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Summary Stage Literature (1866) Attributions Wiki
XB-STAGE-6

Papers associated with cleavage stage

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Nascent transcriptome reveals orchestration of zygotic genome activation in early embryogenesis., Chen H, Good MC., Curr Biol. October 10, 2022; 32 (19): 4314-4324.e7.                        

PEX5 translocation into and out of peroxisomes drives matrix protein import., Skowyra ML, Rapoport TA., Mol Cell. September 1, 2022; 82 (17): 3209-3225.e7.                              

Maternal Wnt11b regulates cortical rotation during Xenopus axis formation: analysis of maternal-effect wnt11b mutants., Houston DW, Elliott KL, Coppenrath K, Wlizla M, Horb ME., Development. September 1, 2022; 149 (17):                                   

The germ plasm is anchored at the cleavage furrows through interaction with tight junctions in the early zebrafish embryo., Rostam N, Goloborodko A, Riemer S, Hertel A, Riedel D, Vorbrüggen G, Dosch R., Development. August 1, 2022; 149 (15):   

A non-transcriptional function of Yap regulates the DNA replication program in Xenopus laevis., Meléndez García R, Haccard O, Chesneau A, Narassimprakash H, Roger J, Perron M, Marheineke K, Bronchain O., Elife. July 15, 2022; 11                             

Normal Table of Xenopus development: a new graphical resource., Zahn N, James-Zorn C, Ponferrada VG, Adams DS, Grzymkowski J, Buchholz DR, Nascone-Yoder NM, Horb M, Moody SA, Vize PD, Zorn AM., Development. July 15, 2022; 149 (14):                         

Cell cycle and developmental control of cortical excitability in Xenopus laevis., Swider ZT, Michaud A, Leda M, Landino J, Goryachev AB, Bement WM., Mol Biol Cell. July 1, 2022; 33 (8): ar73.            

Whole-genome sequencing identifies I-SceI-mediated transgene integration sites in Xenopus tropicalis snai2:eGFP line., Wang J, Lu C, Wei S., G3 (Bethesda). May 6, 2022; 12 (5):               

Structural Mechanics of the Alpha-2-Macroglobulin Transformation., Arimura Y, Funabiki H., J Mol Biol. March 15, 2022; 434 (5): 167413.

Extended cleavage specificity of a Chinese alligator granzyme B homologue, a strict Glu-ase in contrast to the mammalian Asp-ases., Ryu J, Fu Z, Akula S, Olsson AK, Hellman L., Dev Comp Immunol. March 1, 2022; 128 104324.            

Proteolytic activation of the epithelial sodium channel (ENaC) by factor VII activating protease (FSAP) and its relevance for sodium retention in nephrotic mice., Artunc F, Bohnert BN, Schneider JC, Staudner T, Sure F, Ilyaskin AV, Wörn M, Essigke D, Janessa A, Nielsen NV, Birkenfeld AL, Etscheid M, Haerteis S, Korbmacher C, Kanse SM., Pflugers Arch. February 1, 2022; 474 (2): 217-229.

Yolk platelets impede nuclear expansion in Xenopus embryos., Shimogama S, Iwao Y, Hara Y., Dev Biol. February 1, 2022; 482 101-113.                    

Systematic mapping of rRNA 2'-O methylation during frog development and involvement of the methyltransferase Fibrillarin in eye and craniofacial development in Xenopus laevis., Delhermite J, Tafforeau L, Sharma S, Marchand V, Wacheul L, Lattuca R, Desiderio S, Motorin Y, Bellefroid E, Lafontaine DLJ., PLoS Genet. January 18, 2022; 18 (1): e1010012.                                                              

Targeted search for scaling genes reveals matrixmetalloproteinase 3 as a scaler of the dorsal-ventral pattern in Xenopus laevis embryos., Orlov EE, Nesterenko AM, Korotkova DD, Parshina EA, Martynova NY, Zaraisky AG., Dev Cell. January 10, 2022; 57 (1): 95-111.e12.                                

Activation by cleavage of the epithelial Na+ channel α and γ subunits independently coevolved with the vertebrate terrestrial migration., Wang XP, Balchak DM, Gentilcore C, Clark NL, Kashlan OB., Elife. January 5, 2022; 11         

Optogenetic relaxation of actomyosin contractility uncovers mechanistic roles of cortical tension during cytokinesis., Yamamoto K, Miura H, Ishida M, Mii Y, Kinoshita N, Takada S, Ueno N, Sawai S, Kondo Y, Aoki K., Nat Commun. December 8, 2021; 12 (1): 7145.

