Papers associated with primary germ layer (and eomes)

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	Retinoic acid control of pax8 during renal specification of Xenopus pronephros involves hox and meis3., Durant-Vesga J., Dev Biol. January 1, 2023; 493 17-28.
	Membrane potential drives the exit from pluripotency and cell fate commitment via calcium and mTOR., Sempou E., Nat Commun. November 5, 2022; 13 (1): 6681.
	Quantitative analysis of transcriptome dynamics provides novel insights into developmental state transitions., Johnson K., BMC Genomics. October 23, 2022; 23 (1): 723.
	Uncovering the mesendoderm gene regulatory network through multi-omic data integration., Jansen C., Cell Rep. February 15, 2022; 38 (7): 110364.
	Huntingtin CAG expansion impairs germ layer patterning in synthetic human 2D gastruloids through polarity defects., Galgoczi S., Development. October 1, 2021; 148 (19):
	Tril dampens Nodal signaling through Pellino2- and Traf6-mediated activation of Nedd4l., Kim HS., Proc Natl Acad Sci U S A. September 7, 2021; 118 (36):
	Temporal transcriptomic profiling reveals dynamic changes in gene expression of Xenopus animal cap upon activin treatment., Satou-Kobayashi Y., Sci Rep. July 15, 2021; 11 (1): 14537.
	Combinatorial transcription factor activities on open chromatin induce embryonic heterogeneity in vertebrates., Bright AR., EMBO J. May 3, 2021; 40 (9): e104913.
	Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endoderm gene regulatory network., Mukherjee S., Elife. September 7, 2020; 9
	Tbx2 mediates dorsal patterning and germ layer suppression through inhibition of BMP/GDF and Activin/Nodal signaling., Reich S., BMC Mol Cell Biol. May 28, 2020; 21 (1): 39.
	FAM46B is a prokaryotic-like cytoplasmic poly(A) polymerase essential in human embryonic stem cells., Hu JL., Nucleic Acids Res. March 18, 2020; 48 (5): 2733-2748.
	Skeletal muscle differentiation drives a dramatic downregulation of RNA polymerase III activity and differential expression of Polr3g isoforms., McQueen C., Dev Biol. October 1, 2019; 454 (1): 74-84.
	Maternal pluripotency factors initiate extensive chromatin remodelling to predefine first response to inductive signals., Gentsch GE., Nat Commun. September 19, 2019; 10 (1): 4269.
	Nucleotide receptor P2RY4 is required for head formation via induction and maintenance of head organizer in Xenopus laevis., Harata A., Dev Growth Differ. February 1, 2019; 61 (2): 186-197.
	The Xenopus animal cap transcriptome: building a mucociliary epithelium., Angerilli A., Nucleic Acids Res. September 28, 2018; 46 (17): 8772-8787.
	Tbx2 is required for the suppression of mesendoderm during early Xenopus development., Teegala S., Dev Dyn. July 1, 2018; 247 (7): 903-913.
	A molecular atlas of the developing ectoderm defines neural, neural crest, placode, and nonneural progenitor identity in vertebrates., Plouhinec JL., PLoS Biol. October 19, 2017; 15 (10): e2004045.
	Id genes are essential for early heart formation., Cunningham TJ., Genes Dev. July 1, 2017; 31 (13): 1325-1338.
	A catalog of Xenopus tropicalis transcription factors and their regional expression in the early gastrula stage embryo., Blitz IL., Dev Biol. June 15, 2017; 426 (2): 409-417.
	A gene regulatory program controlling early Xenopus mesendoderm formation: Network conservation and motifs., Charney RM., Semin Cell Dev Biol. June 1, 2017; 66 12-24.
	Activation of a T-box-Otx2-Gsc gene network independent of TBP and TBP-related factors., Gazdag E., Development. April 15, 2016; 143 (8): 1340-50.
	A novel role for Ascl1 in the regulation of mesendoderm formation via HDAC-dependent antagonism of VegT., Gao L., Development. February 1, 2016; 143 (3): 492-503.
	E2a is necessary for Smad2/3-dependent transcription and the direct repression of lefty during gastrulation., Wills AE., Dev Cell. February 9, 2015; 32 (3): 345-57.
	Global identification of Smad2 and Eomesodermin targets in zebrafish identifies a conserved transcriptional network in mesendoderm and a novel role for Eomesodermin in repression of ectodermal gene expression., Nelson AC., BMC Biol. October 3, 2014; 12 81.
	In vivo T-box transcription factor profiling reveals joint regulation of embryonic neuromesodermal bipotency., Gentsch GE., Cell Rep. September 26, 2013; 4 (6): 1185-96.
