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Summary Stage Literature (2200) Attributions Wiki
XB-STAGE-7

Papers associated with gastrula stage

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Developmentally regulated long non-coding RNAs in Xenopus tropicalis., Forouzmand E, Owens NDL, Blitz IL, Paraiso KD, Khokha MK, Gilchrist MJ, Xie X, Cho KWY., Dev Biol. June 15, 2017; 426 (2): 401-408.                  

A catalog of Xenopus tropicalis transcription factors and their regional expression in the early gastrula stage embryo., Blitz IL, Paraiso KD, Patrushev I, Chiu WTY, Cho KWY, Gilchrist MJ., Dev Biol. June 15, 2017; 426 (2): 409-417.        

Identification and comparative analyses of Siamois cluster genes in Xenopus laevis and tropicalis., Haramoto Y, Saijyo T, Tanaka T, Furuno N, Suzuki A, Ito Y, Kondo M, Taira M, Takahashi S., Dev Biol. June 15, 2017; 426 (2): 374-383.                  

Heterochromatic histone modifications at transposons in Xenopus tropicalis embryos., van Kruijsbergen I, Hontelez S, Elurbe DM, van Heeringen SJ, Huynen MA, Veenstra GJC., Dev Biol. June 15, 2017; 426 (2): 460-471.

High variability of expression profiles of homeologous genes for Wnt, Hh, Notch, and Hippo signaling pathways in Xenopus laevis., Michiue T, Yamamoto T, Yasuoka Y, Goto T, Ikeda T, Nagura K, Nakayama T, Taira M, Kinoshita T., Dev Biol. June 15, 2017; 426 (2): 270-290.                  

The phosphatase Pgam5 antagonizes Wnt/β-Catenin signaling in embryonic anterior-posterior axis patterning., Rauschenberger V, Bernkopf DB, Krenn S, Jalal K, Heller J, Behrens J, Gentzel M, Schambony A., Development. June 15, 2017; 144 (12): 2234-2247.                                      

Lineage commitment of embryonic cells involves MEK1-dependent clearance of pluripotency regulator Ventx2., Scerbo P, Marchal L, Kodjabachian L., Elife. June 27, 2017; 6                               

Id genes are essential for early heart formation., Cunningham TJ, Yu MS, McKeithan WL, Spiering S, Carrette F, Huang CT, Bushway PJ, Tierney M, Albini S, Giacca M, Mano M, Puri PL, Sacco A, Ruiz-Lozano P, Riou JF, Umbhauer M, Duester G, Mercola M, Colas AR., Genes Dev. July 1, 2017; 31 (13): 1325-1338.                

H3K4 Methylation-Dependent Memory of Somatic Cell Identity Inhibits Reprogramming and Development of Nuclear Transfer Embryos., Hörmanseder E, Simeone A, Allen GE, Bradshaw CR, Figlmüller M, Gurdon J, Jullien J., Cell Stem Cell. July 6, 2017; 21 (1): 135-143.e6.          

Sorting at embryonic boundaries requires high heterotypic interfacial tension., Canty L, Zarour E, Kashkooli L, François P, Fagotto F., Nat Commun. July 31, 2017; 8 (1): 157.                                      

An analysis of MyoD-dependent transcription using CRISPR/Cas9 gene targeting in Xenopus tropicalis embryos., McQueen C, Pownall ME., Mech Dev. August 1, 2017; 146 1-9.          

Nodal/Activin Pathway is a Conserved Neural Induction Signal in Chordates., Le Petillon Y, Luxardi G, Scerbo P, Cibois M, Leon A, Subirana L, Irimia M, Kodjabachian L, Escriva H, Bertrand S., Nat Ecol Evol. August 1, 2017; 1 (8): 1192-1200.                                

ZC4H2 stabilizes Smads to enhance BMP signalling, which is involved in neural development in Xenopus., Ma P, Ren B, Yang X, Sun B, Liu X, Kong Q, Li C, Mao B., Open Biol. August 1, 2017; 7 (8):                           

Ingression-type cell migration drives vegetal endoderm internalisation in the Xenopus gastrula., Wen JW, Winklbauer R., Elife. August 10, 2017; 6                           

Dual control of pcdh8l/PCNS expression and function in Xenopus laevis neural crest cells by adam13/33 via the transcription factors tfap2α and arid3a., Khedgikar V, Abbruzzese G, Mathavan K, Szydlo H, Cousin H, Alfandari D, Alfandari D., Elife. August 22, 2017; 6                                                             

Xenopus pitx3 target genes lhx1 and xnr5 are identified using a novel three-fluor flow cytometry-based analysis of promoter activation and repression., Hooker LN, Smoczer C, Abbott S, Fakhereddin M, Hudson JW, Crawford MJ., Dev Dyn. September 1, 2017; 246 (9): 657-669.                    

