Papers associated with primary germ layer (and bmp4)

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	Cdx1 and Gsc distinctly regulate the transcription of BMP4 target gene ventx3.2 by directly binding to the proximal promoter region in Xenopus gastrulae., Goutam RS., Mol Cells. March 22, 2024; 100058.
	R-Spondin 2 governs Xenopus left-right body axis formation by establishing an FGF signaling gradient., Lee H, Lee H., Nat Commun. February 2, 2024; 15 (1): 1003.
	ZSWIM4 regulates embryonic patterning and BMP signaling by promoting nuclear Smad1 degradation., Wang C., EMBO Rep. February 1, 2024; 25 (2): 646-671.
	The early dorsal signal in vertebrate embryos requires endolysosomal membrane trafficking., Azbazdar Y., Bioessays. January 1, 2024; 46 (1): e2300179.
	OTUD3: A Lys6 and Lys63 specific deubiquitinase in early vertebrate development., Job F., Biochim Biophys Acta Gene Regul Mech. March 1, 2023; 1866 (1): 194901.
	Alcohol induces neural tube defects by reducing retinoic acid signaling and promoting neural plate expansion., Edri T., Front Cell Dev Biol. January 1, 2023; 11 1282273.
	Membrane potential drives the exit from pluripotency and cell fate commitment via calcium and mTOR., Sempou E., Nat Commun. November 5, 2022; 13 (1): 6681.
	Quantitative analysis of transcriptome dynamics provides novel insights into developmental state transitions., Johnson K., BMC Genomics. October 23, 2022; 23 (1): 723.
	The homeodomain transcription factor Ventx2 regulates respiratory progenitor cell number and differentiation timing during Xenopus lung development., Rankin SA, Rankin SA., Dev Growth Differ. September 1, 2022; 64 (7): 347-361.
	HMCES modulates the transcriptional regulation of nodal/activin and BMP signaling in mESCs., Liang T., Cell Rep. July 12, 2022; 40 (2): 111038.
	ccr7 affects both morphogenesis and differentiation during early Xenopus embryogenesis., Goto T., Dev Growth Differ. June 1, 2022; 64 (5): 254-260.
	Transmembrane H+ fluxes and the regulation of neural induction in Xenopus laevis., Leung HC., Zygote. April 1, 2022; 30 (2): 267-278.
	Uncovering the mesendoderm gene regulatory network through multi-omic data integration., Jansen C., Cell Rep. February 15, 2022; 38 (7): 110364.
	Targeted search for scaling genes reveals matrixmetalloproteinase 3 as a scaler of the dorsal-ventral pattern in Xenopus laevis embryos., Orlov EE., Dev Cell. January 10, 2022; 57 (1): 95-111.e12.
	Reduced Retinoic Acid Signaling During Gastrulation Induces Developmental Microcephaly., Gur M., Front Cell Dev Biol. January 1, 2022; 10 844619.
	Goosecoid Controls Neuroectoderm Specification via Dual Circuits of Direct Repression and Indirect Stimulation in Xenopus Embryos., Umair Z., Mol Cells. October 31, 2021; 44 (10): 723-735.
	Foxd4l1.1 Negatively Regulates Chordin Transcription in Neuroectoderm of Xenopus Gastrula., Kumar V., Cells. October 17, 2021; 10 (10):
	Huntingtin CAG expansion impairs germ layer patterning in synthetic human 2D gastruloids through polarity defects., Galgoczi S., Development. October 1, 2021; 148 (19):
	Molecular mechanisms of hearing loss in Nager syndrome., Maharana SK., Dev Biol. August 1, 2021; 476 200-208.
	BMP signaling is enhanced intracellularly by FHL3 controlling WNT-dependent spatiotemporal emergence of the neural crest., Alkobtawi M., Cell Rep. June 22, 2021; 35 (12): 109289.
	Secreted inhibitors drive the loss of regeneration competence in Xenopus limbs., Aztekin C., Development. June 1, 2021; 148 (11):
	Pinhead antagonizes Admp to promote notochord formation., Itoh K., iScience. May 7, 2021; 24 (6): 102520.
	Modeling endoderm development and disease in Xenopus., Edwards NA., Curr Top Dev Biol. January 1, 2021; 145 61-90.
	Evolution of Somite Compartmentalization: A View From Xenopus., Della Gaspera B., Front Cell Dev Biol. January 1, 2021; 9 790847.
	Dusp1 modulates activin/smad2 mediated germ layer specification via FGF signal inhibition in Xenopus embryos., Umair Z., Anim Cells Syst (Seoul). November 27, 2020; 24 (6): 359-370.
	Foxd4l1.1 negatively regulates transcription of neural repressor ventx1.1 during neuroectoderm formation in Xenopus embryos., Kumar S, Kumar S., Sci Rep. October 8, 2020; 10 (1): 16780.