CRISPR-SID: Identifying EZH2 as a druggable target for desmoid tumors via in vivo dependency mapping., Naert T, Tulkens D, Van Nieuwenhuysen T, Przybyl J, Demuynck S, van de Rijn M, Al-Jazrawe M, Alman BA, Coucke PJ, De Leeneer K, Vanhove C, Savvides SN, Creytens D, Vleminckx K, Vleminckx K., Proc Natl Acad Sci U S A. November 23, 2021; 118 (47):                             

Apurinic/Apyrimidinic Endonuclease 2 (APE2): An ancillary enzyme for contextual base excision repair mechanisms to preserve genome stability., Chaudhari S, Ware AP, Jayaram P, Gorthi SP, El-Khamisy SF, Satyamoorthy K., Biochimie. November 1, 2021; 190 70-90.

The DNA-to-cytoplasm ratio broadly activates zygotic gene expression in Xenopus., Jukam D, Kapoor RR, Straight AF, Skotheim JM., Curr Biol. October 11, 2021; 31 (19): 4269-4281.e8.                          

Xenopus chip for single-egg trapping, in vitro fertilization, development, and tadpole escape., Nam SW, Chae JP, Kwon YH, Son MY, Bae JS, Park MJ., Biochem Biophys Res Commun. September 10, 2021; 569 29-34.

Auto-inhibitory intramolecular S5/S6 interaction in the TRPV6 channel regulates breast cancer cell migration and invasion., Cai R, Wang L, Liu X, Michalak M, Tang J, Peng JB, Chen XZ., Commun Biol. August 19, 2021; 4 (1): 990.              

Evaluating the Arrhenius equation for developmental processes., Crapse J, Pappireddi N, Gupta M, Shvartsman SY, Wieschaus E, Wühr M., Mol Syst Biol. August 1, 2021; 17 (8): e9895.                  

Conserved role of the urotensin II receptor 4 signalling pathway to control body straightness in a tetrapod., Alejevski F, Leemans M, Gaillard AL, Leistenschneider D, de Flori C, Bougerol M, Le Mével S, Herrel A, Fini JB, Pézeron G, Tostivint H., Open Biol. August 1, 2021; 11 (8): 210065.                                    

Analysis of Transforming Growth Factor ß Family Cleavage Products Secreted Into the Blastocoele of Xenopus laevis Embryos., Kim HS, Christian JL., J Vis Exp. July 21, 2021; (173):


Regulation of epithelial sodium channel activity by SARS-CoV-1 and SARS-CoV-2 proteins., Grant SN, Lester HA., Biophys J. July 20, 2021; 120 (14): 2805-2813.

Crosstalk between repair pathways elicits double-strand breaks in alkylated DNA and implications for the action of temozolomide., Fuchs RP, Isogawa A, Paulo JA, Onizuka K, Takahashi T, Amunugama R, Duxin JP, Fujii S., Elife. July 8, 2021; 10           

The molecular basis of coupling between poly(A)-tail length and translational efficiency., Xiang K, Bartel DP., Elife. July 2, 2021; 10                       

Metal ion fluxes controlling amphibian fertilization., Seeler JF, Sharma A, Zaluzec NJ, Bleher R, Lai B, Schultz EG, Hoffman BM, LaBonne C, Woodruff TK, O'Halloran TV., Nat Chem. July 1, 2021; 13 (7): 683-691.              

Cell cycle control during early embryogenesis., Brantley SE, Di Talia S., Development. July 1, 2021; 148 (13):


The Wnt-specific astacin proteinase HAS-7 restricts head organizer formation in Hydra., Ziegler B, Yiallouros I, Trageser B, Kumar S, Mercker M, Kling S, Fath M, Warnken U, Schnölzer M, Holstein TW, Hartl M, Marciniak-Czochra A, Stetefeld J, Stöcker W, Özbek S., BMC Biol. June 9, 2021; 19 (1): 120.              

In Vivo Subcellular Mass Spectrometry Enables Proteo-Metabolomic Single-Cell Systems Biology in a Chordate Embryo Developing to a Normally Behaving Tadpole (X. laevis)*., Lombard-Banek C, Li J, Portero EP, Onjiko RM, Singer CD, Plotnick DO, Al Shabeeb RQ, Nemes P., Angew Chem Int Ed Engl. June 1, 2021; 60 (23): 12852-12858.

Altering metabolite distribution at Xenopus cleavage stages affects left-right gene expression asymmetries., Onjiko RM, Nemes P, Moody SA., Genesis. June 1, 2021; 59 (5-6): e23418.          

Cleavage-Resistant Protein Labeling With Hydrophilic Trityl Enables Distance Measurements In-Cell., Hasanbasri Z, Singewald K, Gluth TD, Driesschaert B, Saxena S., J Phys Chem B. May 27, 2021; 125 (20): 5265-5274.