Wbp2nl has a developmental role in establishing neural and non-neural ectodermal fates., Marchak A, Grant PA, Neilson KM, Datta Majumdar H, Yaklichkin S, Johnson D, Moody SA., Dev Biol. September 1, 2017; 429 (1): 213-224.                    

Generation of animal form by the Chordin/Tolloid/BMP gradient: 100 years after D'Arcy Thompson., De Robertis EM, Moriyama Y, Colozza G., Dev Growth Differ. September 1, 2017; 59 (7): 580-592.            

Role of remodeling and spacing factor 1 in histone H2A ubiquitination-mediated gene silencing., Zhang Z, Zhang Z, Jones AE, Wu W, Kim J, Kang Y, Bi X, Gu Y, Popov IK, Renfrow MB, Vassylyeva MN, Vassylyev DG, Giles KE, Chen D, Kumar A, Fan Y, Tong Y, Liu CF, An W, Chang C, Luo J, Chow LT, Wang H., Proc Natl Acad Sci U S A. September 19, 2017; 114 (38): E7949-E7958.                          

The RNF146 E3 ubiquitin ligase is required for the control of Wnt signaling and body pattern formation in Xenopus., Zhu X, Xing R, Tan R, Dai R, Tao Q, Tao Q., Mech Dev. October 1, 2017; 147 28-36.              

Angiopoietin-like 4 Is a Wnt Signaling Antagonist that Promotes LRP6 Turnover., Kirsch N, Chang LS, Koch S, Glinka A, Dolde C, Colozza G, Benitez MDJ, De Robertis EM, Niehrs C., Dev Cell. October 9, 2017; 43 (1): 71-82.e6.                                

A Nonredundant Role for the TRPM6 Channel in Neural Tube Closure., Komiya Y, Bai Z, Cai N, Lou L, Al-Saadi N, Mezzacappa C, Habas R, Runnels LW., Sci Rep. November 15, 2017; 7 (1): 15623.                    

Mechanical and signaling roles for keratin intermediate filaments in the assembly and morphogenesis of Xenopus mesendoderm tissue at gastrulation., Sonavane PR, Wang C, Dzamba B, Weber GF, Periasamy A, DeSimone DW., Development. December 1, 2017; 144 (23): 4363-4376.                            

Roles of two types of heparan sulfate clusters in Wnt distribution and signaling in Xenopus., Mii Y, Yamamoto T, Takada R, Mizumoto S, Matsuyama M, Yamada S, Takada S, Taira M., Nat Commun. December 7, 2017; 8 (1): 1973.                                                  

Role of maternal Xenopus syntabulin in germ plasm aggregation and primordial germ cell specification., Oh D, Houston DW., Dev Biol. December 15, 2017; 432 (2): 237-247.                      

Evolutionary Proteomics Uncovers Ancient Associations of Cilia with Signaling Pathways., Sigg MA, Menchen T, Lee C, Lee C, Johnson J, Jungnickel MK, Choksi SP, Garcia G, Busengdal H, Dougherty GW, Pennekamp P, Werner C, Rentzsch F, Florman HM, Krogan N, Wallingford JB, Omran H, Reiter JF., Dev Cell. December 18, 2017; 43 (6): 744-762.e11.      

Roles for Xenopus aquaporin-3b (aqp3.L) during gastrulation: Fibrillar fibronectin and tissue boundary establishment in the dorsal margin., Forecki J, Van Antwerp DJ, Lujan SM, Merzdorf CS., Dev Biol. January 1, 2018; 433 (1): 3-16.                      

Amphibian Zic Genes., Merzdorf C, Forecki J., Adv Exp Med Biol. January 1, 2018; 1046 107-140.

An atlas of Wnt activity during embryogenesis in Xenopus tropicalis., Borday C, Parain K, Thi Tran H, Vleminckx K, Vleminckx K, Perron M, Monsoro-Burq AH., PLoS One. January 1, 2018; 13 (4): e0193606.                

Pou3f transcription factor expression during embryonic development highlights distinct pou3f3 and pou3f4 localization in the Xenopus laevis kidney., Cosse-Etchepare C, Gervi I, Buisson I, Formery L, Schubert M, Riou JF, Umbhauer M, Le Bouffant R., Int J Dev Biol. January 1, 2018; 62 (4-5): 325-333.                                                                      

Two Tier Hox Collinearity Mediates Vertebrate Axial Patterning., Durston AJ., Front Cell Dev Biol. January 1, 2018; 6 102.        

