Papers associated with primary germ layer (and foxd4l1.1)

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	Alcohol induces neural tube defects by reducing retinoic acid signaling and promoting neural plate expansion., Edri T., Front Cell Dev Biol. January 1, 2023; 11 1282273.
	Goosecoid Controls Neuroectoderm Specification via Dual Circuits of Direct Repression and Indirect Stimulation in Xenopus Embryos., Umair Z., Mol Cells. October 31, 2021; 44 (10): 723-735.
	Foxd4l1.1 Negatively Regulates Chordin Transcription in Neuroectoderm of Xenopus Gastrula., Kumar V., Cells. October 17, 2021; 10 (10):
	A systemic cell cycle block impacts stage-specific histone modification profiles during Xenopus embryogenesis., Pokrovsky D., PLoS Biol. September 1, 2021; 19 (9): e3001377.
	Smad2 and Smad3 differentially modulate chordin transcription via direct binding on the distal elements in gastrula Xenopus embryos., Kumar V., Biochem Biophys Res Commun. June 25, 2021; 559 168-175.
	Combinatorial transcription factor activities on open chromatin induce embryonic heterogeneity in vertebrates., Bright AR., EMBO J. May 3, 2021; 40 (9): e104913.
	Dusp1 modulates activin/smad2 mediated germ layer specification via FGF signal inhibition in Xenopus embryos., Umair Z., Anim Cells Syst (Seoul). November 27, 2020; 24 (6): 359-370.
	Foxd4l1.1 negatively regulates transcription of neural repressor ventx1.1 during neuroectoderm formation in Xenopus embryos., Kumar S, Kumar S., Sci Rep. October 8, 2020; 10 (1): 16780.
	Natural size variation among embryos leads to the corresponding scaling in gene expression., Leibovich A., Dev Biol. June 15, 2020; 462 (2): 165-179.
	miR-199 plays both positive and negative regulatory roles in Xenopus eye development., Ritter RA., Genesis. March 1, 2020; 58 (3-4): e23354.
	Pinhead signaling regulates mesoderm heterogeneity via FGF receptor-dependent pathway., Ossipova O., Development. January 1, 2020;
	Skeletal muscle differentiation drives a dramatic downregulation of RNA polymerase III activity and differential expression of Polr3g isoforms., McQueen C., Dev Biol. October 1, 2019; 454 (1): 74-84.
	Ventx1.1 as a Direct Repressor of Early Neural Gene zic3 in Xenopus laevis., Umair Z., Mol Cells. December 31, 2018; 41 (12): 1061-1071.
	Wbp2nl has a developmental role in establishing neural and non-neural ectodermal fates., Marchak A., Dev Biol. September 1, 2017; 429 (1): 213-224.
	Nodal/Activin Pathway is a Conserved Neural Induction Signal in Chordates., Le Petillon Y., Nat Ecol Evol. August 1, 2017; 1 (8): 1192-1200.
	Lineage commitment of embryonic cells involves MEK1-dependent clearance of pluripotency regulator Ventx2., Scerbo P., Elife. June 27, 2017; 6
	Foxd4 is essential for establishing neural cell fate and for neuronal differentiation., Sherman JH., Genesis. June 1, 2017; 55 (6):
	Brg1 chromatin remodeling ATPase balances germ layer patterning by amplifying the transcriptional burst at midblastula transition., Wagner G., PLoS Genet. May 12, 2017; 13 (5): e1006757.
	Pa2G4 is a novel Six1 co-factor that is required for neural crest and otic development., Neilson KM., Dev Biol. January 15, 2017; 421 (2): 171-182.
	Neural transcription factors bias cleavage stage blastomeres to give rise to neural ectoderm., Gaur S., Genesis. June 1, 2016; 54 (6): 334-49.
	Early neural ectodermal genes are activated by Siamois and Twin during blastula stages., Klein SL., Genesis. May 1, 2015; 53 (5): 308-20.
	Occupancy of tissue-specific cis-regulatory modules by Otx2 and TLE/Groucho for embryonic head specification., Yasuoka Y., Nat Commun. July 9, 2014; 5 4322.
	PV.1 suppresses the expression of FoxD5b during neural induction in Xenopus embryos., Yoon J., Mol Cells. March 1, 2014; 37 (3): 220-5.
	On becoming neural: what the embryo can tell us about differentiating neural stem cells., Moody SA., Am J Stem Cells. June 30, 2013; 2 (2): 74-94.
	WNK4 is an essential effector of anterior formation in FGF signaling., Shimizu M., Genes Cells. June 1, 2013; 18 (6): 442-9.
	Conserved structural domains in FoxD4L1, a neural forkhead box transcription factor, are required to repress or activate target genes., Klein SL., PLoS One. April 4, 2013; 8 (4): e61845.
	Suv4-20h histone methyltransferases promote neuroectodermal differentiation by silencing the pluripotency-associated Oct-25 gene., Nicetto D., PLoS Genet. January 1, 2013; 9 (1): e1003188.
	AP-1(c-Jun/FosB) mediates xFoxD5b expression in Xenopus early developmental neurogenesis., Yoon J., Int J Dev Biol. January 1, 2013; 57 (11-12): 865-72.
	Specific domains of FoxD4/5 activate and repress neural transcription factor genes to control the progression of immature neural ectoderm to differentiating neural plate., Neilson KM., Dev Biol. May 15, 2012; 365 (2): 363-75.
	A revised model of Xenopus dorsal midline development: differential and separable requirements for Notch and Shh signaling., Peyrot SM., Dev Biol. April 15, 2011; 352 (2): 254-66.
	The response of early neural genes to FGF signaling or inhibition of BMP indicate the absence of a conserved neural induction module., Rogers CD., BMC Dev Biol. January 26, 2011; 11 74.
	Microarray identification of novel downstream targets of FoxD4L1/D5, a critical component of the neural ectodermal transcriptional network., Yan B., Dev Dyn. December 1, 2010; 239 (12): 3467-80.
	BMP inhibition initiates neural induction via FGF signaling and Zic genes., Marchal L., Proc Natl Acad Sci U S A. October 13, 2009; 106 (41): 17437-42.
	Notch signaling downstream of foxD5 promotes neural ectodermal transcription factors that inhibit neural differentiation., Yan B., Dev Dyn. June 1, 2009; 238 (6): 1358-65.
	foxD5 plays a critical upstream role in regulating neural ectodermal fate and the onset of neural differentiation., Yan B., Dev Biol. May 1, 2009; 329 (1): 80-95.
	Characterisation of the fibroblast growth factor dependent transcriptome in early development., Branney PA., PLoS One. January 1, 2009; 4 (3): e4951.
	The competence of Xenopus blastomeres to produce neural and retinal progeny is repressed by two endo-mesoderm promoting pathways., Yan B., Dev Biol. May 1, 2007; 305 (1): 103-19.
	Identification of novel genes affecting mesoderm formation and morphogenesis through an enhanced large scale functional screen in Xenopus., Chen JA., Mech Dev. March 1, 2005; 122 (3): 307-31.
	Of Fox and Frogs: Fox (fork head/winged helix) transcription factors in Xenopus development., Pohl BS., Gene. January 3, 2005; 344 21-32.
	foxD5a, a Xenopus winged helix gene, maintains an immature neural ectoderm via transcriptional repression that is dependent on the C-terminal domain., Sullivan SA., Dev Biol. April 15, 2001; 232 (2): 439-57.
	Neuroectodermal specification and regionalization of the Spemann organizer in Xenopus., Fetka I., Mech Dev. May 1, 2000; 93 (1-2): 49-58.

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