 2013; 9 (1): e1003188.
	Klf4 is required for germ-layer differentiation and body axis patterning during Xenopus embryogenesis., Cao Q., Development. November 1, 2012; 139 (21): 3950-61.
	The Mix family of homeobox genes--key regulators of mesendoderm formation during vertebrate development., Pereira LA., Dev Biol. July 15, 2012; 367 (2): 163-77.
	fus/TLS orchestrates splicing of developmental regulators during gastrulation., Dichmann DS., Genes Dev. June 15, 2012; 26 (12): 1351-63.
	Dynamic in vivo binding of transcription factors to cis-regulatory modules of cer and gsc in the stepwise formation of the Spemann-Mangold organizer., Sudou N., Development. May 1, 2012; 139 (9): 1651-61.
	Cell movements of the deep layer of non-neural ectoderm underlie complete neural tube closure in Xenopus., Morita H., Development. April 1, 2012; 139 (8): 1417-26.
	KDEL tagging: a method for generating dominant-negative inhibitors of the secretion of TGF-beta superfamily proteins., Matsukawa S., Int J Dev Biol. January 1, 2012; 56 (5): 351-6.
	Expression analysis of the polypyrimidine tract binding protein (PTBP1) and its paralogs PTBP2 and PTBP3 during Xenopus tropicalis embryogenesis., Noiret M., Int J Dev Biol. January 1, 2012; 56 (9): 747-53.
	HEB and E2A function as SMAD/FOXH1 cofactors., Yoon SJ., Genes Dev. August 1, 2011; 25 (15): 1654-61.
	Geminin cooperates with Polycomb to restrain multi-lineage commitment in the early embryo., Lim JW., Development. January 1, 2011; 138 (1): 33-44.
	A conserved mechanism for vertebrate mesoderm specification in urodele amphibians and mammals., Swiers G., Dev Biol. July 1, 2010; 343 (1-2): 138-52.
	Identification of a novel negative regulator of activin/nodal signaling in mesendodermal formation of Xenopus embryos., Cheong SM., J Biol Chem. June 19, 2009; 284 (25): 17052-60.
	CDK9/cyclin complexes modulate endoderm induction by direct interaction with Mix.3/mixer., Zhu H., Dev Dyn. June 1, 2009; 238 (6): 1346-57.
	Sox17 facilitates the differentiation of mouse embryonic stem cells into primitive and definitive endoderm in vitro., Qu XB., Dev Growth Differ. September 1, 2008; 50 (7): 585-93.
	Bmp signaling is necessary and sufficient for ventrolateral endoderm specification in Xenopus., Wills A., Dev Dyn. August 1, 2008; 237 (8): 2177-86.
	Cephalic hedgehog expression is regulated directly by Sox17 in endoderm development of Xenopus laevis., Yagi Y., Cytotechnology. June 1, 2008; 57 (2): 151-9.
	The role of FGF signaling in the establishment and maintenance of mesodermal gene expression in Xenopus., Fletcher RB., Dev Dyn. May 1, 2008; 237 (5): 1243-54.
	Regulation of the Xenopus Xsox17alpha(1) promoter by co-operating VegT and Sox17 sites., Howard L., Dev Biol. October 15, 2007; 310 (2): 402-15.
	Negative regulation of Activin/Nodal signaling by SRF during Xenopus gastrulation., Yun CH., Development. February 1, 2007; 134 (4): 769-77.
	Global analysis of the transcriptional network controlling Xenopus endoderm formation., Sinner D., Development. May 1, 2006; 133 (10): 1955-66.
	Genomic profiling of mixer and Sox17beta targets during Xenopus endoderm development., Dickinson K., Dev Dyn. February 1, 2006; 235 (2): 368-81.
	SOX7 and SOX18 are essential for cardiogenesis in Xenopus., Zhang C., Dev Dyn. December 1, 2005; 234 (4): 878-91.

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