Kindlin2 regulates neural crest specification via integrin-independent regulation of the FGF signaling pathway., Wang H, Wang C, Wang C, Wang C, Long Q, Zhang Y, Wang M, Liu J, Qi X, Cai D, Lu G, Sun J, Yao YG, Chan WY, Chan WY, Deng Y, Zhao H., Development. May 15, 2021; 148 (10):                                           

Diversity and robustness of bone morphogenetic protein pattern formation., Madamanchi A, Mullins MC, Umulis DM., Development. April 6, 2021; 148 (7):           

The Enigma of Substrate Recognition and Catalytic Efficiency of APE1-Like Enzymes., Davletgildeeva AT, Ishchenko AA, Saparbaev M, Fedorova OS, Kuznetsov NA., Front Cell Dev Biol. March 26, 2021; 9 617161.

Primordial Germ Cell Specification in Vertebrate Embryos: Phylogenetic Distribution and Conserved Molecular Features of Preformation and Induction., Hansen CL, Pelegri F., Front Cell Dev Biol. March 26, 2021; 9 730332.              

Actin polymerization is not required for the fast block to polyspermy in the African clawed frog, Xenopus laevis., Tembo M, Sauer ML, Wisner BW, Beleny DO, Napolitano MA, Carlson AE., MicroPubl Biol. February 9, 2021; 2021   

The Ubiquitin Ligase TRAIP: Double-Edged Sword at the Replisome., Wu RA, Pellman DS, Walter JC., Trends Cell Biol. February 1, 2021; 31 (2): 75-85.      

ATP and large signaling metabolites flux through caspase-activated Pannexin 1 channels., Narahari AK, Kreutzberger AJ, Gaete PS, Chiu YH, Leonhardt SA, Medina CB, Jin X, Oleniacz PW, Kiessling V, Barrett PQ, Ravichandran KS, Yeager M, Contreras JE, Tamm LK, Bayliss DA., Elife. January 7, 2021; 10


Ectoderm to mesoderm transition by down-regulation of actomyosin contractility., Kashkooli L, Rozema D, Espejo-Ramirez L, Lasko P, Fagotto F., PLoS Biol. January 6, 2021; 19 (1): e3001060.                                            

FAM83F regulates canonical Wnt signalling through an interaction with CK1α., Dunbar K, Jones RA, Dingwell K, Macartney TJ, Smith JC, Sapkota GP., Life Sci Alliance. December 24, 2020; 4 (2):                                   

Mechanistic insights into volatile anesthetic modulation of K2P channels., Wague A, Joseph TT, Woll KA, Bu W, Vaidya KA, Bhanu NV, Garcia BA, Nimigean CM, Eckenhoff RG, Riegelhaupt PM., Elife. December 21, 2020; 9                   

Hes5.9 Coordinate FGF and Notch Signaling to Modulate Gastrulation via Regulating Cell Fate Specification and Cell Migration in Xenopus tropicalis., Huang X, Zhang L, Yang S, Zhang Y, Wu M, Chen P., Genes (Basel). November 18, 2020; 11 (11):                   

Paired Box 9 (PAX9), the RNA polymerase II transcription factor, regulates human ribosome biogenesis and craniofacial development., Farley-Barnes KI, Deniz E, Overton MM, Khokha MK, Baserga SJ., PLoS Genet. August 19, 2020; 16 (8): e1008967.                                    

CRISPR/Cas9 mediated mutation of the mtnr1a melatonin receptor gene causes rod photoreceptor degeneration in developing Xenopus tropicalis., Wiechmann AF, Martin TA, Horb ME., Sci Rep. August 13, 2020; 10 (1): 13757.                                  

Neuronal MT1-MMP mediates ECM clearance and Lrp4 cleavage for agrin deposition and signaling in presynaptic development., Oentaryo MJ, Tse AC, Lee CW, Lee CW., J Cell Sci. August 5, 2020; 133 (15):


Defective heart chamber growth and myofibrillogenesis after knockout of adprhl1 gene function by targeted disruption of the ancestral catalytic active site., Smith SJ, Towers N, Demetriou K, Mohun TJ., PLoS One. July 29, 2020; 15 (7): e0235433.                                            

GSK3 Inhibits Macropinocytosis and Lysosomal Activity through the Wnt Destruction Complex Machinery., Albrecht LV, Tejeda-Muñoz N, Bui MH, Cicchetto AC, Di Biagio D, Colozza G, Schmid E, Piccolo S, Christofk HR, De Robertis EM., Cell Rep. July 28, 2020; 32 (4): 107973.                                      

Zinc protection of fertilized eggs is an ancient feature of sexual reproduction in animals., Wozniak KL, Bainbridge RE, Summerville DW, Tembo M, Phelps WA, Sauer ML, Wisner BW, Czekalski ME, Pasumarthy S, Hanson ML, Linderman MB, Luu CH, Boehm ME, Sanders SM, Buckley KM, Bain DJ, Nicotra ML, Lee MT, Carlson AE., PLoS Biol. July 15, 2020; 18 (7): e3000811.          

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