	TBX3 Directs Cell-Fate Decision toward Mesendoderm., Weidgang CE., Stem Cell Reports. August 29, 2013; 1 (3): 248-65.
	Optimal histone H3 to linker histone H1 chromatin ratio is vital for mesodermal competence in Xenopus., Lim CY., Development. February 1, 2013; 140 (4): 853-60.
	Conservation and evolutionary divergence in the activity of receptor-regulated smads., Sorrentino GM., Evodevo. October 1, 2012; 3 (1): 22.
	The Mix family of homeobox genes--key regulators of mesendoderm formation during vertebrate development., Pereira LA., Dev Biol. July 15, 2012; 367 (2): 163-77.
	A developmental requirement for HIRA-dependent H3.3 deposition revealed at gastrulation in Xenopus., Szenker E., Cell Rep. June 28, 2012; 1 (6): 730-40.
	fus/TLS orchestrates splicing of developmental regulators during gastrulation., Dichmann DS., Genes Dev. June 15, 2012; 26 (12): 1351-63.
	Snail2 controls mesodermal BMP/Wnt induction of neural crest., Shi J., Development. August 1, 2011; 138 (15): 3135-45.
	Negative autoregulation of Oct3/4 through Cdx1 promotes the onset of gastrulation., Rousso SZ., Dev Dyn. April 1, 2011; 240 (4): 796-807.
	Yes-associated protein 65 (YAP) expands neural progenitors and regulates Pax3 expression in the neural plate border zone., Gee ST., PLoS One. January 1, 2011; 6 (6): e20309.
	Zygotic VegT is required for Xenopus paraxial mesoderm formation and is regulated by Nodal signaling and Eomesodermin., Fukuda M., Int J Dev Biol. January 1, 2010; 54 (1): 81-92.
	Early activation of FGF and nodal pathways mediates cardiac specification independently of Wnt/beta-catenin signaling., Samuel LJ., PLoS One. October 28, 2009; 4 (10): e7650.
	A microarray screen for direct targets of Zic1 identifies an aquaporin gene, aqp-3b, expressed in the neural folds., Cornish EJ., Dev Dyn. May 1, 2009; 238 (5): 1179-94.
	Eomesodermin requires transforming growth factor-beta/activin signaling and binds Smad2 to activate mesodermal genes., Picozzi P., J Biol Chem. January 23, 2009; 284 (4): 2397-408.
	The role of FGF signaling in the establishment and maintenance of mesodermal gene expression in Xenopus., Fletcher RB., Dev Dyn. May 1, 2008; 237 (5): 1243-54.
	PP2A:B56epsilon is required for eye induction and eye field separation., Rorick AM., Dev Biol. February 15, 2007; 302 (2): 477-93.
	Emilin1 links TGF-beta maturation to blood pressure homeostasis., Zacchigna L., Cell. March 10, 2006; 124 (5): 929-42.
	Genomic profiling of mixer and Sox17beta targets during Xenopus endoderm development., Dickinson K., Dev Dyn. February 1, 2006; 235 (2): 368-81.
	Twisted gastrulation is required for forebrain specification and cooperates with Chordin to inhibit BMP signaling during X. tropicalis gastrulation., Wills A., Dev Biol. January 1, 2006; 289 (1): 166-78.
	SOX7 and SOX18 are essential for cardiogenesis in Xenopus., Zhang C., Dev Dyn. December 1, 2005; 234 (4): 878-91.
	Maternal Xenopus Zic2 negatively regulates Nodal-related gene expression during anteroposterior patterning., Houston DW., Development. November 1, 2005; 132 (21): 4845-55.
	Eomesodermin is expressed in mouse oocytes and pre-implantation embryos., McConnell J., Mol Reprod Dev. August 1, 2005; 71 (4): 399-404.
	Germ-layer specification and control of cell growth by Ectodermin, a Smad4 ubiquitin ligase., Dupont S., Cell. April 8, 2005; 121 (1): 87-99.
	The ARID domain protein dril1 is necessary for TGF(beta) signaling in Xenopus embryos., Callery EM., Dev Biol. February 15, 2005; 278 (2): 542-59.
	Modulation of eomes activity alters the size of the developing heart: implications for in utero cardiac gene therapy., Ryan K., Hum Gene Ther. September 1, 2004; 15 (9): 842-55.
	Endogenous Cerberus activity is required for anterior head specification in Xenopus., Silva AC., Development. October 1, 2003; 130 (20): 4943-53.

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