Candidate Heterotaxy Gene FGFR4 Is Essential for Patterning of the Left-Right Organizer in Xenopus., Sempou E, Lakhani OA, Amalraj S, Khokha MK., Front Physiol. January 1, 2018; 9 1705.              

A novel role for sox7 in Xenopus early primordial germ cell development: mining the PGC transcriptome., Butler AM, Owens DA, Wang L, King ML., Development. January 8, 2018; 145 (1):                                                 

Acetaldehyde inhibits retinoic acid biosynthesis to mediate alcohol teratogenicity., Shabtai Y, Bendelac L, Jubran H, Hirschberg J, Fainsod A., Sci Rep. January 10, 2018; 8 (1): 347.                  

Gene expression of the two developmentally regulated dermatan sulfate epimerases in the Xenopus embryo., Gouignard N, Schön T, Holmgren C, Strate I, Taşöz E, Wetzel F, Maccarana M, Pera EM., PLoS One. January 18, 2018; 13 (1): e0191751.                                                          

FGF mediated MAPK and PI3K/Akt Signals make distinct contributions to pluripotency and the establishment of Neural Crest., Geary L, LaBonne C., Elife. January 19, 2018; 7                     

ADMP controls the size of Spemann's organizer through a network of self-regulating expansion-restriction signals., Leibovich A, Kot-Leibovich H, Ben-Zvi D, Fainsod A., BMC Biol. January 22, 2018; 16 (1): 13.                

Divergent axial morphogenesis and early shh expression in vertebrate prospective floor plate., Kremnyov S, Henningfeld K, Viebahn C, Tsikolia N., Evodevo. January 31, 2018; 9 4.                    

Embryonic lethality is not sufficient to explain hourglass-like conservation of vertebrate embryos., Uchida Y, Uesaka M, Yamamoto T, Takeda H, Irie N., Evodevo. January 31, 2018; 9 7.    

Timing is everything: Reiterative Wnt, BMP and RA signaling regulate developmental competence during endoderm organogenesis., Rankin SA, Rankin SA, McCracken KW, Luedeke DM, Han L, Wells JM, Shannon JM, Zorn AM., Dev Biol. February 1, 2018; 434 (1): 121-132.          

Genome-wide transcriptomics analysis identifies sox7 and sox18 as specifically regulated by gata4 in cardiomyogenesis., Afouda BA, Lynch AT, de Paiva Alves E, Hoppler S., Dev Biol. February 1, 2018; 434 (1): 108-120.                  

A Conserved Role of the Unconventional Myosin 1d in Laterality Determination., Tingler M, Kurz S, Maerker M, Ott T, Fuhl F, Schweickert A, LeBlanc-Straceski JM, Noselli S, Blum M., Curr Biol. March 5, 2018; 28 (5): 810-816.e3.                

Phosphorylation states change Otx2 activity for cell proliferation and patterning in the Xenopus embryo., Satou Y, Minami K, Hosono E, Okada H, Yasuoka Y, Shibano T, Tanaka T, Taira M., Development. March 12, 2018; 145 (5):                             

Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus., Gentsch GE, Spruce T, Monteiro RS, Owens NDL, Martin SR, Smith JC., Dev Cell. March 12, 2018; 44 (5): 597-610.e10.                                            

Large, long range tensile forces drive convergence during Xenopus blastopore closure and body axis elongation., Shook DR, Kasprowicz EM, Davidson LA, Davidson LA, Keller R., Elife. March 13, 2018; 7                           

Xenopus embryos to study fetal alcohol syndrome, a model for environmental teratogenesis., Fainsod A, Kot-Leibovich H., Biochem Cell Biol. April 1, 2018; 96 (2): 77-87.

Coordinated regulation of the dorsal-ventral and anterior-posterior patterning of Xenopus embryos by the BTB/POZ zinc finger protein Zbtb14., Takebayashi-Suzuki K, Konishi H, Miyamoto T, Nagata T, Uchida M, Suzuki A., Dev Growth Differ. April 1, 2018; 60 (3): 158-173.          

An Early Function of Polycystin-2 for Left-Right Organizer Induction in Xenopus., Vick P, Kreis J, Schneider I, Tingler M, Getwan M, Thumberger T, Beyer T, Schweickert A, Blum M., iScience. April 27, 2018; 2 76-85.                                        

Roles of Xenopus chemokine ligand CXCLh (XCXCLh) in early embryogenesis., Goto T, Ito Y, Michiue T., Dev Growth Differ. May 1, 2018; 60 (4): 226-238.              

Embryonic regeneration by relocalization of the Spemann organizer during twinning in Xenopus., Moriyama Y, De Robertis EM., Proc Natl Acad Sci U S A. May 22, 2018; 115 (21): E4815-E4822.              

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