	TMEM79/MATTRIN defines a pathway for Frizzled regulation and is required for Xenopus embryogenesis., Chen M., Elife. September 14, 2020; 9
	Natural size variation among embryos leads to the corresponding scaling in gene expression., Leibovich A., Dev Biol. June 15, 2020; 462 (2): 165-179.
	Trpc1 as the Missing Link Between the Bmp and Ca2+ Signalling Pathways During Neural Specification in Amphibians., Néant I., Sci Rep. November 5, 2019; 9 (1): 16049.
	The Wnt inhibitor Dkk1 is required for maintaining the normal cardiac differentiation program in Xenopus laevis., Guo Y., Dev Biol. May 1, 2019; 449 (1): 1-13.
	The neural border: Induction, specification and maturation of the territory that generates neural crest cells., Pla P., Dev Biol. December 1, 2018; 444 Suppl 1 S36-S46.
	Fam46a regulates BMP-dependent pre-placodal ectoderm differentiation in Xenopus., Watanabe T., Development. October 26, 2018; 145 (20):
	Bighead is a Wnt antagonist secreted by the Xenopus Spemann organizer that promotes Lrp6 endocytosis., Ding Y., Proc Natl Acad Sci U S A. September 25, 2018; 115 (39): E9135-E9144.
	Tbx2 is required for the suppression of mesendoderm during early Xenopus development., Teegala S., Dev Dyn. July 1, 2018; 247 (7): 903-913.
	Retinoic acid-induced expression of Hnf1b and Fzd4 is required for pancreas development in Xenopus laevis., Gere-Becker MB., Development. June 8, 2018; 145 (12):
	Timing is everything: Reiterative Wnt, BMP and RA signaling regulate developmental competence during endoderm organogenesis., Rankin SA, Rankin SA., Dev Biol. February 1, 2018; 434 (1): 121-132.
	A molecular atlas of the developing ectoderm defines neural, neural crest, placode, and nonneural progenitor identity in vertebrates., Plouhinec JL., PLoS Biol. October 19, 2017; 15 (10): e2004045.
	Nodal/Activin Pathway is a Conserved Neural Induction Signal in Chordates., Le Petillon Y., Nat Ecol Evol. August 1, 2017; 1 (8): 1192-1200.
	Lineage commitment of embryonic cells involves MEK1-dependent clearance of pluripotency regulator Ventx2., Scerbo P., Elife. June 27, 2017; 6
	Dissecting BMP signaling input into the gene regulatory networks driving specification of the blood stem cell lineage., Kirmizitas A., Proc Natl Acad Sci U S A. June 6, 2017; 114 (23): 5814-5821.
	A gene regulatory program controlling early Xenopus mesendoderm formation: Network conservation and motifs., Charney RM., Semin Cell Dev Biol. June 1, 2017; 66 12-24.
	Brg1 chromatin remodeling ATPase balances germ layer patterning by amplifying the transcriptional burst at midblastula transition., Wagner G., PLoS Genet. May 12, 2017; 13 (5): e1006757.
	Coordinating heart morphogenesis: A novel role for hyperpolarization-activated cyclic nucleotide-gated (HCN) channels during cardiogenesis in Xenopus laevis., Pitcairn E., Commun Integr Biol. May 10, 2017; 10 (3): e1309488.
	Genomic integration of Wnt/β-catenin and BMP/Smad1 signaling coordinates foregut and hindgut transcriptional programs., Stevens ML., Development. April 1, 2017; 144 (7): 1283-1295.
	Ubiquitin C-terminal hydrolase37 regulates Tcf7 DNA binding for the activation of Wnt signalling., Han W., Sci Rep. February 15, 2017; 7 42590.
	What we can learn from a tadpole about ciliopathies and airway diseases: Using systems biology in Xenopus to study cilia and mucociliary epithelia., Walentek P., Genesis. January 1, 2017; 55 (1-2):
	FoxD1 protein interacts with Wnt and BMP signaling to differentially pattern mesoderm and neural tissue., Polevoy H., Int J Dev Biol. January 1, 2017; 61 (3-4-5): 293-302.
	Expression of the ALK1 family of type I BMP/ADMP receptors during gastrula stages in Xenopus embryos., Leibovich A., Int J Dev Biol. January 1, 2017; 61 (6-7): 465-470.
	Ascl1 represses the mesendoderm induction in Xenopus., Min Z., Acta Biochim Biophys Sin (Shanghai). November 1, 2016; 48 (11): 1006-1015.
	Data on microRNAs and microRNA-targeted mRNAs in Xenopus ectoderm., Shah VV., Data Brief. October 14, 2016; 9 699-703.

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